Wall clock time and date at job start Tue Mar 31 2020 10:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 110.66902 * 2 1 4 4 C 1.54711 * 110.74919 * 123.42268 * 2 1 3 5 5 C 1.51646 * 101.92051 * 143.63268 * 4 2 1 6 6 C 1.37779 * 132.15901 * 164.55310 * 5 4 2 7 7 C 1.38340 * 119.99894 * 180.72762 * 6 5 4 8 8 S 1.76199 * 120.11319 * 179.72191 * 7 6 5 9 9 O 1.42096 * 106.40321 * 156.18613 * 8 7 6 10 10 O 1.42108 * 106.39883 * 23.26622 * 8 7 6 11 11 N 1.65597 * 107.22117 * 269.72771 * 8 7 6 12 12 C 1.36943 * 119.99912 * 64.72090 * 11 8 7 13 13 H 1.08002 * 119.99793 * 0.27628 * 12 11 8 14 14 C 1.38811 * 120.00012 * 180.27700 * 12 11 8 15 15 N 1.31611 * 120.00081 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99814 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47483 * 90.00178 * 16 14 12 18 18 H 1.48498 * 109.47011 * 210.00042 * 16 14 12 19 19 H 1.48502 * 109.47495 * 329.99664 * 16 14 12 20 20 C 1.38287 * 119.77459 * 359.45204 * 7 6 5 21 21 C 1.38025 * 120.33642 * 0.11632 * 20 7 6 22 22 Cl 1.73603 * 119.88986 * 180.02562 * 21 20 7 23 23 C 1.38841 * 107.04628 * 344.49559 * 5 4 2 24 24 O 1.36160 * 111.24596 * 359.10398 * 23 5 4 25 25 H 1.09004 * 109.47280 * 181.75739 * 1 2 3 26 26 H 1.08999 * 109.47425 * 301.76342 * 1 2 3 27 27 H 1.09002 * 109.46999 * 61.76642 * 1 2 3 28 28 H 1.08997 * 110.93515 * 261.78885 * 4 2 1 29 29 H 1.08993 * 110.93682 * 25.47465 * 4 2 1 30 30 H 1.07998 * 120.00336 * 0.50116 * 6 5 4 31 31 H 0.97001 * 120.00224 * 245.00409 * 11 8 7 32 32 H 0.97008 * 120.00329 * 179.97438 * 15 14 12 33 33 H 1.08000 * 119.83420 * 180.10018 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 6 2.0781 -0.7969 1.2075 5 6 3.3063 -1.4594 0.6141 6 6 4.3943 -2.0766 1.1918 7 6 5.4002 -2.5932 0.3950 8 16 6.7964 -3.3766 1.1308 9 8 7.3274 -4.2555 0.1486 10 8 6.3807 -3.8104 2.4186 11 7 7.9413 -2.2060 1.3787 12 6 7.6968 -1.1844 2.2573 13 1 6.7592 -1.1446 2.7918 14 6 8.6541 -0.2000 2.4608 15 7 8.4194 0.7816 3.3055 16 14 10.2755 -0.2686 1.5357 17 1 10.1462 0.4711 0.2545 18 1 11.3426 0.3528 2.3605 19 1 10.6269 -1.6842 1.2567 20 6 5.3036 -2.4978 -0.9812 21 6 4.2104 -1.8879 -1.5626 22 17 4.1006 -1.7750 -3.2915 23 6 3.1948 -1.3613 -0.7664 24 8 2.0393 -0.7366 -1.1249 25 1 -0.3634 -1.0272 0.0315 26 1 -0.3634 0.5410 0.8737 27 1 -0.3633 0.4862 -0.9054 28 1 2.3520 -0.1282 2.0235 29 1 1.3566 -1.5423 1.5421 30 1 4.4636 -2.1538 2.2668 31 1 8.7833 -2.2417 0.8986 32 1 9.0885 1.4693 3.4480 33 1 6.0875 -2.9022 -1.6042 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152460106.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:47 Heat of formation + Delta-G solvation = -105.900248 kcal Electronic energy + Delta-G solvation = -22188.819721 eV Core-core repulsion = 18560.128559 eV Total energy + Delta-G solvation = -3628.691162 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.032 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.42625 -38.97691 -38.17289 -37.56080 -36.80401 -36.57547 -34.21553 -33.38622 -32.34068 -31.32619 -27.79764 -26.14577 -24.38306 -23.23383 -22.80181 -20.71219 -20.17437 -18.88866 -18.84563 -18.14889 -18.03607 -16.90905 -16.62525 -16.13646 -15.92045 -15.65316 -15.03487 -14.85433 -14.57887 -14.46158 -14.16479 -13.99905 -13.64814 -13.26986 -13.16304 -13.10612 -13.06857 -12.90608 -12.78871 -12.65045 -12.34389 -12.21307 -12.17212 -12.09703 -11.96090 -11.90190 -11.69664 -10.38960 -9.99965 -9.62265 -8.30026 -5.93687 -0.54202 -0.29495 -0.11696 0.90603 1.39796 1.40337 1.46661 1.81716 2.02925 2.31941 2.42183 2.84983 3.11752 3.17663 3.38308 3.56138 3.70599 3.94130 3.96888 4.01341 4.15167 4.34968 4.51387 4.64514 4.68654 4.79944 4.83794 4.92497 4.98119 4.99424 5.18237 5.27535 5.75463 5.76745 6.34582 7.00593 7.16205 8.84539 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.013822 B = 0.005038 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.269415 B = 5556.337747 C = 6019.097655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.066 3.934 3 H 0.101 0.899 4 C -0.102 4.102 5 C -0.190 4.190 6 C 0.028 3.972 7 C -0.689 4.689 8 S 2.695 3.305 9 O -0.993 6.993 10 O -0.984 6.984 11 N -0.995 5.995 12 C -0.305 4.305 13 H 0.098 0.902 14 C 0.000 4.000 15 N -0.931 5.931 16 Si 0.930 3.070 17 H -0.262 1.262 18 H -0.279 1.279 19 H -0.245 1.245 20 C 0.012 3.988 21 C -0.089 4.089 22 Cl -0.050 7.050 23 C 0.159 3.841 24 O -0.297 6.297 25 H 0.068 0.932 26 H 0.106 0.894 27 H 0.073 0.927 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.148 0.852 31 H 0.399 0.601 32 H 0.274 0.726 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.270 -0.654 -8.224 15.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.012 3.988 3 H 0.118 0.882 4 C -0.138 4.138 5 C -0.191 4.191 6 C 0.008 3.992 7 C -0.775 4.775 8 S 2.786 3.214 9 O -0.983 6.983 10 O -0.974 6.974 11 N -0.750 5.750 12 C -0.437 4.437 13 H 0.116 0.884 14 C -0.201 4.201 15 N -0.574 5.574 16 Si 0.753 3.247 17 H -0.187 1.187 18 H -0.204 1.204 19 H -0.169 1.169 20 C -0.008 4.008 21 C -0.117 4.117 22 Cl -0.022 7.022 23 C 0.111 3.889 24 O -0.211 6.211 25 H 0.087 0.913 26 H 0.125 0.875 27 H 0.092 0.908 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.166 0.834 31 H 0.235 0.765 32 H 0.083 0.917 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -13.491 -1.378 -8.237 15.867 hybrid contribution 0.913 0.862 -0.686 1.431 sum -12.579 -0.515 -8.922 15.430 Atomic orbital electron populations 1.21918 0.89145 1.04088 1.04742 1.23888 0.97916 0.95512 0.81510 0.88158 1.22084 0.92645 0.99969 0.99146 1.21166 0.99333 1.05476 0.93174 1.20274 0.89426 0.88833 1.00638 1.31151 1.21395 1.21689 1.03267 1.02026 0.72853 0.73567 0.73001 1.93474 1.79099 1.64101 1.61654 1.93500 1.83059 1.80520 1.40333 1.51636 1.26695 1.44399 1.52315 1.18731 1.05338 1.02182 1.17473 0.88421 1.25682 1.01821 0.94716 0.97925 1.69818 1.36844 1.13509 1.37208 0.85812 0.79561 0.80009 0.79306 1.18662 1.20392 1.16861 1.20665 0.95541 0.91565 0.93025 1.20172 0.96278 1.09723 0.85525 1.98350 1.98153 1.97273 1.08383 1.19495 0.86008 0.90895 0.92523 1.86916 1.32697 1.61660 1.39787 0.91320 0.87519 0.90780 0.86776 0.86615 0.83448 0.76496 0.91662 0.81698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.60 71.98 0.69 -1.00 16 2 C 0.07 1.25 4.26 31.18 0.13 1.38 16 3 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 4 C -0.10 -2.06 6.65 30.73 0.20 -1.85 16 5 C -0.19 -5.61 6.27 -19.53 -0.12 -5.73 16 6 C 0.03 0.95 9.51 22.19 0.21 1.16 16 7 C -0.69 -25.12 5.89 22.31 0.13 -24.98 16 8 S 2.70 109.42 5.70 -56.49 -0.32 109.10 16 9 O -0.99 -40.78 17.29 -128.00 -2.21 -43.00 16 10 O -0.98 -44.79 17.00 -128.00 -2.18 -46.96 16 11 N -1.00 -43.73 5.55 -54.26 -0.30 -44.03 16 12 C -0.30 -15.49 10.12 84.03 0.85 -14.64 16 13 H 0.10 5.26 8.05 -2.91 -0.02 5.24 16 14 C 0.00 -0.01 5.50 84.86 0.47 0.46 16 15 N -0.93 -52.25 13.97 21.65 0.30 -51.95 16 16 Si 0.93 39.23 27.74 68.60 1.90 41.13 16 17 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 18 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.24 -9.38 6.52 99.48 0.65 -8.73 16 20 C 0.01 0.40 9.28 22.23 0.21 0.60 16 21 C -0.09 -2.81 6.34 22.50 0.14 -2.67 16 22 Cl -0.05 -1.40 28.94 -2.72 -0.08 -1.48 16 23 C 0.16 4.82 6.83 22.69 0.16 4.97 16 24 O -0.30 -7.80 10.79 -95.37 -1.03 -8.83 16 25 H 0.07 0.83 8.11 -2.38 -0.02 0.81 16 26 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.12 1.88 7.90 -2.39 -0.02 1.86 16 30 H 0.15 5.00 7.62 -2.91 -0.02 4.97 16 31 H 0.40 16.16 5.88 -96.74 -0.57 15.60 16 32 H 0.27 14.42 8.31 -92.70 -0.77 13.65 16 33 H 0.17 4.97 7.62 -2.91 -0.02 4.95 16 Total: -1.00 -65.28 314.02 -0.31 -65.59 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.54 Total: 22.75 kcal Atomic # 6 Polarization: -45.38 SS G_CDS: 3.07 Total: -42.31 kcal Atomic # 7 Polarization: -95.98 SS G_CDS: 0.00 Total: -95.98 kcal Atomic # 8 Polarization: -93.37 SS G_CDS: -5.42 Total: -98.79 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 1.90 Total: 41.13 kcal Atomic # 16 Polarization: 109.42 SS G_CDS: -0.32 Total: 109.10 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.48 kcal Total: -65.28 -0.31 -65.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152460106.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.313 kcal (2) G-P(sol) polarization free energy of solvation -65.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds