Wall clock time and date at job start Tue Mar 31 2020 12:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38245 * 119.94017 * 2 1 4 4 C 1.38434 * 120.35291 * 179.76308 * 3 2 1 5 5 S 1.76201 * 119.88934 * 180.25873 * 4 3 2 6 6 O 1.42098 * 106.39915 * 23.79320 * 5 4 3 7 7 O 1.42100 * 106.39868 * 156.71898 * 5 4 3 8 8 N 1.65600 * 107.21824 * 270.25495 * 5 4 3 9 9 C 1.46511 * 119.99764 * 64.99982 * 8 5 4 10 10 C 1.50700 * 109.46918 * 164.99983 * 9 8 5 11 11 H 1.08002 * 119.99949 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00061 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00101 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00151 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46916 * 90.00429 * 14 12 10 16 16 H 1.48493 * 109.47474 * 210.00268 * 14 12 10 17 17 H 1.48496 * 109.47461 * 330.00587 * 14 12 10 18 18 C 1.37875 * 120.21870 * 0.51761 * 4 3 2 19 19 C 1.39672 * 119.87633 * 359.74202 * 18 4 3 20 20 C 1.47571 * 120.17356 * 180.02562 * 19 18 4 21 21 O 1.21482 * 120.00133 * 179.97438 * 20 19 18 22 22 O 1.34728 * 119.99614 * 359.97438 * 20 19 18 23 23 C 1.38275 * 119.93721 * 180.28048 * 2 1 3 24 24 F 1.35100 * 120.11462 * 359.97438 * 23 2 1 25 25 H 1.09002 * 109.47152 * 269.72150 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.72250 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.72231 * 1 2 3 28 28 H 1.08001 * 119.82237 * 0.02562 * 3 2 1 29 29 H 0.96997 * 120.00282 * 244.99898 * 8 5 4 30 30 H 1.09000 * 109.46839 * 284.99654 * 9 8 5 31 31 H 1.08998 * 109.46815 * 44.99927 * 9 8 5 32 32 H 0.97000 * 120.00318 * 180.02562 * 13 12 10 33 33 H 1.08002 * 120.05929 * 179.71894 * 18 4 3 34 34 H 0.96708 * 116.99496 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1980 0.0000 4 6 3.5813 1.2079 0.0049 5 16 4.4483 2.7419 0.0118 6 8 3.5579 3.7035 0.5609 7 8 5.7339 2.4736 0.5545 8 7 4.6890 3.1759 -1.5681 9 6 3.5423 3.4886 -2.4247 10 6 4.0209 4.1953 -3.6667 11 1 5.0740 4.3915 -3.8044 12 6 3.1147 4.5904 -4.6276 13 7 1.8324 4.3511 -4.4602 14 14 3.7080 5.4670 -6.1668 15 1 4.0121 4.4657 -7.2205 16 1 2.6491 6.3888 -6.6508 17 1 4.9344 6.2432 -5.8529 18 6 4.2838 0.0216 -0.0009 19 6 3.5962 -1.1941 -0.0063 20 6 4.3416 -2.4678 -0.0119 21 8 3.7404 -3.5234 -0.0162 22 8 5.6888 -2.4598 -0.0124 23 6 2.1971 -1.1982 -0.0059 24 9 1.5227 -2.3688 -0.0111 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3633 -0.8875 -0.5181 27 1 -0.3633 0.8925 -0.5095 28 1 1.6531 2.1310 0.0004 29 1 5.5891 3.2232 -1.9264 30 1 3.0354 2.5651 -2.7046 31 1 2.8499 4.1336 -1.8837 32 1 1.1948 4.6287 -5.1364 33 1 5.3638 0.0324 -0.0016 34 1 6.1329 -3.3189 -0.0166 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158946258.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:01 Heat of formation + Delta-G solvation = -215.335003 kcal Electronic energy + Delta-G solvation = -24315.882533 eV Core-core repulsion = 20254.109549 eV Total energy + Delta-G solvation = -4061.772984 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.40026 -41.53808 -40.07758 -38.33835 -37.24174 -36.95947 -36.46066 -34.37295 -34.10669 -32.52838 -28.70684 -28.35558 -26.27116 -24.47372 -23.97668 -22.64689 -20.44496 -19.37315 -19.16632 -19.09767 -18.53322 -17.95067 -17.74742 -17.38625 -17.36664 -16.98948 -16.50934 -16.29413 -15.34850 -15.23235 -14.76021 -14.67233 -14.52182 -14.41552 -14.30611 -14.05480 -13.58686 -13.38450 -13.26107 -13.24377 -13.14108 -12.87750 -12.74972 -12.72570 -12.52663 -12.22575 -12.06124 -11.82237 -11.38921 -10.84025 -10.62593 -10.21253 -10.09486 -8.22401 -6.32931 -0.96799 -0.62607 -0.44544 1.07784 1.47341 1.48826 1.58791 1.72384 1.91997 2.19317 2.44767 2.63472 2.71550 3.07968 3.13951 3.37633 3.59376 3.76289 3.91611 3.97222 4.34938 4.40581 4.57694 4.61474 4.65336 4.69429 4.91545 5.01170 5.30952 5.32953 5.34954 5.37853 5.77658 6.00586 6.33318 6.78734 6.80827 7.36586 8.88368 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.013698 B = 0.004262 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.541512 B = 6567.973733 C = 6964.652749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.144 4.144 3 C 0.040 3.960 4 C -0.697 4.697 5 S 2.714 3.286 6 O -0.982 6.982 7 O -0.976 6.976 8 N -1.100 6.100 9 C 0.255 3.745 10 C -0.548 4.548 11 H 0.074 0.926 12 C 0.012 3.988 13 N -0.923 5.923 14 Si 0.967 3.033 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.264 1.264 18 C 0.064 3.936 19 C -0.196 4.196 20 C 0.539 3.461 21 O -0.532 6.532 22 O -0.495 6.495 23 C 0.200 3.800 24 F -0.110 7.110 25 H 0.099 0.901 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.166 0.834 29 H 0.421 0.579 30 H 0.016 0.984 31 H 0.020 0.980 32 H 0.268 0.732 33 H 0.180 0.820 34 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.406 -10.880 8.483 14.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.146 4.146 3 C 0.020 3.980 4 C -0.784 4.784 5 S 2.803 3.197 6 O -0.972 6.972 7 O -0.966 6.966 8 N -0.862 5.862 9 C 0.130 3.870 10 C -0.588 4.588 11 H 0.093 0.907 12 C -0.189 4.189 13 N -0.562 5.562 14 Si 0.792 3.208 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.189 1.189 18 C 0.045 3.955 19 C -0.199 4.199 20 C 0.384 3.616 21 O -0.423 6.423 22 O -0.310 6.310 23 C 0.180 3.820 24 F -0.088 7.088 25 H 0.117 0.883 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.183 0.817 29 H 0.257 0.743 30 H 0.034 0.966 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.198 0.802 34 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges 1.935 -10.380 9.215 14.014 hybrid contribution 0.183 -0.993 -1.324 1.665 sum 2.119 -11.373 7.891 14.004 Atomic orbital electron populations 1.20919 0.86566 1.05047 1.04849 1.20258 0.99523 0.90210 1.04628 1.21273 0.91917 0.99450 0.85318 1.31109 1.06577 1.20859 1.19815 1.01113 0.72694 0.73411 0.72458 1.93548 1.67583 1.58625 1.77468 1.93539 1.39536 1.86065 1.77492 1.55282 1.16588 1.83889 1.30463 1.18758 0.83438 0.95243 0.89557 1.21622 0.94791 1.38542 1.03822 0.90749 1.25790 0.94904 0.96523 1.01647 1.70021 1.02257 1.47584 1.36359 0.85416 0.78160 0.78365 0.78883 1.19915 1.21038 1.18873 1.21248 1.01832 0.88276 0.84175 1.19236 0.91635 0.93133 1.15862 1.20229 0.81661 0.87788 0.71920 1.90943 1.70560 1.33507 1.47333 1.84512 1.18517 1.43114 1.84825 1.17876 0.88387 0.81865 0.93868 1.91590 1.79716 1.45448 1.92041 0.88260 0.90223 0.89036 0.81694 0.74316 0.96622 0.96224 0.92318 0.80231 0.69658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.28 9.83 71.24 0.70 -1.58 16 2 C -0.14 -3.66 5.88 -19.85 -0.12 -3.77 16 3 C 0.04 1.10 9.16 22.32 0.20 1.30 16 4 C -0.70 -20.18 5.94 22.23 0.13 -20.04 16 5 S 2.71 89.48 5.73 -56.49 -0.32 89.15 16 6 O -0.98 -37.96 16.74 -128.00 -2.14 -40.10 16 7 O -0.98 -32.88 17.27 -128.00 -2.21 -35.09 16 8 N -1.10 -40.05 5.99 -190.77 -1.14 -41.19 16 9 C 0.25 11.69 5.98 85.63 0.51 12.20 16 10 C -0.55 -27.66 9.27 25.60 0.24 -27.42 16 11 H 0.07 3.54 7.65 -2.91 -0.02 3.52 16 12 C 0.01 0.60 5.46 84.65 0.46 1.06 16 13 N -0.92 -50.45 13.29 21.45 0.28 -50.17 16 14 Si 0.97 40.62 29.54 68.60 2.03 42.65 16 15 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 16 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 18 C 0.06 1.67 9.08 22.53 0.20 1.87 16 19 C -0.20 -5.21 5.88 -20.06 -0.12 -5.33 16 20 C 0.54 13.37 8.27 70.28 0.58 13.95 16 21 O -0.53 -15.90 16.13 19.89 0.32 -15.58 16 22 O -0.50 -8.43 12.68 -56.38 -0.71 -9.14 16 23 C 0.20 5.44 7.23 22.69 0.16 5.61 16 24 F -0.11 -3.11 14.76 44.97 0.66 -2.44 16 25 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.08 1.48 7.64 -2.39 -0.02 1.46 16 27 H 0.09 1.69 8.08 -2.38 -0.02 1.67 16 28 H 0.17 4.40 7.61 -2.91 -0.02 4.37 16 29 H 0.42 13.72 8.54 -96.75 -0.83 12.89 16 30 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.02 0.99 7.75 -2.39 -0.02 0.97 16 32 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 33 H 0.18 4.01 7.16 -2.91 -0.02 3.99 16 34 H 0.44 2.96 9.11 -74.05 -0.67 2.29 16 Total: -1.00 -68.66 323.55 -0.59 -69.24 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -0.31 Total: 14.82 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: 2.96 Total: -22.15 kcal Atomic # 7 Polarization: -90.50 SS G_CDS: -0.86 Total: -91.36 kcal Atomic # 8 Polarization: -95.17 SS G_CDS: -4.75 Total: -99.92 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.66 Total: -2.44 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Atomic # 16 Polarization: 89.48 SS G_CDS: -0.32 Total: 89.15 kcal Total: -68.66 -0.59 -69.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158946258.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.092 kcal (2) G-P(sol) polarization free energy of solvation -68.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds