Wall clock time and date at job start Tue Mar 31 2020 10:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09006 * 110.81562 * 2 1 4 4 C 1.54705 * 110.75454 * 236.67545 * 2 1 3 5 5 C 1.51644 * 101.93405 * 216.40335 * 4 2 1 6 6 C 1.37775 * 132.16242 * 195.89212 * 5 4 2 7 7 C 1.38335 * 120.00501 * 179.02481 * 6 5 4 8 8 S 1.76197 * 120.11550 * 179.97438 * 7 6 5 9 9 O 1.42104 * 106.40303 * 23.56396 * 8 7 6 10 10 O 1.42093 * 106.40409 * 156.48277 * 8 7 6 11 11 N 1.65601 * 107.22007 * 270.02485 * 8 7 6 12 12 C 1.36932 * 120.00071 * 65.00041 * 11 8 7 13 13 H 1.08006 * 120.00313 * 359.97438 * 12 11 8 14 14 C 1.38811 * 120.00052 * 180.02562 * 12 11 8 15 15 N 1.31618 * 120.00022 * 359.97438 * 14 12 11 16 16 Si 1.86809 * 119.99896 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46993 * 60.00439 * 16 14 12 18 18 H 1.48498 * 109.46867 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47080 * 300.00052 * 16 14 12 20 20 C 1.38288 * 119.77652 * 359.97438 * 7 6 5 21 21 C 1.38026 * 120.33222 * 0.17704 * 20 7 6 22 22 Cl 1.73597 * 119.88863 * 180.02562 * 21 20 7 23 23 C 1.38830 * 107.04677 * 15.35379 * 5 4 2 24 24 O 1.36165 * 111.24257 * 1.11543 * 23 5 4 25 25 H 1.09006 * 109.47441 * 298.13750 * 1 2 3 26 26 H 1.08998 * 109.47118 * 58.13715 * 1 2 3 27 27 H 1.09002 * 109.47238 * 178.13564 * 1 2 3 28 28 H 1.09000 * 110.93926 * 98.24466 * 4 2 1 29 29 H 1.09000 * 110.96461 * 334.57923 * 4 2 1 30 30 H 1.08000 * 120.00102 * 359.02606 * 6 5 4 31 31 H 0.96997 * 119.99768 * 244.99865 * 11 8 7 32 32 H 0.97004 * 119.99817 * 180.02562 * 15 14 12 33 33 H 1.08002 * 119.83726 * 180.19603 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9173 1.0189 0.0000 4 6 2.0781 -0.7948 -1.2088 5 6 3.3059 -1.4591 -0.6165 6 6 4.3975 -2.0687 -1.1953 7 6 5.4043 -2.5849 -0.3994 8 16 6.8014 -3.3657 -1.1365 9 8 6.9018 -2.8464 -2.4554 10 8 7.8548 -3.2831 -0.1865 11 7 6.4381 -4.9737 -1.2935 12 6 5.4281 -5.3690 -2.1293 13 1 4.8680 -4.6321 -2.6859 14 6 5.1233 -6.7169 -2.2605 15 7 5.8055 -7.6150 -1.5819 16 14 3.7449 -7.2562 -3.4002 17 1 4.0502 -6.8208 -4.7868 18 1 3.6215 -8.7355 -3.3623 19 1 2.4678 -6.6409 -2.9580 20 6 5.3107 -2.4861 0.9768 21 6 4.2167 -1.8787 1.5592 22 17 4.1113 -1.7604 3.2879 23 6 3.1958 -1.3608 0.7639 24 8 2.0393 -0.7385 1.1236 25 1 -0.3634 0.4847 0.9062 26 1 -0.3633 0.5425 -0.8728 27 1 -0.3634 -1.0271 -0.0334 28 1 2.3527 -0.1246 -2.0234 29 1 1.3567 -1.5392 -1.5457 30 1 4.4672 -2.1435 -2.2704 31 1 6.9409 -5.6355 -0.7934 32 1 5.5927 -8.5569 -1.6739 33 1 6.0977 -2.8860 1.5990 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152460009.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:43 Heat of formation + Delta-G solvation = -110.651081 kcal Electronic energy + Delta-G solvation = -22171.354027 eV Core-core repulsion = 18542.456853 eV Total energy + Delta-G solvation = -3628.897173 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.032 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.40803 -38.94979 -38.07290 -37.54937 -36.70086 -36.45073 -34.19984 -32.82206 -32.31097 -31.29379 -27.77229 -26.41156 -24.33499 -23.20076 -22.78207 -20.29886 -19.98903 -18.83295 -18.78213 -18.18984 -17.95515 -16.83420 -16.44369 -16.15899 -15.93152 -15.63605 -15.33485 -14.82471 -14.45695 -14.15767 -13.98314 -13.81685 -13.62278 -13.16230 -13.09442 -13.02402 -13.00055 -12.84108 -12.73941 -12.66335 -12.37028 -12.22717 -12.17258 -11.99861 -11.95080 -11.83843 -11.63750 -10.17220 -9.98367 -9.59377 -8.29942 -5.86359 -0.47924 -0.20435 -0.10095 0.92077 1.49818 1.53818 1.59507 1.84794 2.06432 2.33998 2.68140 2.94750 3.16065 3.24718 3.40704 3.61555 3.75431 3.96186 3.99617 4.04655 4.17408 4.36754 4.55216 4.64552 4.70734 4.82059 4.88273 4.93487 4.99696 5.11496 5.19728 5.29532 5.63077 5.79958 6.75712 6.97809 7.33603 8.88089 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.012315 B = 0.005364 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.117729 B = 5218.262634 C = 6129.099617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.067 3.933 3 H 0.109 0.891 4 C -0.101 4.101 5 C -0.187 4.187 6 C 0.025 3.975 7 C -0.688 4.688 8 S 2.675 3.325 9 O -0.987 6.987 10 O -1.008 7.008 11 N -0.971 5.971 12 C -0.311 4.311 13 H 0.112 0.888 14 C -0.017 4.017 15 N -0.926 5.926 16 Si 0.979 3.021 17 H -0.264 1.264 18 H -0.285 1.285 19 H -0.262 1.262 20 C 0.008 3.992 21 C -0.089 4.089 22 Cl -0.054 7.054 23 C 0.156 3.844 24 O -0.300 6.300 25 H 0.072 0.928 26 H 0.109 0.891 27 H 0.062 0.938 28 H 0.124 0.876 29 H 0.109 0.891 30 H 0.155 0.845 31 H 0.407 0.593 32 H 0.272 0.728 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.677 14.038 2.373 18.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.012 3.988 3 H 0.126 0.874 4 C -0.138 4.138 5 C -0.189 4.189 6 C 0.006 3.994 7 C -0.774 4.774 8 S 2.766 3.234 9 O -0.977 6.977 10 O -0.998 6.998 11 N -0.724 5.724 12 C -0.445 4.445 13 H 0.129 0.871 14 C -0.219 4.219 15 N -0.569 5.569 16 Si 0.803 3.197 17 H -0.189 1.189 18 H -0.210 1.210 19 H -0.187 1.187 20 C -0.012 4.012 21 C -0.117 4.117 22 Cl -0.025 7.025 23 C 0.108 3.892 24 O -0.214 6.214 25 H 0.091 0.909 26 H 0.127 0.873 27 H 0.081 0.919 28 H 0.143 0.857 29 H 0.127 0.873 30 H 0.173 0.827 31 H 0.242 0.758 32 H 0.081 0.919 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -11.141 14.517 2.450 18.463 hybrid contribution -0.616 -0.982 0.473 1.252 sum -11.757 13.536 2.923 18.165 Atomic orbital electron populations 1.21929 0.89590 1.03832 1.04781 1.23917 0.97667 0.95681 0.81511 0.87366 1.22102 0.92444 0.99928 0.99280 1.21192 0.99082 1.05691 0.92965 1.20314 0.89144 0.89110 1.00848 1.31358 1.23609 1.19150 1.03250 1.02966 0.74506 0.72743 0.73189 1.93467 1.86793 1.79798 1.37689 1.93435 1.55663 1.87056 1.63655 1.51368 1.46035 1.21664 1.53373 1.19476 1.12383 0.93813 1.18852 0.87063 1.25992 1.00442 0.95730 0.99687 1.69789 1.41939 1.02080 1.43076 0.85193 0.78501 0.77212 0.78838 1.18918 1.21004 1.18693 1.20604 0.95292 0.91949 0.93308 1.20192 0.96100 1.10052 0.85395 1.98346 1.98189 1.97227 1.08752 1.19464 0.85867 0.91225 0.92648 1.86930 1.32661 1.61800 1.40006 0.90856 0.87251 0.91906 0.85737 0.87319 0.82724 0.75809 0.91893 0.82673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.60 71.98 0.69 -0.94 16 2 C 0.07 1.12 4.26 31.17 0.13 1.26 16 3 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 4 C -0.10 -1.83 6.65 30.73 0.20 -1.62 16 5 C -0.19 -5.30 6.27 -19.53 -0.12 -5.43 16 6 C 0.03 0.83 9.51 22.18 0.21 1.04 16 7 C -0.69 -25.79 5.90 22.30 0.13 -25.66 16 8 S 2.68 114.91 5.70 -56.49 -0.32 114.59 16 9 O -0.99 -45.51 17.00 -128.00 -2.18 -47.69 16 10 O -1.01 -45.92 17.29 -128.00 -2.21 -48.13 16 11 N -0.97 -46.63 5.75 -54.27 -0.31 -46.95 16 12 C -0.31 -15.47 9.63 84.03 0.81 -14.67 16 13 H 0.11 5.11 7.82 -2.91 -0.02 5.09 16 14 C -0.02 -0.84 5.50 84.86 0.47 -0.38 16 15 N -0.93 -50.15 13.06 21.65 0.28 -49.87 16 16 Si 0.98 39.70 29.55 68.60 2.03 41.73 16 17 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 18 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 19 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 20 C 0.01 0.30 9.28 22.23 0.21 0.50 16 21 C -0.09 -2.93 6.34 22.50 0.14 -2.79 16 22 Cl -0.05 -1.58 28.94 -2.72 -0.08 -1.66 16 23 C 0.16 4.71 6.83 22.69 0.15 4.87 16 24 O -0.30 -7.78 10.80 -95.43 -1.03 -8.81 16 25 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 26 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.06 0.82 8.11 -2.39 -0.02 0.80 16 28 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.11 1.77 7.90 -2.39 -0.02 1.75 16 30 H 0.16 4.75 7.63 -2.91 -0.02 4.73 16 31 H 0.41 20.25 8.02 -96.75 -0.78 19.47 16 32 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 33 H 0.16 5.31 7.62 -2.91 -0.02 5.28 16 Total: -1.00 -65.20 317.15 -0.40 -65.61 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.39 Total: 24.99 kcal Atomic # 6 Polarization: -46.84 SS G_CDS: 3.03 Total: -43.81 kcal Atomic # 7 Polarization: -96.78 SS G_CDS: -0.03 Total: -96.81 kcal Atomic # 8 Polarization: -99.21 SS G_CDS: -5.42 Total: -104.63 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Atomic # 16 Polarization: 114.91 SS G_CDS: -0.32 Total: 114.59 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.08 Total: -1.66 kcal Total: -65.20 -0.40 -65.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152460009.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.044 kcal (2) G-P(sol) polarization free energy of solvation -65.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds