Wall clock time and date at job start Tue Mar 31 2020 12:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38245 * 119.94017 * 2 1 4 4 C 1.38434 * 120.35291 * 179.76308 * 3 2 1 5 5 S 1.76201 * 119.88934 * 180.25873 * 4 3 2 6 6 O 1.42098 * 106.39915 * 23.79320 * 5 4 3 7 7 O 1.42100 * 106.39868 * 156.71898 * 5 4 3 8 8 N 1.65600 * 107.21824 * 270.25495 * 5 4 3 9 9 C 1.46511 * 119.99764 * 64.99982 * 8 5 4 10 10 C 1.50700 * 109.46918 * 164.99983 * 9 8 5 11 11 H 1.08002 * 119.99949 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00061 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00101 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00151 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46916 * 90.00429 * 14 12 10 16 16 H 1.48493 * 109.47474 * 210.00268 * 14 12 10 17 17 H 1.48496 * 109.47461 * 330.00587 * 14 12 10 18 18 C 1.37875 * 120.21870 * 0.51761 * 4 3 2 19 19 C 1.39672 * 119.87633 * 359.74202 * 18 4 3 20 20 C 1.47571 * 120.17356 * 180.02562 * 19 18 4 21 21 O 1.21482 * 120.00133 * 179.97438 * 20 19 18 22 22 O 1.34728 * 119.99614 * 359.97438 * 20 19 18 23 23 C 1.38275 * 119.93721 * 180.28048 * 2 1 3 24 24 F 1.35100 * 120.11462 * 359.97438 * 23 2 1 25 25 H 1.09002 * 109.47152 * 269.72150 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.72250 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.72231 * 1 2 3 28 28 H 1.08001 * 119.82237 * 0.02562 * 3 2 1 29 29 H 0.96997 * 120.00282 * 244.99898 * 8 5 4 30 30 H 1.09000 * 109.46839 * 284.99654 * 9 8 5 31 31 H 1.08998 * 109.46815 * 44.99927 * 9 8 5 32 32 H 0.97000 * 120.00318 * 180.02562 * 13 12 10 33 33 H 1.08002 * 120.05929 * 179.71894 * 18 4 3 34 34 H 0.96708 * 116.99496 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1980 0.0000 4 6 3.5813 1.2079 0.0049 5 16 4.4483 2.7419 0.0118 6 8 3.5579 3.7035 0.5609 7 8 5.7339 2.4736 0.5545 8 7 4.6890 3.1759 -1.5681 9 6 3.5423 3.4886 -2.4247 10 6 4.0209 4.1953 -3.6667 11 1 5.0740 4.3915 -3.8044 12 6 3.1147 4.5904 -4.6276 13 7 1.8324 4.3511 -4.4602 14 14 3.7080 5.4670 -6.1668 15 1 4.0121 4.4657 -7.2205 16 1 2.6491 6.3888 -6.6508 17 1 4.9344 6.2432 -5.8529 18 6 4.2838 0.0216 -0.0009 19 6 3.5962 -1.1941 -0.0063 20 6 4.3416 -2.4678 -0.0119 21 8 3.7404 -3.5234 -0.0162 22 8 5.6888 -2.4598 -0.0124 23 6 2.1971 -1.1982 -0.0059 24 9 1.5227 -2.3688 -0.0111 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3633 -0.8875 -0.5181 27 1 -0.3633 0.8925 -0.5095 28 1 1.6531 2.1310 0.0004 29 1 5.5891 3.2232 -1.9264 30 1 3.0354 2.5651 -2.7046 31 1 2.8499 4.1336 -1.8837 32 1 1.1948 4.6287 -5.1364 33 1 5.3638 0.0324 -0.0016 34 1 6.1329 -3.3189 -0.0166 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158946258.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:02 Heat of formation + Delta-G solvation = -190.634925 kcal Electronic energy + Delta-G solvation = -24314.811458 eV Core-core repulsion = 20254.109549 eV Total energy + Delta-G solvation = -4060.701908 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.28783 -40.52333 -39.01601 -36.89773 -36.30346 -35.50718 -34.74845 -33.35757 -32.24700 -31.40568 -27.40481 -26.83929 -25.21155 -22.86782 -22.58224 -21.66161 -19.04100 -18.30331 -18.06049 -17.65831 -17.26481 -16.82444 -16.36604 -16.27452 -15.94924 -15.48701 -15.37948 -14.64319 -14.29559 -13.75804 -13.66312 -13.53547 -13.37258 -13.35221 -12.75801 -12.41029 -12.32277 -12.20957 -11.93234 -11.92036 -11.79059 -11.73205 -11.62641 -11.05918 -10.99046 -10.81892 -10.67928 -10.20532 -9.52679 -9.50106 -9.16585 -9.00142 -8.34529 -6.25787 -4.30500 0.16093 0.56335 0.81888 2.13109 2.63773 3.05901 3.20999 3.28133 3.30788 3.55138 3.72097 4.06376 4.17570 4.28663 4.54907 4.59162 4.84749 4.96700 5.06050 5.12271 5.36323 5.42137 5.45578 5.65190 5.76313 5.85195 5.89235 6.17805 6.29702 6.37105 7.15865 7.21674 7.60738 7.66916 7.72017 8.07333 8.73350 9.35174 10.84582 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.013698 B = 0.004262 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.541512 B = 6567.973733 C = 6964.652749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.150 4.150 3 C 0.051 3.949 4 C -0.694 4.694 5 S 2.693 3.307 6 O -0.955 6.955 7 O -0.972 6.972 8 N -1.100 6.100 9 C 0.244 3.756 10 C -0.531 4.531 11 H 0.067 0.933 12 C 0.063 3.937 13 N -0.890 5.890 14 Si 0.904 3.096 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.272 1.272 18 C 0.062 3.938 19 C -0.189 4.189 20 C 0.532 3.468 21 O -0.504 6.504 22 O -0.506 6.506 23 C 0.209 3.791 24 F -0.107 7.107 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.162 0.838 29 H 0.413 0.587 30 H 0.022 0.978 31 H 0.041 0.959 32 H 0.266 0.734 33 H 0.164 0.836 34 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.626 -10.411 8.688 13.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.152 4.152 3 C 0.032 3.968 4 C -0.777 4.777 5 S 2.778 3.222 6 O -0.945 6.945 7 O -0.962 6.962 8 N -0.863 5.863 9 C 0.121 3.879 10 C -0.570 4.570 11 H 0.085 0.915 12 C -0.141 4.141 13 N -0.528 5.528 14 Si 0.731 3.269 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.196 1.196 18 C 0.043 3.957 19 C -0.192 4.192 20 C 0.376 3.624 21 O -0.393 6.393 22 O -0.318 6.318 23 C 0.189 3.811 24 F -0.085 7.085 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.179 0.821 29 H 0.248 0.752 30 H 0.040 0.960 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.182 0.818 34 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 1.087 -9.930 9.416 13.728 hybrid contribution 0.392 -1.058 -1.460 1.846 sum 1.479 -10.989 7.955 13.646 Atomic orbital electron populations 1.20795 0.88465 1.04537 1.03371 1.20029 0.98142 0.91009 1.05975 1.21122 0.91987 0.98746 0.84943 1.31485 1.06296 1.21770 1.18139 1.01973 0.73188 0.73458 0.73543 1.93584 1.66959 1.56769 1.77153 1.93550 1.39071 1.85828 1.77796 1.55463 1.17190 1.83202 1.30422 1.19144 0.82648 0.96223 0.89919 1.21172 0.94273 1.38659 1.02941 0.91494 1.24958 0.94768 0.95742 0.98629 1.69917 1.01210 1.46403 1.35282 0.86404 0.78587 0.79454 0.82444 1.20512 1.20997 1.19642 1.21101 1.01085 0.88832 0.84705 1.19069 0.91415 0.92589 1.16132 1.20389 0.80796 0.88629 0.72564 1.90949 1.69744 1.32797 1.45848 1.84560 1.20321 1.41187 1.85760 1.17682 0.88054 0.81729 0.93681 1.91599 1.79642 1.45220 1.91990 0.90282 0.90732 0.89564 0.82053 0.75206 0.96003 0.94142 0.92388 0.81836 0.72339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 9.83 36.01 0.35 -0.84 16 2 C -0.15 -1.97 5.88 -104.60 -0.62 -2.58 16 3 C 0.05 0.72 9.16 -39.51 -0.36 0.36 16 4 C -0.69 -10.30 5.94 -39.64 -0.24 -10.53 16 5 S 2.69 45.07 5.73 -107.50 -0.62 44.45 16 6 O -0.95 -18.42 16.74 -57.17 -0.96 -19.38 16 7 O -0.97 -16.98 17.27 -57.17 -0.99 -17.97 16 8 N -1.10 -20.22 5.99 -11.65 -0.07 -20.29 16 9 C 0.24 5.56 5.98 -5.19 -0.03 5.53 16 10 C -0.53 -13.47 9.27 -34.44 -0.32 -13.79 16 11 H 0.07 1.62 7.65 -52.49 -0.40 1.22 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 13 N -0.89 -24.22 13.29 55.43 0.74 -23.48 16 14 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 15 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 18 C 0.06 0.85 9.08 -39.18 -0.36 0.50 16 19 C -0.19 -2.64 5.88 -104.93 -0.62 -3.25 16 20 C 0.53 7.01 8.27 34.54 0.29 7.30 16 21 O -0.50 -7.82 16.13 -19.25 -0.31 -8.13 16 22 O -0.51 -4.92 12.68 -40.57 -0.51 -5.43 16 23 C 0.21 2.94 7.23 -38.94 -0.28 2.66 16 24 F -0.11 -1.55 14.76 2.25 0.03 -1.52 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.74 7.64 -51.93 -0.40 0.35 16 27 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 28 H 0.16 2.15 7.61 -52.49 -0.40 1.75 16 29 H 0.41 6.89 8.54 -34.47 -0.29 6.60 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.99 7.75 -51.93 -0.40 0.59 16 32 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.16 1.99 7.16 -52.49 -0.38 1.61 16 34 H 0.42 1.96 9.11 45.56 0.42 2.38 16 LS Contribution 323.55 15.07 4.88 4.88 Total: -1.00 -32.97 323.55 -7.36 -40.33 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -2.25 Total: 4.63 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -2.27 Total: -13.12 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.67 Total: -43.78 kcal Atomic # 8 Polarization: -48.14 SS G_CDS: -2.77 Total: -50.91 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.03 Total: -1.52 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: 45.07 SS G_CDS: -0.62 Total: 44.45 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.97 -7.36 -40.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158946258.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.303 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds