Wall clock time and date at job start Tue Mar 31 2020 12:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46934 * 2 1 4 4 N 1.46499 * 109.46834 * 179.97438 * 3 2 1 5 5 C 1.36972 * 120.00344 * 281.28454 * 4 3 2 6 6 H 1.08003 * 120.00497 * 315.49278 * 5 4 3 7 7 C 1.38968 * 119.99877 * 135.48785 * 5 4 3 8 8 N 1.31418 * 119.99958 * 336.09624 * 7 5 4 9 9 Si 1.86800 * 120.00062 * 156.10226 * 7 5 4 10 10 H 1.48503 * 109.47510 * 89.99631 * 9 7 5 11 11 H 1.48501 * 109.47097 * 209.99833 * 9 7 5 12 12 H 1.48508 * 109.46998 * 329.99652 * 9 7 5 13 13 C 1.34780 * 119.99707 * 101.29067 * 4 3 2 14 14 O 1.21663 * 119.99603 * 186.46195 * 13 4 3 15 15 C 1.47113 * 120.00131 * 6.46367 * 13 4 3 16 16 C 1.36097 * 123.47023 * 319.57006 * 15 13 4 17 17 S 1.70442 * 110.80787 * 180.28785 * 16 15 13 18 18 C 1.75504 * 92.45092 * 359.72303 * 17 16 15 19 19 S 1.76204 * 124.70376 * 179.97438 * 18 17 16 20 20 C 1.81403 * 104.44680 * 270.02423 * 19 18 17 21 21 O 1.42107 * 104.27431 * 26.09020 * 19 18 17 22 22 O 1.42096 * 104.28004 * 153.95058 * 19 18 17 23 23 C 1.32758 * 110.59659 * 359.97438 * 18 17 16 24 24 H 1.08994 * 109.47318 * 60.00156 * 1 2 3 25 25 H 1.09004 * 109.47017 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47397 * 299.99272 * 1 2 3 27 27 H 1.09004 * 109.46921 * 240.00787 * 2 1 3 28 28 H 1.08996 * 109.47607 * 120.00292 * 2 1 3 29 29 H 1.09004 * 109.46674 * 60.00636 * 3 2 1 30 30 H 1.08990 * 109.47599 * 300.00429 * 3 2 1 31 31 H 0.97004 * 120.00093 * 185.04913 * 8 7 5 32 32 H 1.08005 * 124.59511 * 359.97438 * 16 15 13 33 33 H 1.08994 * 109.47528 * 59.99552 * 20 19 18 34 34 H 1.08998 * 109.46971 * 180.02562 * 20 19 18 35 35 H 1.09000 * 109.46667 * 299.99232 * 20 19 18 36 36 H 1.07997 * 123.45725 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1894 1.2105 1.1642 6 1 3.8815 1.6969 2.0780 7 6 5.2800 0.3493 1.1689 8 7 5.3868 -0.5808 0.2466 9 14 6.5942 0.5137 2.4862 10 1 6.2355 -0.3336 3.6518 11 1 7.9023 0.0734 1.9380 12 1 6.6897 1.9320 2.9159 13 6 4.1793 1.6708 -1.1438 14 8 5.3901 1.5552 -1.1698 15 6 3.4512 2.0600 -2.3615 16 6 2.2618 1.5121 -2.7322 17 16 1.7119 2.1919 -4.1952 18 6 3.1078 3.2488 -4.3163 19 16 3.3889 4.3934 -5.6261 20 6 4.3212 3.4473 -6.8616 21 8 2.0880 4.6989 -6.1096 22 8 4.2088 5.3975 -5.0442 23 6 3.9226 3.0663 -3.2842 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.6766 1.9564 -0.8898 31 1 6.1079 -1.2280 0.2917 32 1 1.7399 0.7464 -2.1774 33 1 3.7285 2.5929 -7.1881 34 1 4.5415 4.0854 -7.7174 35 1 5.2543 3.0955 -6.4215 36 1 4.8460 3.6103 -3.1512 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160089231.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:00 Heat of formation + Delta-G solvation = -53.297094 kcal Electronic energy + Delta-G solvation = -22579.005040 eV Core-core repulsion = 19090.471723 eV Total energy + Delta-G solvation = -3488.533317 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -39.11654 -37.15328 -36.35243 -35.98669 -35.11361 -32.75393 -31.30336 -30.06806 -29.49787 -25.86952 -25.30159 -23.81827 -21.63486 -20.80137 -19.22817 -18.93349 -17.90239 -16.79425 -16.29310 -15.98197 -15.75409 -15.41538 -14.82335 -14.63442 -13.93846 -13.61717 -13.56084 -13.36966 -13.27602 -12.89591 -12.69214 -12.56638 -12.16296 -12.11913 -12.03527 -11.55343 -11.45589 -11.38802 -11.24340 -11.08632 -10.90864 -10.85782 -10.72397 -10.54695 -10.31513 -10.10030 -9.07572 -8.84301 -8.33551 -8.06446 -7.24208 -6.23293 -3.92877 -0.03238 0.75198 1.55874 2.00781 2.35243 2.80156 3.25959 3.36722 3.39870 3.78922 4.13778 4.21699 4.37435 4.60053 4.79458 4.89410 5.12726 5.15971 5.46168 5.46539 5.53756 5.57957 5.69149 5.76454 5.88847 5.98977 6.17163 6.25894 6.29111 6.34364 6.49816 6.69026 6.99737 7.54405 8.17746 8.92222 9.04045 9.52530 10.14472 10.84838 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.017016 B = 0.004615 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.154467 B = 6066.156458 C = 7221.259770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.090 3.910 4 N -0.435 5.435 5 C -0.355 4.355 6 H 0.082 0.918 7 C 0.080 3.920 8 N -0.821 5.821 9 Si 0.911 3.089 10 H -0.282 1.282 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.518 3.482 14 O -0.531 6.531 15 C -0.136 4.136 16 C -0.203 4.203 17 S 0.234 5.766 18 C -0.801 4.801 19 S 2.530 3.470 20 C -0.649 4.649 21 O -0.937 6.937 22 O -0.932 6.932 23 C 0.052 3.948 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.266 0.734 32 H 0.184 0.816 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.809 3.137 -11.394 14.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.034 4.034 4 N -0.155 5.155 5 C -0.481 4.481 6 H 0.100 0.900 7 C -0.133 4.133 8 N -0.453 5.453 9 Si 0.738 3.262 10 H -0.208 1.208 11 H -0.209 1.209 12 H -0.194 1.194 13 C 0.304 3.696 14 O -0.410 6.410 15 C -0.153 4.153 16 C -0.342 4.342 17 S 0.501 5.499 18 C -1.001 5.001 19 S 2.706 3.294 20 C -0.799 4.799 21 O -0.934 6.934 22 O -0.930 6.930 23 C 0.017 3.983 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.201 0.799 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.603 3.555 -12.418 15.520 hybrid contribution 2.061 -0.959 1.773 2.883 sum -6.542 2.596 -10.645 12.762 Atomic orbital electron populations 1.21782 0.96667 1.01121 1.01248 1.21875 0.93816 0.98349 1.03331 1.21886 0.84388 0.95952 1.01166 1.43148 1.02794 1.61733 1.07792 1.18955 1.13167 1.28327 0.87676 0.90022 1.25246 0.98403 0.93236 0.96376 1.69853 1.30397 1.11867 1.33175 0.86238 0.81064 0.78797 0.80119 1.20845 1.20878 1.19412 1.17261 0.86959 0.82889 0.82488 1.90655 1.13507 1.53422 1.83433 1.21129 0.95469 0.99071 0.99650 1.26527 1.00298 1.05393 1.01992 1.82586 1.19275 1.29509 1.18564 1.35086 1.11307 1.29208 1.24491 1.04417 0.75470 0.74483 0.75036 1.30223 1.16060 1.16165 1.17501 1.93578 1.36778 1.82203 1.80874 1.93593 1.70319 1.53128 1.75929 1.21064 0.97256 0.91500 0.88441 0.93444 0.93052 0.92767 0.92388 0.90417 0.92247 0.91491 0.92411 0.79883 0.84877 0.85058 0.84626 0.82049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.14 -2.38 5.34 -26.73 -0.14 -2.52 16 3 C 0.09 1.74 4.89 -4.04 -0.02 1.72 16 4 N -0.43 -10.68 2.52 -116.14 -0.29 -10.97 16 5 C -0.35 -9.51 9.10 -14.98 -0.14 -9.65 16 6 H 0.08 2.11 7.94 -52.48 -0.42 1.70 16 7 C 0.08 2.19 4.19 -17.46 -0.07 2.12 16 8 N -0.82 -23.63 11.99 55.50 0.67 -22.96 16 9 Si 0.91 21.54 29.62 -169.99 -5.03 16.51 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 C 0.52 13.13 6.92 -12.66 -0.09 13.04 16 14 O -0.53 -15.60 14.71 5.22 0.08 -15.52 16 15 C -0.14 -2.73 5.35 -104.63 -0.56 -3.29 16 16 C -0.20 -3.39 8.32 29.96 0.25 -3.14 16 17 S 0.23 3.16 22.78 -107.50 -2.45 0.71 16 18 C -0.80 -11.56 6.16 28.86 0.18 -11.38 16 19 S 2.53 29.72 5.93 -107.50 -0.64 29.08 16 20 C -0.65 -4.71 10.80 101.05 1.09 -3.62 16 21 O -0.94 -12.96 17.74 -57.54 -1.02 -13.98 16 22 O -0.93 -14.02 17.61 -57.54 -1.01 -15.04 16 23 C 0.05 0.92 9.88 -39.02 -0.39 0.53 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 1.08 6.80 -51.93 -0.35 0.72 16 28 H 0.08 1.55 8.12 -51.93 -0.42 1.13 16 29 H 0.06 1.09 8.13 -51.93 -0.42 0.67 16 30 H 0.07 1.17 4.50 -51.93 -0.23 0.93 16 31 H 0.27 7.32 8.32 -40.82 -0.34 6.98 16 32 H 0.18 2.91 4.36 -52.48 -0.23 2.69 16 33 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.14 0.91 8.14 -51.92 -0.42 0.49 16 36 H 0.16 2.74 8.01 -52.49 -0.42 2.32 16 LS Contribution 330.12 15.07 4.97 4.97 Total: -1.00 -36.12 330.12 -8.42 -44.54 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -4.17 Total: 0.46 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: 0.48 Total: -17.79 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.37 Total: -33.93 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -1.96 Total: -44.54 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Atomic # 16 Polarization: 32.88 SS G_CDS: -3.09 Total: 29.79 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -36.12 -8.42 -44.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160089231.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.760 kcal (2) G-P(sol) polarization free energy of solvation -36.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds