Wall clock time and date at job start Tue Mar 31 2020 11:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34223 * 116.99731 * 2 1 4 4 O 1.20827 * 120.00332 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99720 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.47052 * 180.02562 * 5 3 2 7 7 C 1.36933 * 120.00291 * 84.46536 * 6 5 3 8 8 H 1.08003 * 119.99782 * 319.67092 * 7 6 5 9 9 C 1.38807 * 119.99686 * 139.39174 * 7 6 5 10 10 N 1.31627 * 119.99768 * 162.98137 * 9 7 6 11 11 Si 1.86798 * 120.00286 * 342.98031 * 9 7 6 12 12 H 1.48494 * 109.47314 * 93.32170 * 11 9 7 13 13 H 1.48500 * 109.46947 * 213.32362 * 11 9 7 14 14 H 1.48501 * 109.47296 * 333.32210 * 11 9 7 15 15 C 1.46502 * 119.99751 * 264.46565 * 6 5 3 16 16 C 1.50707 * 109.47100 * 83.44802 * 15 6 5 17 17 C 1.38251 * 119.99884 * 263.01477 * 16 15 6 18 18 C 1.38226 * 120.03594 * 179.76852 * 17 16 15 19 19 C 1.38247 * 120.03484 * 0.50651 * 18 17 16 20 20 C 1.38301 * 120.00358 * 359.74688 * 19 18 17 21 21 Cl 1.73600 * 120.02170 * 179.97438 * 20 19 18 22 22 C 1.38302 * 119.99982 * 83.28864 * 16 15 6 23 23 Cl 1.73606 * 120.01671 * 359.97438 * 22 16 15 24 24 H 1.08998 * 109.47293 * 299.99942 * 1 2 3 25 25 H 1.08998 * 109.47310 * 60.00296 * 1 2 3 26 26 H 1.09000 * 109.46940 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47205 * 59.99840 * 5 3 2 28 28 H 1.08998 * 109.46805 * 299.99422 * 5 3 2 29 29 H 0.96998 * 119.99881 * 179.97438 * 10 9 7 30 30 H 1.08989 * 109.47281 * 203.44860 * 15 6 5 31 31 H 1.09005 * 109.46728 * 323.45032 * 15 6 5 32 32 H 1.07997 * 119.98259 * 0.02562 * 17 16 15 33 33 H 1.08001 * 119.98006 * 180.27111 * 18 17 16 34 34 H 1.08001 * 119.99605 * 179.76753 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.0667 3.3680 1.1809 8 1 3.3145 3.2277 1.9431 9 6 5.1227 4.2417 1.4004 10 7 5.0443 5.1415 2.3580 11 14 6.6552 4.1407 0.3370 12 1 6.5296 5.0837 -0.8031 13 1 7.8455 4.5008 1.1487 14 1 6.8087 2.7570 -0.1798 15 6 4.3062 3.3483 -1.2624 16 6 3.0377 3.8391 -1.9114 17 6 2.4273 3.0834 -2.8951 18 6 1.2613 3.5306 -3.4875 19 6 0.7098 4.7390 -3.1043 20 6 1.3220 5.4988 -2.1242 21 17 0.6303 7.0167 -1.6432 22 6 2.4874 5.0483 -1.5269 23 17 3.2570 6.0007 -0.2963 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.9558 0.7809 -0.8908 28 1 3.9564 0.7806 0.8892 29 1 5.7824 5.7518 2.5116 30 1 4.9651 4.1942 -1.0668 31 1 4.8062 2.6446 -1.9281 32 1 2.8595 2.1412 -3.1979 33 1 0.7828 2.9374 -4.2527 34 1 -0.1993 5.0896 -3.5703 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093562589.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:59 Heat of formation + Delta-G solvation = -54.717767 kcal Electronic energy + Delta-G solvation = -23102.302895 eV Core-core repulsion = 19473.787466 eV Total energy + Delta-G solvation = -3628.515429 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.14997 -40.33376 -37.98906 -37.34503 -37.07647 -36.70111 -33.82068 -32.56072 -31.40899 -29.94940 -27.84702 -27.41925 -24.16016 -23.58636 -22.56924 -21.47014 -19.05126 -18.32977 -17.93305 -17.44930 -17.37657 -16.98835 -16.68589 -16.42770 -15.63485 -15.05328 -14.92192 -14.76215 -14.52814 -14.37129 -14.03738 -13.91761 -13.25737 -12.96663 -12.81439 -12.67687 -12.65034 -12.53522 -12.31528 -12.13227 -11.91828 -11.78752 -11.59930 -11.54967 -11.47547 -11.22447 -10.46787 -9.66746 -9.47522 -8.85541 -8.05735 -5.53993 0.15666 0.26944 1.02695 1.38247 1.45508 1.55572 1.59373 1.61830 2.04596 2.49783 2.59214 3.24526 3.40976 3.75627 3.95291 4.25848 4.27996 4.29731 4.38529 4.39165 4.42819 4.53174 4.62427 4.73550 4.76957 4.84593 4.91727 5.14066 5.31650 5.47508 5.66138 5.83224 5.99769 6.26878 6.90408 7.19150 7.64293 7.98632 9.11390 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.009982 B = 0.009288 C = 0.005893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.454015 B = 3014.080960 C = 4750.023013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.372 6.372 3 C 0.422 3.578 4 O -0.520 6.520 5 C 0.152 3.848 6 N -0.573 5.573 7 C -0.243 4.243 8 H 0.023 0.977 9 C 0.017 3.983 10 N -0.934 5.934 11 Si 0.916 3.084 12 H -0.278 1.278 13 H -0.315 1.315 14 H -0.234 1.234 15 C 0.149 3.851 16 C -0.078 4.078 17 C -0.102 4.102 18 C -0.100 4.100 19 C -0.112 4.112 20 C -0.053 4.053 21 Cl -0.072 7.072 22 C -0.039 4.039 23 Cl -0.048 7.048 24 H 0.040 0.960 25 H 0.056 0.944 26 H 0.130 0.870 27 H 0.131 0.869 28 H 0.106 0.894 29 H 0.257 0.743 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.157 0.843 33 H 0.171 0.829 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.570 -8.812 -14.470 18.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.288 6.288 3 C 0.263 3.737 4 O -0.407 6.407 5 C 0.023 3.977 6 N -0.292 5.292 7 C -0.373 4.373 8 H 0.041 0.959 9 C -0.181 4.181 10 N -0.576 5.576 11 Si 0.744 3.256 12 H -0.205 1.205 13 H -0.244 1.244 14 H -0.157 1.157 15 C 0.025 3.975 16 C -0.082 4.082 17 C -0.121 4.121 18 C -0.118 4.118 19 C -0.131 4.131 20 C -0.080 4.080 21 Cl -0.043 7.043 22 C -0.067 4.067 23 Cl -0.019 7.019 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.148 0.852 27 H 0.149 0.851 28 H 0.124 0.876 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.114 0.886 32 H 0.175 0.825 33 H 0.189 0.811 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.677 -8.175 -14.188 17.684 hybrid contribution 0.193 1.229 0.616 1.388 sum -6.484 -6.946 -13.572 16.568 Atomic orbital electron populations 1.23302 0.76640 1.04775 1.01301 1.86536 1.23671 1.34067 1.84560 1.26319 0.94793 0.80922 0.71694 1.90670 1.67505 1.37492 1.44997 1.20820 0.84816 0.86157 1.05876 1.43925 1.76673 1.06954 1.01685 1.18138 1.04243 1.21877 0.93024 0.95902 1.25719 0.99400 0.96083 0.96885 1.69979 1.32381 1.19555 1.35716 0.86289 0.80352 0.80364 0.78551 1.20531 1.24413 1.15652 1.20728 0.91964 0.97496 0.87353 1.20720 1.00103 0.91714 0.95632 1.21359 0.95932 0.99955 0.94840 1.21469 0.95160 0.95043 1.00117 1.21222 1.00867 0.95019 0.95985 1.21031 0.95462 0.90608 1.00895 1.98335 1.83840 1.30537 1.91575 1.21080 0.95450 0.95699 0.94485 1.98470 1.79911 1.71584 1.51919 0.94104 0.92538 0.85201 0.85149 0.87636 0.93356 0.92518 0.88618 0.82519 0.81130 0.82474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.56 113.37 1.20 1.99 16 2 O -0.37 -10.85 10.57 -51.35 -0.54 -11.39 16 3 C 0.42 14.97 7.99 71.24 0.57 15.54 16 4 O -0.52 -22.70 14.88 21.96 0.33 -22.37 16 5 C 0.15 5.05 6.30 85.63 0.54 5.59 16 6 N -0.57 -24.37 1.60 -710.66 -1.14 -25.51 16 7 C -0.24 -13.00 8.58 84.03 0.72 -12.28 16 8 H 0.02 1.47 8.06 -2.91 -0.02 1.45 16 9 C 0.02 0.94 3.70 84.86 0.31 1.25 16 10 N -0.93 -56.27 13.97 21.65 0.30 -55.97 16 11 Si 0.92 42.76 24.89 68.60 1.71 44.47 16 12 H -0.28 -12.77 6.66 99.48 0.66 -12.10 16 13 H -0.32 -15.37 7.11 99.48 0.71 -14.66 16 14 H -0.23 -9.59 7.11 99.48 0.71 -8.88 16 15 C 0.15 5.74 3.90 85.63 0.33 6.07 16 16 C -0.08 -2.87 4.37 -19.84 -0.09 -2.96 16 17 C -0.10 -2.81 9.57 22.27 0.21 -2.60 16 18 C -0.10 -2.38 10.04 22.27 0.22 -2.16 16 19 C -0.11 -3.11 9.83 22.29 0.22 -2.89 16 20 C -0.05 -1.89 6.32 22.34 0.14 -1.75 16 21 Cl -0.07 -2.50 27.96 -2.72 -0.08 -2.57 16 22 C -0.04 -1.60 6.32 22.34 0.14 -1.46 16 23 Cl -0.05 -2.33 23.50 -2.72 -0.06 -2.39 16 24 H 0.04 1.08 8.13 -2.39 -0.02 1.06 16 25 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 26 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.13 3.10 7.90 -2.39 -0.02 3.08 16 28 H 0.11 3.42 8.08 -2.39 -0.02 3.40 16 29 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 30 H 0.06 2.50 2.65 -2.39 -0.01 2.49 16 31 H 0.10 2.86 7.86 -2.38 -0.02 2.84 16 32 H 0.16 3.20 8.06 -2.91 -0.02 3.17 16 33 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 34 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -72.32 317.16 6.13 -66.18 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: 1.09 Total: 5.23 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 4.53 Total: 4.33 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -0.83 Total: -81.48 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.22 Total: -33.77 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.71 Total: 44.47 kcal Atomic # 17 Polarization: -4.83 SS G_CDS: -0.14 Total: -4.97 kcal Total: -72.32 6.13 -66.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093562589.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.465 kcal (2) G-P(sol) polarization free energy of solvation -72.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds