Wall clock time and date at job start Tue Mar 31 2020 12:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46934 * 2 1 4 4 N 1.46499 * 109.46834 * 179.97438 * 3 2 1 5 5 C 1.36972 * 120.00344 * 281.28454 * 4 3 2 6 6 H 1.08003 * 120.00497 * 315.49278 * 5 4 3 7 7 C 1.38968 * 119.99877 * 135.48785 * 5 4 3 8 8 N 1.31418 * 119.99958 * 336.09624 * 7 5 4 9 9 Si 1.86800 * 120.00062 * 156.10226 * 7 5 4 10 10 H 1.48503 * 109.47510 * 89.99631 * 9 7 5 11 11 H 1.48501 * 109.47097 * 209.99833 * 9 7 5 12 12 H 1.48508 * 109.46998 * 329.99652 * 9 7 5 13 13 C 1.34780 * 119.99707 * 101.29067 * 4 3 2 14 14 O 1.21663 * 119.99603 * 186.46195 * 13 4 3 15 15 C 1.47113 * 120.00131 * 6.46367 * 13 4 3 16 16 C 1.36097 * 123.47023 * 319.57006 * 15 13 4 17 17 S 1.70442 * 110.80787 * 180.28785 * 16 15 13 18 18 C 1.75504 * 92.45092 * 359.72303 * 17 16 15 19 19 S 1.76204 * 124.70376 * 179.97438 * 18 17 16 20 20 C 1.81403 * 104.44680 * 270.02423 * 19 18 17 21 21 O 1.42107 * 104.27431 * 26.09020 * 19 18 17 22 22 O 1.42096 * 104.28004 * 153.95058 * 19 18 17 23 23 C 1.32758 * 110.59659 * 359.97438 * 18 17 16 24 24 H 1.08994 * 109.47318 * 60.00156 * 1 2 3 25 25 H 1.09004 * 109.47017 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47397 * 299.99272 * 1 2 3 27 27 H 1.09004 * 109.46921 * 240.00787 * 2 1 3 28 28 H 1.08996 * 109.47607 * 120.00292 * 2 1 3 29 29 H 1.09004 * 109.46674 * 60.00636 * 3 2 1 30 30 H 1.08990 * 109.47599 * 300.00429 * 3 2 1 31 31 H 0.97004 * 120.00093 * 185.04913 * 8 7 5 32 32 H 1.08005 * 124.59511 * 359.97438 * 16 15 13 33 33 H 1.08994 * 109.47528 * 59.99552 * 20 19 18 34 34 H 1.08998 * 109.46971 * 180.02562 * 20 19 18 35 35 H 1.09000 * 109.46667 * 299.99232 * 20 19 18 36 36 H 1.07997 * 123.45725 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1894 1.2105 1.1642 6 1 3.8815 1.6969 2.0780 7 6 5.2800 0.3493 1.1689 8 7 5.3868 -0.5808 0.2466 9 14 6.5942 0.5137 2.4862 10 1 6.2355 -0.3336 3.6518 11 1 7.9023 0.0734 1.9380 12 1 6.6897 1.9320 2.9159 13 6 4.1793 1.6708 -1.1438 14 8 5.3901 1.5552 -1.1698 15 6 3.4512 2.0600 -2.3615 16 6 2.2618 1.5121 -2.7322 17 16 1.7119 2.1919 -4.1952 18 6 3.1078 3.2488 -4.3163 19 16 3.3889 4.3934 -5.6261 20 6 4.3212 3.4473 -6.8616 21 8 2.0880 4.6989 -6.1096 22 8 4.2088 5.3975 -5.0442 23 6 3.9226 3.0663 -3.2842 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.6766 1.9564 -0.8898 31 1 6.1079 -1.2280 0.2917 32 1 1.7399 0.7464 -2.1774 33 1 3.7285 2.5929 -7.1881 34 1 4.5415 4.0854 -7.7174 35 1 5.2543 3.0955 -6.4215 36 1 4.8460 3.6103 -3.1512 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160089231.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:59 Heat of formation + Delta-G solvation = -80.334007 kcal Electronic energy + Delta-G solvation = -22580.177449 eV Core-core repulsion = 19090.471723 eV Total energy + Delta-G solvation = -3489.705725 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.82171 -38.24452 -37.77856 -37.02500 -36.88728 -34.58130 -33.01410 -31.35587 -30.24735 -27.54706 -26.94825 -25.26976 -23.17954 -22.26274 -20.71295 -20.13249 -19.14775 -18.53919 -17.49712 -17.21963 -17.02305 -16.83404 -16.56939 -16.11577 -15.58907 -15.29687 -14.92434 -14.28234 -14.20907 -13.99540 -13.94380 -13.88355 -13.69895 -13.32710 -13.18797 -13.09117 -12.95501 -12.79502 -12.75542 -12.62238 -12.46568 -12.22529 -12.06659 -12.04385 -11.90206 -11.60118 -10.83912 -10.43088 -10.15232 -9.41267 -9.20499 -8.28678 -6.01970 -0.93485 -0.53070 0.37352 0.69995 0.90254 1.34944 1.43162 1.50296 1.81640 2.29126 2.54472 2.92104 3.04818 3.20048 3.29502 3.79555 4.04661 4.11109 4.11291 4.22761 4.25475 4.30261 4.48816 4.53436 4.64713 4.75289 4.82766 4.96141 5.01681 5.08285 5.20407 5.31347 5.44103 5.57097 6.15453 6.94310 7.09948 7.57161 8.22065 8.80113 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.017016 B = 0.004615 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.154467 B = 6066.156458 C = 7221.259770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C 0.087 3.913 4 N -0.451 5.451 5 C -0.375 4.375 6 H 0.083 0.917 7 C 0.034 3.966 8 N -0.859 5.859 9 Si 0.968 3.032 10 H -0.261 1.261 11 H -0.292 1.292 12 H -0.270 1.270 13 C 0.509 3.491 14 O -0.588 6.588 15 C -0.174 4.174 16 C -0.204 4.204 17 S 0.335 5.665 18 C -0.796 4.796 19 S 2.531 3.469 20 C -0.622 4.622 21 O -0.958 6.958 22 O -0.972 6.972 23 C 0.027 3.973 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.043 0.957 28 H 0.045 0.955 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.262 0.738 32 H 0.190 0.810 33 H 0.160 0.840 34 H 0.165 0.835 35 H 0.146 0.854 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.905 3.287 -13.737 17.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.164 4.164 3 C -0.036 4.036 4 N -0.170 5.170 5 C -0.502 4.502 6 H 0.100 0.900 7 C -0.175 4.175 8 N -0.492 5.492 9 Si 0.792 3.208 10 H -0.186 1.186 11 H -0.218 1.218 12 H -0.194 1.194 13 C 0.296 3.704 14 O -0.471 6.471 15 C -0.192 4.192 16 C -0.343 4.343 17 S 0.603 5.397 18 C -0.994 4.994 19 S 2.709 3.291 20 C -0.777 4.777 21 O -0.955 6.955 22 O -0.969 6.969 23 C -0.007 4.007 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.207 0.793 33 H 0.178 0.822 34 H 0.183 0.817 35 H 0.165 0.835 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.788 3.714 -14.685 18.596 hybrid contribution 2.581 -0.936 2.271 3.563 sum -8.207 2.778 -12.415 15.139 Atomic orbital electron populations 1.21718 0.92603 1.02636 1.02856 1.21742 0.97169 0.96412 1.01069 1.22122 0.81489 0.97479 1.02469 1.43404 1.04899 1.61495 1.07199 1.19215 1.14016 1.28217 0.88710 0.89960 1.26022 1.00082 0.92967 0.98386 1.69948 1.30987 1.12960 1.35342 0.85365 0.78122 0.78813 0.78465 1.18575 1.21812 1.19448 1.18010 0.86812 0.81481 0.84061 1.90586 1.16049 1.55632 1.84869 1.20751 0.97182 1.02109 0.99177 1.26673 0.99015 1.04806 1.03788 1.82251 1.16641 1.26317 1.14500 1.35582 1.10940 1.28642 1.24237 1.04511 0.75244 0.74265 0.75068 1.30041 1.15489 1.16471 1.15664 1.93549 1.38542 1.82764 1.80641 1.93548 1.70737 1.55377 1.77282 1.20854 0.98170 0.92290 0.89432 0.91182 0.91633 0.91789 0.93793 0.93642 0.91583 0.89375 0.92904 0.79306 0.82206 0.81747 0.83542 0.83075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.91 71.98 0.71 -2.64 16 2 C -0.13 -4.40 5.34 30.59 0.16 -4.24 16 3 C 0.09 3.39 4.89 86.38 0.42 3.81 16 4 N -0.45 -23.03 2.52 -639.57 -1.61 -24.64 16 5 C -0.37 -20.95 9.10 84.07 0.76 -20.19 16 6 H 0.08 4.43 7.94 -2.91 -0.02 4.40 16 7 C 0.03 1.93 4.19 84.93 0.36 2.28 16 8 N -0.86 -51.91 11.99 21.67 0.26 -51.65 16 9 Si 0.97 45.89 29.62 68.60 2.03 47.92 16 10 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 11 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 12 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 13 C 0.51 26.99 6.92 86.57 0.60 27.59 16 14 O -0.59 -36.65 14.71 -4.23 -0.06 -36.71 16 15 C -0.17 -7.14 5.35 -19.87 -0.11 -7.24 16 16 C -0.20 -6.51 8.32 67.32 0.56 -5.95 16 17 S 0.33 7.91 22.78 -56.49 -1.29 6.62 16 18 C -0.80 -21.57 6.16 66.64 0.41 -21.16 16 19 S 2.53 53.65 5.93 -56.49 -0.34 53.31 16 20 C -0.62 -6.14 10.80 113.37 1.22 -4.92 16 21 O -0.96 -23.78 17.74 -127.65 -2.26 -26.04 16 22 O -0.97 -28.64 17.61 -127.65 -2.25 -30.89 16 23 C 0.03 0.94 9.88 22.67 0.22 1.17 16 24 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.04 1.64 6.80 -2.38 -0.02 1.63 16 28 H 0.04 1.87 8.12 -2.39 -0.02 1.85 16 29 H 0.07 2.43 8.13 -2.38 -0.02 2.41 16 30 H 0.09 2.99 4.50 -2.39 -0.01 2.98 16 31 H 0.26 15.19 8.32 -92.71 -0.77 14.42 16 32 H 0.19 5.72 4.36 -2.91 -0.01 5.71 16 33 H 0.16 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.16 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.15 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.15 5.46 8.01 -2.91 -0.02 5.44 16 Total: -1.00 -84.55 330.12 0.92 -83.62 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 1.11 Total: 9.93 kcal Atomic # 6 Polarization: -36.81 SS G_CDS: 5.33 Total: -31.48 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -1.35 Total: -76.29 kcal Atomic # 8 Polarization: -89.06 SS G_CDS: -4.57 Total: -93.64 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Atomic # 16 Polarization: 61.55 SS G_CDS: -1.62 Total: 59.93 kcal Total: -84.55 0.92 -83.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160089231.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.291 kcal (2) G-P(sol) polarization free energy of solvation -84.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds