Wall clock time and date at job start Tue Mar 31 2020 11:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37105 * 120.00101 * 2 1 4 4 H 1.07999 * 119.99953 * 142.82360 * 3 2 1 5 5 C 1.38943 * 119.99612 * 322.81563 * 3 2 1 6 6 N 1.31414 * 119.99618 * 158.41228 * 5 3 2 7 7 Si 1.86801 * 120.00445 * 338.41317 * 5 3 2 8 8 H 1.48503 * 109.46869 * 95.71596 * 7 5 3 9 9 H 1.48500 * 109.47458 * 215.71895 * 7 5 3 10 10 H 1.48503 * 109.47001 * 335.72011 * 7 5 3 11 11 C 1.34779 * 119.99861 * 179.97438 * 2 1 3 12 12 O 1.21293 * 119.99837 * 180.02562 * 11 2 1 13 13 C 1.50693 * 120.00070 * 0.27853 * 11 2 1 14 14 C 1.52995 * 109.47253 * 179.72210 * 13 11 2 15 15 H 1.09002 * 109.47213 * 304.99954 * 14 13 11 16 16 O 1.42904 * 109.47173 * 65.00104 * 14 13 11 17 17 C 1.50702 * 109.47324 * 184.99934 * 14 13 11 18 18 C 1.38219 * 119.99008 * 279.72826 * 17 14 13 19 19 C 1.38355 * 120.01314 * 179.72703 * 18 17 14 20 20 Cl 1.73606 * 120.00470 * 180.27320 * 19 18 17 21 21 C 1.38329 * 119.98495 * 0.56492 * 19 18 17 22 22 C 1.38327 * 119.97533 * 359.70996 * 21 19 18 23 23 Cl 1.73601 * 120.00399 * 180.02562 * 22 21 19 24 24 C 1.38223 * 119.98474 * 99.99913 * 17 14 13 25 25 H 1.08993 * 109.47081 * 265.14133 * 1 2 3 26 26 H 1.08999 * 109.46484 * 25.14241 * 1 2 3 27 27 H 1.08994 * 109.46797 * 145.13628 * 1 2 3 28 28 H 0.97004 * 119.99987 * 180.02562 * 6 5 3 29 29 H 1.09002 * 109.47298 * 299.72270 * 13 11 2 30 30 H 1.09003 * 109.46833 * 59.72298 * 13 11 2 31 31 H 0.96701 * 113.99621 * 59.99692 * 16 14 13 32 32 H 1.08002 * 119.98793 * 0.02562 * 18 17 14 33 33 H 1.08007 * 120.01095 * 179.72577 * 21 19 18 34 34 H 1.08005 * 119.99312 * 0.02562 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.0659 1.2824 0.5652 5 6 1.6676 2.2683 -0.7273 6 7 2.0434 3.4889 -0.4178 7 14 0.4842 1.9865 -2.1449 8 1 -0.9111 2.1584 -1.6665 9 1 0.7620 2.9680 -3.2242 10 1 0.6610 0.6091 -2.6709 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3854 -2.4723 -0.0052 14 6 2.3796 -3.6352 -0.0104 15 1 3.0637 -3.5246 -0.8517 16 8 3.1219 -3.6326 1.2108 17 6 1.6302 -4.9362 -0.1399 18 6 1.0335 -5.5033 0.9704 19 6 0.3406 -6.6949 0.8509 20 17 -0.4148 -7.4034 2.2442 21 6 0.2550 -7.3246 -0.3778 22 6 0.8572 -6.7595 -1.4875 23 17 0.7497 -7.5488 -3.0299 24 6 1.5446 -5.5648 -1.3680 25 1 -0.3633 -0.0870 1.0239 26 1 -0.3632 0.9303 -0.4366 27 1 -0.3633 -0.8432 -0.5874 28 1 1.7060 4.2436 -0.9253 29 1 0.7587 -2.5340 0.8845 30 1 0.7588 -2.5260 -0.8955 31 1 2.5758 -3.7275 2.0032 32 1 1.1041 -5.0137 1.9304 33 1 -0.2821 -8.2571 -0.4707 34 1 2.0152 -5.1236 -2.2343 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091234096.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:27 Heat of formation + Delta-G solvation = -82.604264 kcal Electronic energy + Delta-G solvation = -21551.199011 eV Core-core repulsion = 17921.474333 eV Total energy + Delta-G solvation = -3629.724678 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.22001 -40.27705 -38.21906 -37.78204 -37.07546 -36.53962 -34.15462 -33.15474 -31.70432 -30.98167 -28.13753 -27.11448 -25.18061 -23.90458 -22.41108 -20.68874 -19.11373 -18.89980 -17.85008 -17.41353 -17.36385 -16.90785 -16.64051 -16.36820 -15.54721 -15.41347 -15.10322 -15.02932 -14.78953 -14.49280 -14.12074 -13.91629 -13.44240 -13.36994 -13.27973 -12.96261 -12.77824 -12.60212 -12.49397 -12.26772 -12.18401 -11.97790 -11.83887 -11.77932 -11.18779 -11.03526 -10.35906 -9.92265 -9.80980 -9.66400 -8.49944 -6.12431 -0.10562 -0.08531 0.75710 1.20915 1.21428 1.34301 1.46270 2.01280 2.19059 2.26711 2.73056 2.95889 3.35829 3.52309 3.79591 3.87564 3.89858 3.98605 4.05128 4.25089 4.33076 4.34498 4.49178 4.55947 4.72950 4.82281 4.84762 4.92049 4.99746 5.27927 5.39826 5.54862 6.05706 6.58681 6.81531 6.97978 7.34027 7.93417 8.67899 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.016426 B = 0.003429 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.207137 B = 8162.831760 C = 8832.581634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.489 5.489 3 C -0.337 4.337 4 H 0.040 0.960 5 C 0.007 3.993 6 N -0.916 5.916 7 Si 0.957 3.043 8 H -0.240 1.240 9 H -0.293 1.293 10 H -0.254 1.254 11 C 0.458 3.542 12 O -0.604 6.604 13 C -0.152 4.152 14 C 0.174 3.826 15 H 0.096 0.904 16 O -0.557 6.557 17 C -0.085 4.085 18 C -0.095 4.095 19 C -0.024 4.024 20 Cl -0.051 7.051 21 C -0.101 4.101 22 C -0.026 4.026 23 Cl -0.054 7.054 24 C -0.099 4.099 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.098 0.902 28 H 0.279 0.721 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.381 0.619 32 H 0.155 0.845 33 H 0.159 0.841 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.835 -24.507 -0.826 27.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.212 5.212 3 C -0.465 4.465 4 H 0.058 0.942 5 C -0.194 4.194 6 N -0.553 5.553 7 Si 0.780 3.220 8 H -0.164 1.164 9 H -0.221 1.221 10 H -0.178 1.178 11 C 0.248 3.752 12 O -0.487 6.487 13 C -0.192 4.192 14 C 0.114 3.886 15 H 0.114 0.886 16 O -0.363 6.363 17 C -0.086 4.086 18 C -0.114 4.114 19 C -0.051 4.051 20 Cl -0.022 7.022 21 C -0.121 4.121 22 C -0.053 4.053 23 Cl -0.025 7.025 24 C -0.118 4.118 25 H 0.093 0.907 26 H 0.071 0.929 27 H 0.116 0.884 28 H 0.089 0.911 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.230 0.770 32 H 0.173 0.827 33 H 0.177 0.823 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.829 -24.360 -1.255 26.688 hybrid contribution -0.436 0.528 -0.144 0.700 sum -11.265 -23.831 -1.398 26.397 Atomic orbital electron populations 1.22243 0.80207 1.02737 1.03345 1.43841 1.05972 1.04608 1.66781 1.18661 1.09272 0.88315 1.30223 0.94217 1.26221 0.99988 0.93810 0.99392 1.69888 1.46313 0.99318 1.39823 0.85730 0.79168 0.78967 0.78165 1.16436 1.22059 1.17807 1.21179 0.88024 0.86148 0.79806 1.90584 1.16399 1.87793 1.53960 1.22396 0.99212 0.90717 1.06918 1.20355 0.91462 0.87908 0.88837 0.88575 1.86778 1.37807 1.96005 1.15730 1.20308 0.98154 0.96950 0.93205 1.21060 0.95933 0.94349 1.00050 1.20695 0.99899 0.95532 0.88949 1.98402 1.80241 1.83308 1.40264 1.21083 1.00087 1.01384 0.89508 1.20719 1.01630 0.95143 0.87759 1.98397 1.97078 1.79675 1.27392 1.21160 0.98389 0.93729 0.98524 0.90667 0.92892 0.88366 0.91124 0.86181 0.86227 0.76959 0.82702 0.82339 0.83486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.93 8.79 127.77 1.12 3.06 16 2 N -0.49 -22.83 2.59 -658.92 -1.70 -24.53 16 3 C -0.34 -19.81 9.37 84.04 0.79 -19.02 16 4 H 0.04 2.77 7.90 -2.91 -0.02 2.75 16 5 C 0.01 0.41 5.29 84.92 0.45 0.86 16 6 N -0.92 -54.85 13.96 21.66 0.30 -54.55 16 7 Si 0.96 41.14 24.96 68.60 1.71 42.86 16 8 H -0.24 -8.88 6.69 99.48 0.67 -8.22 16 9 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 10 H -0.25 -10.38 7.11 99.48 0.71 -9.68 16 11 C 0.46 20.08 7.51 87.65 0.66 20.74 16 12 O -0.60 -32.99 15.28 10.73 0.16 -32.83 16 13 C -0.15 -4.14 3.98 29.84 0.12 -4.03 16 14 C 0.17 4.59 2.75 29.85 0.08 4.67 16 15 H 0.10 2.96 7.82 -2.39 -0.02 2.94 16 16 O -0.56 -16.53 12.42 -135.19 -1.68 -18.21 16 17 C -0.09 -1.65 4.97 -19.87 -0.10 -1.75 16 18 C -0.10 -1.56 9.11 22.29 0.20 -1.36 16 19 C -0.02 -0.37 6.32 22.32 0.14 -0.23 16 20 Cl -0.05 -0.74 28.96 -2.72 -0.08 -0.82 16 21 C -0.10 -1.53 9.61 22.31 0.21 -1.32 16 22 C -0.03 -0.43 6.32 22.32 0.14 -0.29 16 23 Cl -0.05 -0.87 28.96 -2.72 -0.08 -0.95 16 24 C -0.10 -1.83 9.45 22.29 0.21 -1.62 16 25 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.05 1.95 3.42 -2.39 -0.01 1.94 16 27 H 0.10 2.45 6.63 -2.39 -0.02 2.43 16 28 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 29 H 0.12 2.48 8.11 -2.39 -0.02 2.46 16 30 H 0.12 2.64 7.40 -2.39 -0.02 2.63 16 31 H 0.38 7.81 7.50 -74.06 -0.56 7.25 16 32 H 0.16 1.98 6.77 -2.91 -0.02 1.96 16 33 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 34 H 0.15 2.54 8.04 -2.91 -0.02 2.52 16 Total: -1.00 -77.12 319.61 3.23 -73.88 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.57 Total: 15.44 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 4.03 Total: -0.28 kcal Atomic # 7 Polarization: -77.68 SS G_CDS: -1.40 Total: -79.08 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -1.51 Total: -51.04 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 1.71 Total: 42.86 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.16 Total: -1.78 kcal Total: -77.12 3.23 -73.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091234096.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.723 kcal (2) G-P(sol) polarization free energy of solvation -77.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds