Wall clock time and date at job start Tue Mar 31 2020 10:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09006 * 110.81562 * 2 1 4 4 C 1.54705 * 110.75454 * 236.67545 * 2 1 3 5 5 C 1.51644 * 101.93405 * 216.40335 * 4 2 1 6 6 C 1.37775 * 132.16242 * 195.89212 * 5 4 2 7 7 C 1.38335 * 120.00501 * 179.02481 * 6 5 4 8 8 S 1.76197 * 120.11550 * 179.97438 * 7 6 5 9 9 O 1.42104 * 106.40303 * 23.56396 * 8 7 6 10 10 O 1.42093 * 106.40409 * 156.48277 * 8 7 6 11 11 N 1.65601 * 107.22007 * 270.02485 * 8 7 6 12 12 C 1.36932 * 120.00071 * 65.00041 * 11 8 7 13 13 H 1.08006 * 120.00313 * 359.97438 * 12 11 8 14 14 C 1.38811 * 120.00052 * 180.02562 * 12 11 8 15 15 N 1.31618 * 120.00022 * 359.97438 * 14 12 11 16 16 Si 1.86809 * 119.99896 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46993 * 60.00439 * 16 14 12 18 18 H 1.48498 * 109.46867 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47080 * 300.00052 * 16 14 12 20 20 C 1.38288 * 119.77652 * 359.97438 * 7 6 5 21 21 C 1.38026 * 120.33222 * 0.17704 * 20 7 6 22 22 Cl 1.73597 * 119.88863 * 180.02562 * 21 20 7 23 23 C 1.38830 * 107.04677 * 15.35379 * 5 4 2 24 24 O 1.36165 * 111.24257 * 1.11543 * 23 5 4 25 25 H 1.09006 * 109.47441 * 298.13750 * 1 2 3 26 26 H 1.08998 * 109.47118 * 58.13715 * 1 2 3 27 27 H 1.09002 * 109.47238 * 178.13564 * 1 2 3 28 28 H 1.09000 * 110.93926 * 98.24466 * 4 2 1 29 29 H 1.09000 * 110.96461 * 334.57923 * 4 2 1 30 30 H 1.08000 * 120.00102 * 359.02606 * 6 5 4 31 31 H 0.96997 * 119.99768 * 244.99865 * 11 8 7 32 32 H 0.97004 * 119.99817 * 180.02562 * 15 14 12 33 33 H 1.08002 * 119.83726 * 180.19603 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9173 1.0189 0.0000 4 6 2.0781 -0.7948 -1.2088 5 6 3.3059 -1.4591 -0.6165 6 6 4.3975 -2.0687 -1.1953 7 6 5.4043 -2.5849 -0.3994 8 16 6.8014 -3.3657 -1.1365 9 8 6.9018 -2.8464 -2.4554 10 8 7.8548 -3.2831 -0.1865 11 7 6.4381 -4.9737 -1.2935 12 6 5.4281 -5.3690 -2.1293 13 1 4.8680 -4.6321 -2.6859 14 6 5.1233 -6.7169 -2.2605 15 7 5.8055 -7.6150 -1.5819 16 14 3.7449 -7.2562 -3.4002 17 1 4.0502 -6.8208 -4.7868 18 1 3.6215 -8.7355 -3.3623 19 1 2.4678 -6.6409 -2.9580 20 6 5.3107 -2.4861 0.9768 21 6 4.2167 -1.8787 1.5592 22 17 4.1113 -1.7604 3.2879 23 6 3.1958 -1.3608 0.7639 24 8 2.0393 -0.7385 1.1236 25 1 -0.3634 0.4847 0.9062 26 1 -0.3633 0.5425 -0.8728 27 1 -0.3634 -1.0271 -0.0334 28 1 2.3527 -0.1246 -2.0234 29 1 1.3567 -1.5392 -1.5457 30 1 4.4672 -2.1435 -2.2704 31 1 6.9409 -5.6355 -0.7934 32 1 5.5927 -8.5569 -1.6739 33 1 6.0977 -2.8860 1.5990 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152460009.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:44 Heat of formation + Delta-G solvation = -90.224143 kcal Electronic energy + Delta-G solvation = -22170.468248 eV Core-core repulsion = 18542.456853 eV Total energy + Delta-G solvation = -3628.011395 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.032 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.25316 -37.66111 -36.28269 -36.11873 -34.76661 -34.70051 -33.21549 -31.21310 -31.03772 -29.93037 -26.79424 -24.60376 -22.95311 -21.94120 -21.85456 -18.55240 -18.22506 -17.66318 -17.18703 -16.91004 -16.25720 -15.66030 -14.77556 -14.65167 -14.47804 -14.21788 -13.79555 -13.50676 -13.28043 -13.06787 -12.91847 -12.72547 -12.35824 -12.04125 -11.66561 -11.49584 -11.37270 -11.19594 -11.12171 -11.09144 -10.97251 -10.94904 -10.80045 -10.65508 -10.39969 -10.09695 -10.01248 -8.66751 -8.41285 -8.26315 -6.56062 -3.97674 0.98126 1.24731 1.51428 2.23475 2.96678 3.14036 3.17516 3.19265 3.43475 4.00582 4.24915 4.32453 4.41937 4.68870 4.74141 4.83737 4.91216 5.05065 5.16667 5.33110 5.35470 5.40047 5.49225 5.64658 5.67574 5.75646 5.82748 6.02680 6.19864 6.37719 6.54444 6.93342 6.98212 7.39655 8.57426 8.70338 9.13622 10.59257 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.012315 B = 0.005364 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.117729 B = 5218.262634 C = 6129.099617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.074 3.926 3 H 0.089 0.911 4 C -0.103 4.103 5 C -0.189 4.189 6 C 0.033 3.967 7 C -0.672 4.672 8 S 2.611 3.389 9 O -0.969 6.969 10 O -0.999 6.999 11 N -0.943 5.943 12 C -0.273 4.273 13 H 0.104 0.896 14 C 0.033 3.967 15 N -0.872 5.872 16 Si 0.922 3.078 17 H -0.269 1.269 18 H -0.281 1.281 19 H -0.272 1.272 20 C 0.017 3.983 21 C -0.077 4.077 22 Cl -0.068 7.068 23 C 0.149 3.851 24 O -0.292 6.292 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.145 0.855 31 H 0.412 0.588 32 H 0.277 0.723 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.339 11.231 2.578 14.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.018 3.982 3 H 0.107 0.893 4 C -0.140 4.140 5 C -0.191 4.191 6 C 0.014 3.986 7 C -0.751 4.751 8 S 2.700 3.300 9 O -0.959 6.959 10 O -0.988 6.988 11 N -0.694 5.694 12 C -0.414 4.414 13 H 0.122 0.878 14 C -0.176 4.176 15 N -0.513 5.513 16 Si 0.748 3.252 17 H -0.194 1.194 18 H -0.206 1.206 19 H -0.197 1.197 20 C -0.003 4.003 21 C -0.105 4.105 22 Cl -0.039 7.039 23 C 0.102 3.898 24 O -0.205 6.205 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.163 0.837 31 H 0.248 0.752 32 H 0.087 0.913 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.780 11.799 2.727 14.958 hybrid contribution -1.329 -0.597 0.219 1.474 sum -10.109 11.202 2.946 15.374 Atomic orbital electron populations 1.21879 0.91832 1.03670 1.03173 1.23472 0.95945 0.95445 0.83340 0.89307 1.21889 0.94464 0.99339 0.98321 1.20792 0.98546 1.06945 0.92835 1.20156 0.88936 0.89090 1.00458 1.32243 1.24125 1.16195 1.02531 1.06758 0.75632 0.73606 0.73964 1.93471 1.86507 1.79536 1.36417 1.93419 1.55536 1.86796 1.63056 1.51851 1.45021 1.21668 1.50907 1.19295 1.12688 0.93264 1.16164 0.87840 1.25275 0.98229 0.95737 0.98328 1.69680 1.39250 1.02238 1.40083 0.86052 0.80693 0.77960 0.80454 1.19394 1.20589 1.19717 1.20552 0.94427 0.91591 0.93698 1.20161 0.95981 1.09960 0.84359 1.98344 1.98241 1.97298 1.10032 1.19256 0.85777 0.92339 0.92388 1.86910 1.33803 1.61929 1.37900 0.91252 0.90142 0.91246 0.88599 0.88592 0.83693 0.75247 0.91327 0.82950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.60 37.15 0.36 -0.81 16 2 C 0.07 0.78 4.26 -25.84 -0.11 0.67 16 3 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.10 -1.16 6.65 -26.52 -0.18 -1.34 16 5 C -0.19 -2.96 6.27 -104.11 -0.65 -3.62 16 6 C 0.03 0.57 9.51 -39.72 -0.38 0.20 16 7 C -0.67 -12.90 5.90 -39.53 -0.23 -13.13 16 8 S 2.61 56.20 5.70 -107.50 -0.61 55.58 16 9 O -0.97 -22.61 17.00 -57.17 -0.97 -23.59 16 10 O -1.00 -22.88 17.29 -57.17 -0.99 -23.87 16 11 N -0.94 -21.97 5.75 31.50 0.18 -21.78 16 12 C -0.27 -6.62 9.63 -15.06 -0.15 -6.77 16 13 H 0.10 2.34 7.82 -52.48 -0.41 1.93 16 14 C 0.03 0.81 5.50 -17.43 -0.10 0.71 16 15 N -0.87 -22.39 13.06 55.49 0.72 -21.67 16 16 Si 0.92 18.94 29.55 -169.99 -5.02 13.92 16 17 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 18 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 19 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 20 C 0.02 0.31 9.28 -39.64 -0.37 -0.06 16 21 C -0.08 -1.32 6.34 -39.23 -0.25 -1.57 16 22 Cl -0.07 -1.05 28.94 -51.86 -1.50 -2.55 16 23 C 0.15 2.45 6.83 -38.94 -0.27 2.19 16 24 O -0.29 -4.26 10.80 -20.26 -0.22 -4.48 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 28 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.10 1.00 7.90 -51.93 -0.41 0.59 16 30 H 0.15 2.37 7.63 -52.49 -0.40 1.97 16 31 H 0.41 9.75 8.02 -34.47 -0.28 9.47 16 32 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 33 H 0.15 2.63 7.62 -52.49 -0.40 2.23 16 LS Contribution 317.15 15.07 4.78 4.78 Total: -1.00 -29.84 317.15 -9.09 -38.93 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -3.14 Total: 8.25 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -2.32 Total: -23.53 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.91 Total: -43.45 kcal Atomic # 8 Polarization: -49.75 SS G_CDS: -2.18 Total: -51.93 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Atomic # 16 Polarization: 56.20 SS G_CDS: -0.61 Total: 55.58 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.50 Total: -2.55 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.84 -9.09 -38.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152460009.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.294 kcal (2) G-P(sol) polarization free energy of solvation -29.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds