Wall clock time and date at job start Tue Mar 31 2020 11:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46505 * 119.99773 * 2 1 4 4 C 1.50706 * 109.46679 * 269.99755 * 3 2 1 5 5 H 1.07997 * 120.00301 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99656 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00239 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99932 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.46688 * 60.00421 * 8 6 4 10 10 H 1.48497 * 109.47202 * 180.02562 * 8 6 4 11 11 H 1.48492 * 109.47325 * 300.00659 * 8 6 4 12 12 C 1.34769 * 120.00354 * 179.97438 * 2 1 3 13 13 O 1.21276 * 120.00333 * 184.58589 * 12 2 1 14 14 C 1.50705 * 119.99896 * 4.58098 * 12 2 1 15 15 H 1.09002 * 109.47186 * 321.14919 * 14 12 2 16 16 O 1.42895 * 109.47099 * 201.14549 * 14 12 2 17 17 C 1.50697 * 109.47329 * 81.14335 * 14 12 2 18 18 C 1.38229 * 119.98333 * 72.28177 * 17 14 12 19 19 C 1.38359 * 120.01033 * 179.72860 * 18 17 14 20 20 Cl 1.73600 * 120.00780 * 180.27598 * 19 18 17 21 21 C 1.38332 * 119.98532 * 0.52936 * 19 18 17 22 22 C 1.38333 * 119.97509 * 359.74643 * 21 19 18 23 23 Cl 1.73603 * 120.00514 * 180.02562 * 22 21 19 24 24 C 1.38217 * 119.98781 * 252.56257 * 17 14 12 25 25 H 1.08997 * 109.46884 * 264.79915 * 1 2 3 26 26 H 1.08999 * 109.46991 * 24.79919 * 1 2 3 27 27 H 1.09001 * 109.47129 * 144.79748 * 1 2 3 28 28 H 1.08998 * 109.47086 * 29.99717 * 3 2 1 29 29 H 1.08992 * 109.47220 * 150.00089 * 3 2 1 30 30 H 0.96999 * 119.99723 * 179.97438 * 7 6 4 31 31 H 0.96700 * 114.00492 * 299.99582 * 16 14 12 32 32 H 1.07997 * 119.99424 * 0.02562 * 18 17 14 33 33 H 1.08002 * 120.01335 * 179.77262 * 21 19 18 34 34 H 1.07992 * 119.99810 * 359.97438 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0975 1.0961 -2.2418 6 6 3.1260 2.8780 -1.6729 7 7 3.5532 3.6182 -0.6733 8 14 3.4379 3.4168 -3.4341 9 1 2.1406 3.5935 -4.1347 10 1 4.1803 4.7029 -3.4341 11 1 4.2412 2.3821 -4.1334 12 6 2.1390 -1.1671 0.0005 13 8 3.3488 -1.1687 0.0845 14 6 1.3891 -2.4702 -0.1031 15 1 0.4717 -2.4091 0.4823 16 8 2.2050 -3.5305 0.3990 17 6 1.0471 -2.7397 -1.5458 18 6 2.0399 -3.1094 -2.4337 19 6 1.7256 -3.3623 -3.7572 20 17 2.9714 -3.8336 -4.8706 21 6 0.4194 -3.2345 -4.1942 22 6 -0.5728 -2.8590 -3.3064 23 17 -2.2125 -2.6990 -3.8538 24 6 -0.2582 -2.6114 -1.9820 25 1 -0.3633 -0.0932 1.0234 26 1 -0.3633 0.9329 -0.4310 27 1 -0.3633 -0.8397 -0.5924 28 1 1.6084 2.0284 0.5138 29 1 3.1499 1.1385 0.5138 30 1 4.0300 4.4441 -0.8507 31 1 3.0398 -3.6432 -0.0758 32 1 3.0603 -3.2054 -2.0933 33 1 0.1741 -3.4283 -5.2280 34 1 -1.0327 -2.3185 -1.2888 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161513461.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:49 Heat of formation + Delta-G solvation = -90.749332 kcal Electronic energy + Delta-G solvation = -22181.818759 eV Core-core repulsion = 18551.740884 eV Total energy + Delta-G solvation = -3630.077875 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.67365 -40.10577 -37.89253 -37.83299 -37.17464 -36.52577 -34.79144 -32.90638 -31.82067 -30.14527 -28.28794 -27.17391 -24.89165 -24.02235 -23.12628 -20.60965 -19.15625 -18.66154 -18.50778 -17.75953 -17.08574 -16.97388 -16.52774 -16.28518 -15.81296 -15.52318 -15.08642 -14.84828 -14.74013 -14.31985 -13.84099 -13.58204 -13.43764 -13.39928 -13.20193 -13.14656 -12.95394 -12.70742 -12.54563 -12.49026 -12.24969 -12.19967 -12.02475 -11.77220 -11.74739 -10.68315 -10.65341 -9.93933 -9.86479 -9.47366 -8.24103 -6.38357 -0.20354 -0.17488 0.69288 1.14896 1.34969 1.38366 1.45297 1.59439 2.13527 2.26403 2.40171 3.06138 3.23174 3.32146 3.55358 3.76370 3.79159 3.86260 4.00134 4.24905 4.30982 4.38640 4.66486 4.81494 4.88070 4.92333 4.98522 5.05043 5.21272 5.29924 5.51419 5.78238 6.03240 6.32619 6.63421 6.71883 7.20164 7.35783 8.82943 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.010272 B = 0.005094 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.129988 B = 5494.819618 C = 5852.561479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.598 5.598 3 C 0.258 3.742 4 C -0.540 4.540 5 H 0.053 0.947 6 C 0.012 3.988 7 N -0.926 5.926 8 Si 0.959 3.041 9 H -0.260 1.260 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.474 3.526 13 O -0.585 6.585 14 C 0.150 3.850 15 H 0.162 0.838 16 O -0.537 6.537 17 C -0.094 4.094 18 C -0.101 4.101 19 C -0.028 4.028 20 Cl -0.054 7.054 21 C -0.097 4.097 22 C -0.024 4.024 23 Cl -0.041 7.041 24 C -0.087 4.087 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.027 0.973 29 H 0.000 1.000 30 H 0.267 0.733 31 H 0.389 0.611 32 H 0.135 0.865 33 H 0.163 0.837 34 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.537 -15.757 -5.729 20.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.330 5.330 3 C 0.136 3.864 4 C -0.578 4.578 5 H 0.071 0.929 6 C -0.187 4.187 7 N -0.566 5.566 8 Si 0.783 3.217 9 H -0.185 1.185 10 H -0.203 1.203 11 H -0.204 1.204 12 C 0.262 3.738 13 O -0.466 6.466 14 C 0.087 3.913 15 H 0.179 0.821 16 O -0.343 6.343 17 C -0.096 4.096 18 C -0.120 4.120 19 C -0.055 4.055 20 Cl -0.025 7.025 21 C -0.116 4.116 22 C -0.051 4.051 23 Cl -0.012 7.012 24 C -0.105 4.105 25 H 0.100 0.900 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.045 0.955 29 H 0.018 0.982 30 H 0.076 0.924 31 H 0.240 0.760 32 H 0.152 0.848 33 H 0.180 0.820 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -12.366 -15.671 -5.366 20.671 hybrid contribution 1.199 0.818 -1.258 1.921 sum -11.167 -14.853 -6.624 19.728 Atomic orbital electron populations 1.22231 0.77857 1.04482 1.03233 1.48133 1.08452 1.06244 1.70141 1.18817 0.91287 0.80158 0.96091 1.21612 1.36866 1.06499 0.92863 0.92871 1.25775 0.94971 0.96471 1.01532 1.70033 1.38821 1.14800 1.32939 0.85597 0.78918 0.77470 0.79687 1.18453 1.20333 1.20381 1.21835 0.88239 0.87044 0.76706 1.90652 1.16232 1.87631 1.52107 1.20755 0.95295 0.83534 0.91677 0.82062 1.86557 1.35611 1.50669 1.61447 1.20011 0.93740 1.00549 0.95282 1.21047 1.00589 0.98460 0.91932 1.20700 0.90297 1.03511 0.90994 1.98389 1.52445 1.90220 1.61492 1.21146 0.89670 0.99286 1.01517 1.20698 0.87133 1.03342 0.93929 1.98398 1.16913 1.96138 1.89769 1.21260 0.96185 0.98056 0.95025 0.89969 0.90736 0.89411 0.95500 0.98221 0.92382 0.76024 0.84754 0.81977 0.80830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.72 9.83 127.77 1.26 2.98 16 2 N -0.60 -24.05 2.86 -851.12 -2.43 -26.48 16 3 C 0.26 13.53 5.17 85.63 0.44 13.97 16 4 C -0.54 -30.35 9.39 25.60 0.24 -30.11 16 5 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 6 C 0.01 0.68 5.46 84.65 0.46 1.14 16 7 N -0.93 -55.36 13.29 21.45 0.28 -55.08 16 8 Si 0.96 44.40 29.54 68.60 2.03 46.42 16 9 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 C 0.47 18.69 6.80 87.66 0.60 19.28 16 13 O -0.59 -28.86 15.89 15.11 0.24 -28.62 16 14 C 0.15 4.07 2.89 29.10 0.08 4.16 16 15 H 0.16 3.23 6.82 -2.39 -0.02 3.21 16 16 O -0.54 -14.89 13.05 -130.85 -1.71 -16.60 16 17 C -0.09 -2.34 4.77 -19.87 -0.09 -2.44 16 18 C -0.10 -2.70 8.97 22.30 0.20 -2.50 16 19 C -0.03 -0.68 6.32 22.32 0.14 -0.54 16 20 Cl -0.05 -1.28 28.96 -2.72 -0.08 -1.36 16 21 C -0.10 -2.03 9.62 22.31 0.21 -1.82 16 22 C -0.02 -0.48 6.32 22.32 0.14 -0.34 16 23 Cl -0.04 -0.71 28.96 -2.72 -0.08 -0.79 16 24 C -0.09 -1.74 8.10 22.29 0.18 -1.56 16 25 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.07 2.15 8.03 -2.39 -0.02 2.13 16 27 H 0.09 1.80 3.47 -2.39 -0.01 1.79 16 28 H 0.03 1.43 8.07 -2.39 -0.02 1.41 16 29 H 0.00 -0.02 7.36 -2.39 -0.02 -0.04 16 30 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 31 H 0.39 10.03 7.36 -74.06 -0.55 9.48 16 32 H 0.13 3.70 7.13 -2.91 -0.02 3.68 16 33 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 34 H 0.17 2.38 6.62 -2.91 -0.02 2.36 16 Total: -1.00 -71.95 324.67 2.74 -69.21 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 0.62 Total: 11.07 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 3.86 Total: 2.23 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -2.15 Total: -81.56 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -1.47 Total: -45.22 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -0.16 Total: -2.14 kcal Total: -71.95 2.74 -69.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161513461.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.538 kcal (2) G-P(sol) polarization free energy of solvation -71.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds