Wall clock time and date at job start Tue Mar 31 2020 12:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47239 * 2 1 4 4 N 1.46499 * 109.47188 * 179.97438 * 3 2 1 5 5 C 1.36880 * 120.00014 * 264.42529 * 4 3 2 6 6 H 1.07997 * 119.99881 * 131.90138 * 5 4 3 7 7 C 1.38999 * 120.00395 * 311.89433 * 5 4 3 8 8 N 1.31399 * 120.00160 * 170.20004 * 7 5 4 9 9 Si 1.86801 * 119.99792 * 350.20568 * 7 5 4 10 10 H 1.48501 * 109.47217 * 91.66547 * 9 7 5 11 11 H 1.48503 * 109.47161 * 211.66088 * 9 7 5 12 12 H 1.48494 * 109.47283 * 331.66352 * 9 7 5 13 13 C 1.34779 * 119.99827 * 84.42853 * 4 3 2 14 14 O 1.21748 * 119.99764 * 3.71043 * 13 4 3 15 15 C 1.46453 * 120.00215 * 183.70868 * 13 4 3 16 16 C 1.36763 * 125.46270 * 173.53983 * 15 13 4 17 17 C 1.37444 * 113.27924 * 180.02562 * 16 15 13 18 18 S 1.76195 * 122.45065 * 179.97438 * 17 16 15 19 19 C 1.81401 * 104.45026 * 89.99538 * 18 17 16 20 20 O 1.42103 * 104.27976 * 206.06987 * 18 17 16 21 21 O 1.42101 * 104.27479 * 333.92830 * 18 17 16 22 22 C 1.33857 * 115.10788 * 359.97438 * 17 16 15 23 23 S 1.70612 * 110.96516 * 359.72588 * 22 17 16 24 24 H 1.09000 * 109.47167 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46777 * 299.99779 * 1 2 3 26 26 H 1.09000 * 109.47196 * 59.99754 * 1 2 3 27 27 H 1.09001 * 109.47456 * 240.00539 * 2 1 3 28 28 H 1.09000 * 109.47196 * 120.00246 * 2 1 3 29 29 H 1.09005 * 109.46925 * 59.99896 * 3 2 1 30 30 H 1.09000 * 109.47227 * 300.00226 * 3 2 1 31 31 H 0.97005 * 119.99851 * 180.02562 * 8 7 5 32 32 H 1.08001 * 123.36299 * 0.02562 * 16 15 13 33 33 H 1.09004 * 109.46915 * 60.00371 * 19 18 17 34 34 H 1.08998 * 109.47192 * 180.02562 * 19 18 17 35 35 H 1.08994 * 109.47153 * 300.00335 * 19 18 17 36 36 H 1.07996 * 124.51516 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1889 1.5578 1.1807 6 1 4.9997 0.8801 1.4033 7 6 3.8400 2.5473 2.0925 8 7 4.3596 2.5414 3.2993 9 14 2.6321 3.8852 1.6021 10 1 1.2543 3.4645 1.9624 11 1 2.9687 5.1423 2.3174 12 1 2.7131 4.1124 0.1369 13 6 4.1794 1.3290 -1.1608 14 8 3.5729 1.2945 -2.2159 15 6 5.6416 1.2472 -1.1536 16 6 6.4282 1.0061 -2.2461 17 6 7.7710 0.9817 -1.9540 18 16 9.0005 0.6903 -3.1818 19 6 9.4152 2.3415 -3.8081 20 8 10.0943 0.1418 -2.4593 21 8 8.3277 -0.0665 -4.1787 22 6 8.0765 1.1956 -0.6684 23 16 6.6677 1.4511 0.2595 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 4.1158 3.2318 3.9357 32 1 6.0336 0.8503 -3.2393 33 1 9.7938 2.9555 -2.9908 34 1 10.1780 2.2556 -4.5819 35 1 8.5228 2.8055 -4.2279 36 1 9.0811 1.2090 -0.2722 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161824105.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:56 Heat of formation + Delta-G solvation = -70.315823 kcal Electronic energy + Delta-G solvation = -22452.012502 eV Core-core repulsion = 18962.741197 eV Total energy + Delta-G solvation = -3489.271304 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -39.15156 -37.14764 -36.87388 -35.72891 -35.33082 -33.33480 -31.96384 -29.64683 -29.31152 -26.31540 -25.47383 -24.13100 -21.82210 -20.67043 -19.16638 -18.30986 -18.13972 -16.83555 -16.29288 -16.06673 -15.92590 -15.39988 -15.03290 -14.51849 -14.19455 -13.98387 -13.64093 -13.27629 -13.20430 -12.96535 -12.77430 -12.49471 -12.31397 -12.18218 -11.91046 -11.84297 -11.79143 -11.70585 -11.15594 -11.12322 -11.05845 -10.82782 -10.74043 -10.35103 -10.06093 -9.79250 -9.32438 -8.98297 -8.45337 -8.23267 -7.87829 -6.83781 -4.62692 0.25017 1.08100 2.26043 2.36714 2.64299 2.88317 3.01914 3.09277 3.23070 3.82381 3.96259 4.11330 4.14159 4.31505 4.62333 4.75854 5.00551 5.34208 5.44849 5.50818 5.59715 5.67471 5.79496 5.87220 5.96928 6.17903 6.21531 6.23676 6.33654 6.46066 6.64602 6.75036 6.76816 7.11549 7.66691 7.81114 8.54753 8.97506 9.36172 10.20513 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.018763 B = 0.004643 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.947965 B = 6028.990656 C = 6832.038454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.105 3.895 4 N -0.465 5.465 5 C -0.353 4.353 6 H 0.114 0.886 7 C 0.082 3.918 8 N -0.838 5.838 9 Si 0.885 3.115 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.256 1.256 13 C 0.554 3.446 14 O -0.581 6.581 15 C -0.248 4.248 16 C -0.030 4.030 17 C -0.681 4.681 18 S 2.515 3.485 19 C -0.652 4.652 20 O -0.948 6.948 21 O -0.943 6.943 22 C -0.229 4.229 23 S 0.384 5.616 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.284 0.716 32 H 0.153 0.847 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.380 2.010 -4.851 6.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C -0.018 4.018 4 N -0.186 5.186 5 C -0.487 4.487 6 H 0.130 0.870 7 C -0.131 4.131 8 N -0.470 5.470 9 Si 0.711 3.289 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.180 1.180 13 C 0.344 3.656 14 O -0.466 6.466 15 C -0.370 4.370 16 C -0.061 4.061 17 C -0.784 4.784 18 S 2.695 3.305 19 C -0.801 4.801 20 O -0.945 6.945 21 O -0.941 6.941 22 C -0.369 4.369 23 S 0.659 5.341 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.171 0.829 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.150 0.850 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.243 1.598 -3.887 5.971 hybrid contribution -0.552 1.123 -1.104 1.669 sum 3.690 2.720 -4.991 6.777 Atomic orbital electron populations 1.21701 0.96092 1.01244 1.01457 1.21793 0.95082 0.97685 1.02640 1.21688 0.81758 0.96956 1.01354 1.43527 1.04377 1.65083 1.05569 1.18945 1.17468 1.17331 0.94936 0.86972 1.25523 0.96454 0.96562 0.94543 1.69653 1.40509 1.33161 1.03660 0.86733 0.80787 0.80807 0.80578 1.19284 1.20840 1.17971 1.17196 0.84829 0.79760 0.83862 1.90699 1.69077 1.55801 1.31008 1.24832 0.98413 1.15348 0.98364 1.20058 0.89576 0.96738 0.99690 1.28811 1.11704 1.25868 1.12024 1.04577 0.74401 0.76909 0.74652 1.30235 1.12197 1.24740 1.12968 1.93539 1.53446 1.75388 1.72159 1.93556 1.74192 1.66614 1.59709 1.26740 1.10490 0.99832 0.99853 1.85178 0.88095 1.55788 1.05050 0.92895 0.92946 0.92913 0.91789 0.91315 0.91264 0.91238 0.90558 0.82939 0.85239 0.85635 0.84991 0.81594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.13 -2.42 6.22 -26.73 -0.17 -2.59 16 3 C 0.11 2.17 3.85 -4.04 -0.02 2.15 16 4 N -0.47 -10.60 2.05 -116.37 -0.24 -10.83 16 5 C -0.35 -8.21 7.43 -15.02 -0.11 -8.32 16 6 H 0.11 2.67 5.42 -30.22 -0.16 2.51 16 7 C 0.08 1.91 5.40 -17.45 -0.09 1.82 16 8 N -0.84 -20.09 13.96 55.50 0.77 -19.31 16 9 Si 0.88 18.62 24.86 -169.99 -4.23 14.39 16 10 H -0.27 -5.37 6.75 56.52 0.38 -4.99 16 11 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 12 H -0.26 -5.60 7.09 56.52 0.40 -5.20 16 13 C 0.55 12.93 7.56 -12.95 -0.10 12.83 16 14 O -0.58 -14.51 16.50 5.15 0.08 -14.43 16 15 C -0.25 -5.20 6.30 -36.81 -0.23 -5.43 16 16 C -0.03 -0.57 9.48 -40.40 -0.38 -0.95 16 17 C -0.68 -11.10 5.55 -41.41 -0.23 -11.33 16 18 S 2.52 33.71 5.85 -107.50 -0.63 33.08 16 19 C -0.65 -5.66 10.80 101.05 1.09 -4.57 16 20 O -0.95 -14.97 17.46 -57.54 -1.00 -15.97 16 21 O -0.94 -15.73 17.47 -57.54 -1.01 -16.73 16 22 C -0.23 -3.66 10.34 29.19 0.30 -3.36 16 23 S 0.38 7.13 18.33 -107.50 -1.97 5.16 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.07 1.42 4.02 -51.93 -0.21 1.21 16 30 H 0.07 1.44 7.54 -51.93 -0.39 1.05 16 31 H 0.28 6.35 8.31 -40.82 -0.34 6.01 16 32 H 0.15 2.82 7.93 -52.49 -0.42 2.40 16 33 H 0.13 0.94 8.14 -51.92 -0.42 0.52 16 34 H 0.13 0.82 8.14 -51.92 -0.42 0.39 16 35 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.17 2.20 7.93 -52.49 -0.42 1.78 16 LS Contribution 326.54 15.07 4.92 4.92 Total: -1.00 -30.88 326.54 -7.00 -37.87 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -4.13 Total: 3.38 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: 0.43 Total: -21.52 kcal Atomic # 7 Polarization: -30.68 SS G_CDS: 0.54 Total: -30.15 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: -1.92 Total: -47.14 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -4.23 Total: 14.39 kcal Atomic # 16 Polarization: 40.84 SS G_CDS: -2.60 Total: 38.24 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.88 -7.00 -37.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161824105.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.442 kcal (2) G-P(sol) polarization free energy of solvation -30.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds