Wall clock time and date at job start Tue Mar 31 2020 11:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46505 * 119.99773 * 2 1 4 4 C 1.50706 * 109.46679 * 269.99755 * 3 2 1 5 5 H 1.07997 * 120.00301 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99656 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00239 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99932 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.46688 * 60.00421 * 8 6 4 10 10 H 1.48497 * 109.47202 * 180.02562 * 8 6 4 11 11 H 1.48492 * 109.47325 * 300.00659 * 8 6 4 12 12 C 1.34769 * 120.00354 * 179.97438 * 2 1 3 13 13 O 1.21276 * 120.00333 * 184.58589 * 12 2 1 14 14 C 1.50705 * 119.99896 * 4.58098 * 12 2 1 15 15 H 1.09002 * 109.47186 * 321.14919 * 14 12 2 16 16 O 1.42895 * 109.47099 * 201.14549 * 14 12 2 17 17 C 1.50697 * 109.47329 * 81.14335 * 14 12 2 18 18 C 1.38229 * 119.98333 * 72.28177 * 17 14 12 19 19 C 1.38359 * 120.01033 * 179.72860 * 18 17 14 20 20 Cl 1.73600 * 120.00780 * 180.27598 * 19 18 17 21 21 C 1.38332 * 119.98532 * 0.52936 * 19 18 17 22 22 C 1.38333 * 119.97509 * 359.74643 * 21 19 18 23 23 Cl 1.73603 * 120.00514 * 180.02562 * 22 21 19 24 24 C 1.38217 * 119.98781 * 252.56257 * 17 14 12 25 25 H 1.08997 * 109.46884 * 264.79915 * 1 2 3 26 26 H 1.08999 * 109.46991 * 24.79919 * 1 2 3 27 27 H 1.09001 * 109.47129 * 144.79748 * 1 2 3 28 28 H 1.08998 * 109.47086 * 29.99717 * 3 2 1 29 29 H 1.08992 * 109.47220 * 150.00089 * 3 2 1 30 30 H 0.96999 * 119.99723 * 179.97438 * 7 6 4 31 31 H 0.96700 * 114.00492 * 299.99582 * 16 14 12 32 32 H 1.07997 * 119.99424 * 0.02562 * 18 17 14 33 33 H 1.08002 * 120.01335 * 179.77262 * 21 19 18 34 34 H 1.07992 * 119.99810 * 359.97438 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0975 1.0961 -2.2418 6 6 3.1260 2.8780 -1.6729 7 7 3.5532 3.6182 -0.6733 8 14 3.4379 3.4168 -3.4341 9 1 2.1406 3.5935 -4.1347 10 1 4.1803 4.7029 -3.4341 11 1 4.2412 2.3821 -4.1334 12 6 2.1390 -1.1671 0.0005 13 8 3.3488 -1.1687 0.0845 14 6 1.3891 -2.4702 -0.1031 15 1 0.4717 -2.4091 0.4823 16 8 2.2050 -3.5305 0.3990 17 6 1.0471 -2.7397 -1.5458 18 6 2.0399 -3.1094 -2.4337 19 6 1.7256 -3.3623 -3.7572 20 17 2.9714 -3.8336 -4.8706 21 6 0.4194 -3.2345 -4.1942 22 6 -0.5728 -2.8590 -3.3064 23 17 -2.2125 -2.6990 -3.8538 24 6 -0.2582 -2.6114 -1.9820 25 1 -0.3633 -0.0932 1.0234 26 1 -0.3633 0.9329 -0.4310 27 1 -0.3633 -0.8397 -0.5924 28 1 1.6084 2.0284 0.5138 29 1 3.1499 1.1385 0.5138 30 1 4.0300 4.4441 -0.8507 31 1 3.0398 -3.6432 -0.0758 32 1 3.0603 -3.2054 -2.0933 33 1 0.1741 -3.4283 -5.2280 34 1 -1.0327 -2.3185 -1.2888 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161513461.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:49 Heat of formation + Delta-G solvation = -70.143451 kcal Electronic energy + Delta-G solvation = -22180.925221 eV Core-core repulsion = 18551.740884 eV Total energy + Delta-G solvation = -3629.184337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.47305 -38.84533 -36.94658 -36.74361 -36.09691 -34.92912 -32.77583 -31.78968 -30.87331 -28.39528 -26.99676 -25.63653 -23.14626 -23.07220 -21.91223 -19.15096 -18.10787 -17.15126 -16.59825 -16.47464 -16.08083 -15.63054 -15.18914 -14.66894 -14.58730 -14.34851 -13.88834 -13.67479 -13.27470 -12.67668 -12.56924 -12.50414 -12.22785 -12.10379 -12.01254 -11.67792 -11.41080 -11.26959 -11.26152 -11.12940 -10.95780 -10.75982 -10.59391 -10.22162 -9.73248 -9.38872 -8.92983 -8.72876 -8.48751 -7.78884 -6.10107 -4.15496 0.75973 0.77886 1.60496 2.06755 2.99241 3.23551 3.28399 3.32972 3.36350 3.71104 4.28747 4.40379 4.43386 4.63647 4.76137 4.83107 4.84829 5.01799 5.20210 5.24754 5.34551 5.48614 5.74630 5.78302 5.83658 6.02049 6.09632 6.24372 6.90999 7.33415 7.39872 7.45651 7.85208 8.15146 8.22264 8.73538 8.91394 9.49830 10.97984 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.010272 B = 0.005094 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.129988 B = 5494.819618 C = 5852.561479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.591 5.591 3 C 0.244 3.756 4 C -0.529 4.529 5 H 0.056 0.944 6 C 0.064 3.936 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.484 3.516 13 O -0.532 6.532 14 C 0.132 3.868 15 H 0.128 0.872 16 O -0.533 6.533 17 C -0.082 4.082 18 C -0.085 4.085 19 C -0.017 4.017 20 Cl -0.055 7.055 21 C -0.101 4.101 22 C -0.021 4.021 23 Cl -0.057 7.057 24 C -0.092 4.092 25 H 0.050 0.950 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.034 0.966 29 H 0.046 0.954 30 H 0.265 0.735 31 H 0.384 0.616 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.184 -14.966 -4.484 18.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.324 5.324 3 C 0.125 3.875 4 C -0.568 4.568 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.532 5.532 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.269 3.731 13 O -0.409 6.409 14 C 0.069 3.931 15 H 0.146 0.854 16 O -0.339 6.339 17 C -0.083 4.083 18 C -0.104 4.104 19 C -0.044 4.044 20 Cl -0.026 7.026 21 C -0.120 4.120 22 C -0.048 4.048 23 Cl -0.028 7.028 24 C -0.111 4.111 25 H 0.068 0.932 26 H 0.100 0.900 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.234 0.766 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.960 -14.857 -4.119 18.355 hybrid contribution 0.498 0.611 -1.646 1.825 sum -9.462 -14.246 -5.765 18.048 Atomic orbital electron populations 1.21909 0.81412 1.03459 1.00545 1.48146 1.06248 1.07753 1.70214 1.19368 0.92706 0.77763 0.97667 1.21349 1.36917 1.06452 0.92064 0.92536 1.24912 0.95253 0.96317 0.97398 1.69917 1.38109 1.14338 1.30801 0.86592 0.78475 0.77941 0.84685 1.20163 1.21066 1.20112 1.20798 0.88482 0.85539 0.78323 1.90687 1.13628 1.86612 1.49993 1.20806 0.95276 0.86924 0.90110 0.85414 1.86578 1.35160 1.51132 1.61020 1.20109 0.92898 0.99153 0.96147 1.20960 1.00591 0.97702 0.91152 1.20625 0.89659 1.02954 0.91210 1.98392 1.52307 1.90208 1.61684 1.20896 0.90190 1.00402 1.00519 1.20609 0.86407 1.03809 0.93940 1.98386 1.18228 1.96263 1.89922 1.20998 0.96437 0.99259 0.94404 0.93182 0.90042 0.92480 0.94756 0.93607 0.92567 0.76602 0.83911 0.83737 0.83626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.04 9.83 59.85 0.59 1.63 16 2 N -0.59 -11.96 2.86 -182.95 -0.52 -12.48 16 3 C 0.24 6.21 5.17 -5.19 -0.03 6.18 16 4 C -0.53 -14.66 9.39 -34.44 -0.32 -14.98 16 5 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 6 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 7 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 8 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.48 9.53 6.80 -10.99 -0.07 9.45 16 13 O -0.53 -12.63 15.89 -13.40 -0.21 -12.84 16 14 C 0.13 1.91 2.89 -29.03 -0.08 1.82 16 15 H 0.13 1.52 6.82 -51.93 -0.35 1.17 16 16 O -0.53 -7.67 13.05 -54.19 -0.71 -8.37 16 17 C -0.08 -1.09 4.77 -104.63 -0.50 -1.59 16 18 C -0.09 -1.17 8.97 -39.54 -0.35 -1.52 16 19 C -0.02 -0.22 6.32 -39.50 -0.25 -0.47 16 20 Cl -0.05 -0.67 28.96 -51.86 -1.50 -2.17 16 21 C -0.10 -1.17 9.62 -39.51 -0.38 -1.55 16 22 C -0.02 -0.24 6.32 -39.50 -0.25 -0.49 16 23 Cl -0.06 -0.58 28.96 -51.86 -1.50 -2.09 16 24 C -0.09 -1.08 8.10 -39.54 -0.32 -1.40 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 1.25 8.03 -51.93 -0.42 0.84 16 27 H 0.06 0.69 3.47 -51.93 -0.18 0.51 16 28 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 29 H 0.05 1.32 7.36 -51.93 -0.38 0.94 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.38 4.91 7.36 45.56 0.34 5.24 16 32 H 0.14 1.91 7.13 -52.49 -0.37 1.54 16 33 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.15 1.35 6.62 -52.49 -0.35 1.01 16 LS Contribution 324.67 15.07 4.89 4.89 Total: -1.00 -32.35 324.67 -8.44 -40.79 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -2.53 Total: 2.27 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -2.07 Total: -1.21 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.21 Total: -37.92 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.92 Total: -21.21 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -3.00 Total: -4.25 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.35 -8.44 -40.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161513461.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.356 kcal (2) G-P(sol) polarization free energy of solvation -32.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds