Wall clock time and date at job start Tue Mar 31 2020 12:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00221 * 2 1 4 4 H 1.48494 * 109.47425 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46632 * 300.00401 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99679 * 3 2 1 7 7 C 1.37878 * 120.00200 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00181 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99808 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47124 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.46975 * 179.97438 * 10 9 7 12 12 S 1.65606 * 119.99832 * 165.00285 * 11 10 9 13 13 O 1.42110 * 106.39917 * 311.46166 * 12 11 10 14 14 O 1.42102 * 106.40402 * 178.54223 * 12 11 10 15 15 C 1.76203 * 107.22028 * 64.99846 * 12 11 10 16 16 C 1.38352 * 119.85721 * 115.27569 * 15 12 11 17 17 C 1.37930 * 120.17586 * 180.27724 * 16 15 12 18 18 C 1.39651 * 119.89716 * 359.72666 * 17 16 15 19 19 C 1.47740 * 120.13462 * 180.02562 * 18 17 16 20 20 O 1.21468 * 119.99791 * 179.97438 * 19 18 17 21 21 O 1.34705 * 120.00033 * 359.97438 * 19 18 17 22 22 C 1.39580 * 119.72995 * 359.97438 * 18 17 16 23 23 C 1.38198 * 119.81695 * 0.02562 * 22 18 17 24 24 F 1.35104 * 119.95219 * 180.02562 * 23 22 18 25 25 H 0.97001 * 120.00039 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47237 * 60.00268 * 9 7 2 27 27 H 1.08999 * 109.47592 * 300.00046 * 9 7 2 28 28 H 1.09007 * 109.47099 * 60.00457 * 10 9 7 29 29 H 1.08993 * 109.47311 * 300.00337 * 10 9 7 30 30 H 0.97000 * 120.00256 * 345.00423 * 11 10 9 31 31 H 1.07997 * 119.91245 * 0.02562 * 16 15 12 32 32 H 1.07996 * 120.05343 * 179.70655 * 17 16 15 33 33 H 0.96699 * 116.99981 * 180.02562 * 21 19 18 34 34 H 1.07991 * 120.09370 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5128 -4.9308 0.0001 12 16 2.2984 -6.3406 -0.3709 13 8 3.0278 -6.0913 -1.5648 14 8 1.3365 -7.3797 -0.2504 15 6 3.4937 -6.6200 0.8932 16 6 3.3735 -7.7198 1.7239 17 6 4.3022 -7.9417 2.7192 18 6 5.3697 -7.0567 2.8851 19 6 6.3678 -7.2896 3.9491 20 8 7.2956 -6.5185 4.0908 21 8 6.2490 -8.3571 4.7621 22 6 5.4904 -5.9518 2.0407 23 6 4.5533 -5.7406 1.0472 24 9 4.6678 -4.6723 0.2281 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8719 -3.6043 0.8895 29 1 2.8720 -3.6043 -0.8904 30 1 0.5676 -4.9450 0.2178 31 1 2.5481 -8.4043 1.5952 32 1 4.2039 -8.7983 3.3695 33 1 6.9260 -8.4674 5.4436 34 1 6.3138 -5.2640 2.1634 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092114686.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:00 Heat of formation + Delta-G solvation = -210.350973 kcal Electronic energy + Delta-G solvation = -24091.193467 eV Core-core repulsion = 20029.636607 eV Total energy + Delta-G solvation = -4061.556860 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.48622 -41.62918 -39.76219 -38.44500 -37.25242 -37.11828 -37.07421 -34.75944 -33.08003 -32.02113 -31.04403 -26.68276 -26.45964 -24.25083 -23.15277 -22.77128 -20.78330 -19.81727 -19.47495 -18.76921 -18.37682 -18.25541 -17.71677 -17.37225 -17.15098 -16.87551 -16.67287 -16.41857 -15.72685 -15.53961 -15.44990 -15.13008 -14.55764 -14.40443 -14.21369 -13.84933 -13.45726 -13.36956 -13.28817 -13.17311 -13.01234 -12.93008 -12.70912 -12.47468 -12.40429 -12.28469 -11.89058 -11.50631 -11.30677 -10.95476 -10.64756 -10.39884 -10.19016 -8.21257 -6.31364 -1.21680 -0.78000 -0.20656 1.02768 1.41921 1.43432 1.56031 1.67546 1.83222 2.17485 2.42650 2.47139 2.77343 3.08590 3.13837 3.44358 3.69409 3.79852 3.85968 4.15326 4.20355 4.47891 4.48179 4.63810 4.66630 4.78940 4.82414 4.93374 5.33706 5.41070 5.49026 5.61984 5.80449 5.99362 6.22070 6.80146 6.83862 7.37814 8.90946 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.013720 B = 0.004021 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.290699 B = 6962.400442 C = 8392.964319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.963 3.037 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.020 3.980 10 C 0.132 3.868 11 N -1.106 6.106 12 S 2.709 3.291 13 O -0.979 6.979 14 O -0.962 6.962 15 C -0.690 4.690 16 C -0.003 4.003 17 C -0.072 4.072 18 C -0.054 4.054 19 C 0.539 3.461 20 O -0.533 6.533 21 O -0.490 6.490 22 C -0.116 4.116 23 C 0.166 3.834 24 F -0.124 7.124 25 H 0.264 0.736 26 H 0.004 0.996 27 H 0.012 0.988 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.426 0.574 31 H 0.188 0.812 32 H 0.196 0.804 33 H 0.441 0.559 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.887 -20.182 9.997 24.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.787 3.213 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.082 0.918 9 C -0.019 4.019 10 C 0.006 3.994 11 N -0.869 5.869 12 S 2.798 3.202 13 O -0.969 6.969 14 O -0.952 6.952 15 C -0.777 4.777 16 C -0.022 4.022 17 C -0.091 4.091 18 C -0.055 4.055 19 C 0.382 3.618 20 O -0.424 6.424 21 O -0.305 6.305 22 C -0.136 4.136 23 C 0.145 3.855 24 F -0.102 7.102 25 H 0.073 0.927 26 H 0.022 0.978 27 H 0.030 0.970 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.263 0.737 31 H 0.206 0.794 32 H 0.213 0.787 33 H 0.305 0.695 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 9.771 -20.318 8.962 24.261 hybrid contribution 0.667 1.640 0.733 1.916 sum 10.438 -18.678 9.696 23.490 Atomic orbital electron populations 1.70075 1.07623 1.27813 1.51347 1.25877 0.95735 1.03101 0.94603 0.85433 0.79155 0.78932 0.77750 1.18662 1.20543 1.20289 1.21569 0.93802 0.91824 1.51004 0.91765 1.19175 0.94389 0.91858 0.96444 1.21479 0.94852 0.82127 1.00945 1.55323 1.22061 1.21356 1.88142 1.01325 0.73140 0.72076 0.73663 1.93593 1.74187 1.85160 1.43983 1.93559 1.59667 1.54978 1.87031 1.31254 1.16205 1.06390 1.23853 1.21328 0.98687 0.92468 0.89671 1.22045 0.90787 0.99252 0.97012 1.19250 0.95797 0.95934 0.94551 1.20428 0.82731 0.78355 0.80240 1.90949 1.33785 1.46934 1.70701 1.84470 1.56768 1.43711 1.45507 1.21346 0.99561 0.98982 0.93705 1.17050 0.94727 0.83954 0.89744 1.91675 1.95448 1.52834 1.70253 0.92669 0.97784 0.96981 0.91730 0.91603 0.73720 0.79440 0.78711 0.69510 0.82092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.87 13.29 21.45 0.28 -54.58 16 2 C 0.01 0.30 5.46 84.66 0.46 0.76 16 3 Si 0.96 43.59 29.54 68.60 2.03 45.61 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.54 -30.02 9.11 25.60 0.23 -29.79 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 9 C 0.02 1.01 5.11 29.85 0.15 1.16 16 10 C 0.13 5.28 4.49 86.38 0.39 5.67 16 11 N -1.11 -36.21 6.00 -187.48 -1.12 -37.34 16 12 S 2.71 80.88 5.48 -56.49 -0.31 80.57 16 13 O -0.98 -36.39 16.88 -128.00 -2.16 -38.55 16 14 O -0.96 -28.45 16.95 -128.00 -2.17 -30.62 16 15 C -0.69 -16.96 5.90 22.37 0.13 -16.83 16 16 C 0.00 -0.05 9.53 22.22 0.21 0.17 16 17 C -0.07 -0.94 9.62 22.54 0.22 -0.72 16 18 C -0.05 -0.94 5.87 -20.10 -0.12 -1.06 16 19 C 0.54 8.50 8.27 70.33 0.58 9.08 16 20 O -0.53 -12.14 17.13 19.94 0.34 -11.80 16 21 O -0.49 -3.57 12.68 -56.14 -0.71 -4.28 16 22 C -0.12 -2.63 9.57 22.58 0.22 -2.41 16 23 C 0.17 4.47 6.78 22.34 0.15 4.62 16 24 F -0.12 -4.01 12.89 44.97 0.58 -3.43 16 25 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 26 H 0.00 0.20 8.14 -2.39 -0.02 0.19 16 27 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 2.43 6.74 -2.38 -0.02 2.42 16 29 H 0.07 2.76 7.24 -2.39 -0.02 2.74 16 30 H 0.43 12.58 8.65 -96.74 -0.84 11.74 16 31 H 0.19 2.22 7.32 -2.91 -0.02 2.20 16 32 H 0.20 1.00 7.61 -2.91 -0.02 0.97 16 33 H 0.44 -0.65 9.11 -74.06 -0.67 -1.33 16 34 H 0.16 3.53 7.65 -2.92 -0.02 3.51 16 Total: -1.00 -76.43 318.53 -0.94 -77.36 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -0.32 Total: 6.41 kcal Atomic # 6 Polarization: -31.98 SS G_CDS: 2.63 Total: -29.35 kcal Atomic # 7 Polarization: -91.08 SS G_CDS: -0.84 Total: -91.92 kcal Atomic # 8 Polarization: -80.55 SS G_CDS: -4.70 Total: -85.26 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.58 Total: -3.43 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 80.88 SS G_CDS: -0.31 Total: 80.57 kcal Total: -76.43 -0.94 -77.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092114686.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.987 kcal (2) G-P(sol) polarization free energy of solvation -76.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds