Wall clock time and date at job start Tue Mar 31 2020 11:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34225 * 117.00166 * 2 1 4 4 O 1.20827 * 120.00058 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00231 * 179.97438 * 3 2 1 6 6 N 1.46495 * 109.47566 * 180.02562 * 5 3 2 7 7 C 1.36941 * 120.00286 * 262.87183 * 6 5 3 8 8 H 1.07999 * 119.99844 * 143.00696 * 7 6 5 9 9 C 1.38809 * 119.99691 * 323.00359 * 7 6 5 10 10 N 1.31617 * 120.00113 * 156.12154 * 9 7 6 11 11 Si 1.86800 * 120.00254 * 336.12495 * 9 7 6 12 12 H 1.48501 * 109.47254 * 95.19933 * 11 9 7 13 13 H 1.48500 * 109.47252 * 215.19686 * 11 9 7 14 14 H 1.48503 * 109.47082 * 335.19824 * 11 9 7 15 15 C 1.46499 * 120.00010 * 82.86564 * 6 5 3 16 16 C 1.50702 * 109.47276 * 90.00241 * 15 6 5 17 17 C 1.38222 * 119.98855 * 269.72729 * 16 15 6 18 18 C 1.38356 * 120.01369 * 179.76564 * 17 16 15 19 19 Cl 1.73595 * 120.00917 * 180.27695 * 18 17 16 20 20 C 1.38333 * 119.98445 * 0.52852 * 18 17 16 21 21 C 1.38331 * 119.97447 * 359.72380 * 20 18 17 22 22 Cl 1.73602 * 120.00659 * 179.97438 * 21 20 18 23 23 C 1.38221 * 119.98397 * 89.99952 * 16 15 6 24 24 H 1.09006 * 109.47160 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47117 * 299.99393 * 1 2 3 26 26 H 1.09006 * 109.47294 * 59.99649 * 1 2 3 27 27 H 1.08999 * 109.47533 * 300.00854 * 5 3 2 28 28 H 1.09002 * 109.47336 * 60.00550 * 5 3 2 29 29 H 0.96999 * 120.00733 * 180.02562 * 10 9 7 30 30 H 1.09004 * 109.47636 * 210.00305 * 15 6 5 31 31 H 1.09000 * 109.47367 * 330.00497 * 15 6 5 32 32 H 1.07999 * 119.98809 * 359.97438 * 17 16 15 33 33 H 1.08003 * 120.01381 * 179.70153 * 20 18 17 34 34 H 1.07998 * 119.99603 * 359.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6796 0.0011 7 6 4.3175 3.2948 -1.1754 8 1 4.0532 4.3292 -1.3384 9 6 4.9974 2.5889 -2.1583 10 7 4.9179 2.9691 -3.4158 11 14 6.0254 1.0991 -1.6963 12 1 5.2175 -0.1342 -1.8742 13 1 7.2248 1.0353 -2.5694 14 1 6.4509 1.2119 -0.2780 15 6 4.0379 3.4264 1.2602 16 6 5.4090 3.2827 1.8688 17 6 5.6705 2.2468 2.7458 18 6 6.9305 2.1115 3.3011 19 17 7.2608 0.8063 4.3969 20 6 7.9256 3.0197 2.9869 21 6 7.6618 4.0592 2.1132 22 17 8.9098 5.1997 1.7189 23 6 6.4030 4.1902 1.5541 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 3.9557 0.7808 0.8907 28 1 3.9564 0.7806 -0.8892 29 1 5.3927 2.4757 -4.1028 30 1 3.8346 4.4798 1.0673 31 1 3.2912 3.0327 1.9498 32 1 4.8920 1.5409 2.9949 33 1 8.9080 2.9173 3.4239 34 1 6.1970 5.0017 0.8720 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093562311.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:56 Heat of formation + Delta-G solvation = -62.559403 kcal Electronic energy + Delta-G solvation = -22110.174021 eV Core-core repulsion = 18481.318553 eV Total energy + Delta-G solvation = -3628.855468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.30699 -40.51500 -38.13084 -37.72209 -37.28304 -36.74973 -34.07795 -32.60233 -31.60470 -30.06263 -27.95557 -27.66868 -24.27764 -23.75286 -22.54892 -21.72722 -19.15089 -18.68976 -18.15000 -17.65183 -17.12160 -16.94724 -16.70434 -16.61495 -16.03074 -15.34649 -15.06500 -14.84212 -14.68506 -14.43947 -14.13994 -14.00473 -13.32630 -13.31352 -13.05543 -12.93418 -12.79314 -12.63979 -12.32188 -12.13540 -12.03978 -11.93737 -11.90060 -11.74384 -11.67379 -11.41286 -10.73696 -9.82845 -9.68588 -9.05798 -8.27083 -5.68474 0.03602 0.09412 0.81376 1.27011 1.28526 1.33595 1.45239 1.52759 1.86815 2.35292 2.44140 2.99572 3.32401 3.70075 3.96896 4.02876 4.10998 4.16822 4.25181 4.28144 4.37598 4.38157 4.40721 4.63574 4.67658 4.72192 4.94868 5.03755 5.14242 5.45741 5.49492 5.59676 5.82934 6.13290 6.71168 6.99102 7.46168 7.83694 8.91413 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.011730 B = 0.005489 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.480485 B = 5099.795356 C = 6249.152737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.374 6.374 3 C 0.433 3.567 4 O -0.527 6.527 5 C 0.134 3.866 6 N -0.573 5.573 7 C -0.259 4.259 8 H 0.046 0.954 9 C -0.006 4.006 10 N -0.935 5.935 11 Si 0.915 3.085 12 H -0.265 1.265 13 H -0.308 1.308 14 H -0.241 1.241 15 C 0.186 3.814 16 C -0.069 4.069 17 C -0.103 4.103 18 C -0.029 4.029 19 Cl -0.053 7.053 20 C -0.112 4.112 21 C -0.031 4.031 22 Cl -0.062 7.062 23 C -0.094 4.094 24 H 0.132 0.868 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.120 0.880 28 H 0.085 0.915 29 H 0.266 0.734 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.152 0.848 33 H 0.157 0.843 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.066 -5.495 15.501 16.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.291 6.291 3 C 0.274 3.726 4 O -0.415 6.415 5 C 0.006 3.994 6 N -0.293 5.293 7 C -0.389 4.389 8 H 0.064 0.936 9 C -0.205 4.205 10 N -0.577 5.577 11 Si 0.741 3.259 12 H -0.191 1.191 13 H -0.236 1.236 14 H -0.164 1.164 15 C 0.062 3.938 16 C -0.072 4.072 17 C -0.122 4.122 18 C -0.056 4.056 19 Cl -0.025 7.025 20 C -0.132 4.132 21 C -0.058 4.058 22 Cl -0.033 7.033 23 C -0.114 4.114 24 H 0.150 0.850 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.138 0.862 28 H 0.103 0.897 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.170 0.830 33 H 0.175 0.825 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.001 -5.204 15.396 16.374 hybrid contribution 0.416 -0.223 -0.687 0.834 sum 2.417 -5.426 14.709 15.863 Atomic orbital electron populations 1.23454 0.75906 1.05295 1.01941 1.86558 1.24473 1.33839 1.84181 1.26131 0.94157 0.81109 0.71191 1.90568 1.67478 1.37524 1.45896 1.21320 0.85570 0.88206 1.04297 1.43843 1.73329 1.08571 1.03526 1.18559 1.30953 0.97348 0.91997 0.93599 1.26015 0.98543 1.01140 0.94760 1.70003 1.43348 1.43676 1.00666 0.86276 0.79216 0.80463 0.79933 1.19117 1.23596 1.16373 1.20048 0.90437 0.97519 0.85795 1.20717 0.98405 0.93701 0.94399 1.21210 0.96060 0.98367 0.96557 1.20734 0.94918 0.92601 0.97301 1.98364 1.95521 1.47010 1.61559 1.20962 1.00425 0.93183 0.98580 1.20806 0.90431 0.94196 1.00390 1.98362 1.52276 1.59495 1.93212 1.21150 0.91297 1.00454 0.98478 0.84966 0.91809 0.93381 0.86205 0.89749 0.92498 0.91600 0.90171 0.83005 0.82526 0.85222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.56 113.37 1.20 1.88 16 2 O -0.37 -12.24 10.56 -51.37 -0.54 -12.78 16 3 C 0.43 16.84 8.00 71.23 0.57 17.41 16 4 O -0.53 -23.52 16.10 21.96 0.35 -23.16 16 5 C 0.13 5.19 4.87 85.63 0.42 5.61 16 6 N -0.57 -24.60 1.58 -710.70 -1.12 -25.73 16 7 C -0.26 -13.73 9.90 84.03 0.83 -12.90 16 8 H 0.05 2.75 8.06 -2.91 -0.02 2.73 16 9 C -0.01 -0.35 5.23 84.86 0.44 0.09 16 10 N -0.94 -56.12 13.97 21.65 0.30 -55.81 16 11 Si 0.91 41.94 25.15 68.60 1.73 43.66 16 12 H -0.26 -11.35 6.66 99.48 0.66 -10.69 16 13 H -0.31 -14.76 7.11 99.48 0.71 -14.05 16 14 H -0.24 -10.25 7.11 99.48 0.71 -9.55 16 15 C 0.19 6.53 5.71 85.63 0.49 7.02 16 16 C -0.07 -2.18 5.46 -19.87 -0.11 -2.29 16 17 C -0.10 -2.78 9.48 22.29 0.21 -2.57 16 18 C -0.03 -0.73 6.32 22.32 0.14 -0.59 16 19 Cl -0.05 -1.16 28.96 -2.72 -0.08 -1.24 16 20 C -0.11 -2.89 9.62 22.31 0.21 -2.67 16 21 C -0.03 -0.91 6.32 22.32 0.14 -0.77 16 22 Cl -0.06 -1.68 28.96 -2.72 -0.08 -1.76 16 23 C -0.09 -3.06 9.48 22.29 0.21 -2.85 16 24 H 0.13 2.16 8.14 -2.38 -0.02 2.14 16 25 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 26 H 0.05 1.29 8.13 -2.38 -0.02 1.27 16 27 H 0.12 3.65 8.12 -2.39 -0.02 3.63 16 28 H 0.08 3.58 3.69 -2.39 -0.01 3.57 16 29 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 30 H 0.07 2.40 7.98 -2.38 -0.02 2.38 16 31 H 0.08 2.45 8.01 -2.39 -0.02 2.43 16 32 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 33 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 34 H 0.13 4.47 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -64.97 329.86 6.40 -58.56 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 1.09 Total: 10.89 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 4.76 Total: 7.37 kcal Atomic # 7 Polarization: -80.72 SS G_CDS: -0.82 Total: -81.54 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -0.19 Total: -35.94 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.73 Total: 43.66 kcal Atomic # 17 Polarization: -2.85 SS G_CDS: -0.16 Total: -3.00 kcal Total: -64.97 6.40 -58.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093562311.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.997 kcal (2) G-P(sol) polarization free energy of solvation -64.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds