Wall clock time and date at job start Tue Mar 31 2020 12:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47239 * 2 1 4 4 N 1.46499 * 109.47188 * 179.97438 * 3 2 1 5 5 C 1.36880 * 120.00014 * 264.42529 * 4 3 2 6 6 H 1.07997 * 119.99881 * 131.90138 * 5 4 3 7 7 C 1.38999 * 120.00395 * 311.89433 * 5 4 3 8 8 N 1.31399 * 120.00160 * 170.20004 * 7 5 4 9 9 Si 1.86801 * 119.99792 * 350.20568 * 7 5 4 10 10 H 1.48501 * 109.47217 * 91.66547 * 9 7 5 11 11 H 1.48503 * 109.47161 * 211.66088 * 9 7 5 12 12 H 1.48494 * 109.47283 * 331.66352 * 9 7 5 13 13 C 1.34779 * 119.99827 * 84.42853 * 4 3 2 14 14 O 1.21748 * 119.99764 * 3.71043 * 13 4 3 15 15 C 1.46453 * 120.00215 * 183.70868 * 13 4 3 16 16 C 1.36763 * 125.46270 * 173.53983 * 15 13 4 17 17 C 1.37444 * 113.27924 * 180.02562 * 16 15 13 18 18 S 1.76195 * 122.45065 * 179.97438 * 17 16 15 19 19 C 1.81401 * 104.45026 * 89.99538 * 18 17 16 20 20 O 1.42103 * 104.27976 * 206.06987 * 18 17 16 21 21 O 1.42101 * 104.27479 * 333.92830 * 18 17 16 22 22 C 1.33857 * 115.10788 * 359.97438 * 17 16 15 23 23 S 1.70612 * 110.96516 * 359.72588 * 22 17 16 24 24 H 1.09000 * 109.47167 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46777 * 299.99779 * 1 2 3 26 26 H 1.09000 * 109.47196 * 59.99754 * 1 2 3 27 27 H 1.09001 * 109.47456 * 240.00539 * 2 1 3 28 28 H 1.09000 * 109.47196 * 120.00246 * 2 1 3 29 29 H 1.09005 * 109.46925 * 59.99896 * 3 2 1 30 30 H 1.09000 * 109.47227 * 300.00226 * 3 2 1 31 31 H 0.97005 * 119.99851 * 180.02562 * 8 7 5 32 32 H 1.08001 * 123.36299 * 0.02562 * 16 15 13 33 33 H 1.09004 * 109.46915 * 60.00371 * 19 18 17 34 34 H 1.08998 * 109.47192 * 180.02562 * 19 18 17 35 35 H 1.08994 * 109.47153 * 300.00335 * 19 18 17 36 36 H 1.07996 * 124.51516 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1889 1.5578 1.1807 6 1 4.9997 0.8801 1.4033 7 6 3.8400 2.5473 2.0925 8 7 4.3596 2.5414 3.2993 9 14 2.6321 3.8852 1.6021 10 1 1.2543 3.4645 1.9624 11 1 2.9687 5.1423 2.3174 12 1 2.7131 4.1124 0.1369 13 6 4.1794 1.3290 -1.1608 14 8 3.5729 1.2945 -2.2159 15 6 5.6416 1.2472 -1.1536 16 6 6.4282 1.0061 -2.2461 17 6 7.7710 0.9817 -1.9540 18 16 9.0005 0.6903 -3.1818 19 6 9.4152 2.3415 -3.8081 20 8 10.0943 0.1418 -2.4593 21 8 8.3277 -0.0665 -4.1787 22 6 8.0765 1.1956 -0.6684 23 16 6.6677 1.4511 0.2595 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 4.1158 3.2318 3.9357 32 1 6.0336 0.8503 -3.2393 33 1 9.7938 2.9555 -2.9908 34 1 10.1780 2.2556 -4.5819 35 1 8.5228 2.8055 -4.2279 36 1 9.0811 1.2090 -0.2722 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161824105.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:55 Heat of formation + Delta-G solvation = -92.494260 kcal Electronic energy + Delta-G solvation = -22452.974231 eV Core-core repulsion = 18962.741197 eV Total energy + Delta-G solvation = -3490.233033 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.88594 -38.61130 -38.04657 -37.09214 -36.88588 -34.92181 -33.65891 -30.96879 -30.22157 -27.81559 -27.18990 -25.59429 -23.25459 -22.20831 -20.80416 -19.69352 -19.48891 -18.48559 -17.60638 -17.48889 -17.10254 -16.98306 -16.39375 -16.17389 -15.84071 -15.51260 -15.04696 -14.54449 -14.39845 -14.07537 -13.97084 -13.85659 -13.72929 -13.69300 -13.39006 -13.26354 -13.10129 -12.98943 -12.72170 -12.56202 -12.41947 -12.26973 -11.95557 -11.87012 -11.65710 -11.36665 -10.92985 -10.76851 -9.99042 -9.78942 -9.52146 -8.61255 -6.43705 -0.77492 -0.38541 0.77181 0.91207 1.14269 1.29267 1.30819 1.39377 2.05793 2.10230 2.25919 2.49720 2.85150 3.07514 3.30849 3.88279 4.01215 4.10135 4.14730 4.16395 4.26109 4.35572 4.47150 4.53657 4.61916 4.78381 4.89862 4.96830 4.98301 5.09327 5.20520 5.26038 5.32988 5.45631 5.86943 6.06111 6.76060 7.19077 7.59055 8.45510 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.018763 B = 0.004643 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.947965 B = 6028.990656 C = 6832.038454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.127 4.127 3 C 0.098 3.902 4 N -0.471 5.471 5 C -0.360 4.360 6 H 0.104 0.896 7 C 0.059 3.941 8 N -0.865 5.865 9 Si 0.919 3.081 10 H -0.250 1.250 11 H -0.275 1.275 12 H -0.273 1.273 13 C 0.543 3.457 14 O -0.610 6.610 15 C -0.288 4.288 16 C -0.024 4.024 17 C -0.689 4.689 18 S 2.525 3.475 19 C -0.622 4.622 20 O -0.973 6.973 21 O -0.982 6.982 22 C -0.204 4.204 23 S 0.368 5.632 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.289 0.711 32 H 0.151 0.849 33 H 0.155 0.845 34 H 0.159 0.841 35 H 0.146 0.854 36 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.603 3.031 -5.512 8.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.166 4.166 3 C -0.024 4.024 4 N -0.190 5.190 5 C -0.492 4.492 6 H 0.121 0.879 7 C -0.152 4.152 8 N -0.498 5.498 9 Si 0.744 3.256 10 H -0.175 1.175 11 H -0.201 1.201 12 H -0.198 1.198 13 C 0.334 3.666 14 O -0.498 6.498 15 C -0.409 4.409 16 C -0.056 4.056 17 C -0.787 4.787 18 S 2.706 3.294 19 C -0.776 4.776 20 O -0.970 6.970 21 O -0.979 6.979 22 C -0.344 4.344 23 S 0.642 5.358 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.168 0.832 33 H 0.173 0.827 34 H 0.177 0.823 35 H 0.165 0.835 36 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 5.392 2.577 -4.462 7.458 hybrid contribution -0.720 0.796 -1.043 1.497 sum 4.672 3.373 -5.506 7.970 Atomic orbital electron populations 1.21672 0.93025 1.02914 1.02236 1.21725 0.97728 0.95671 1.01444 1.21840 0.80911 0.98572 1.01080 1.43669 1.05218 1.64800 1.05335 1.18944 1.17987 1.17374 0.94927 0.87945 1.25859 0.97398 0.97496 0.94414 1.69680 1.41775 1.34076 1.04271 0.86201 0.80574 0.79626 0.79166 1.17546 1.20082 1.19794 1.17585 0.85986 0.79364 0.83619 1.90650 1.70026 1.57319 1.31759 1.24806 0.97759 1.18266 1.00113 1.20241 0.90705 0.95471 0.99143 1.29252 1.11431 1.24632 1.13372 1.04395 0.72796 0.78918 0.73263 1.30005 1.13972 1.19135 1.14536 1.93506 1.53096 1.77653 1.72747 1.93512 1.74875 1.69684 1.59843 1.26907 1.10682 0.97767 0.99062 1.85052 0.88928 1.56955 1.04891 0.90819 0.92031 0.92252 0.93364 0.92044 0.91021 0.91789 0.90058 0.83174 0.82700 0.82309 0.83534 0.78252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 9.91 71.98 0.71 -3.23 16 2 C -0.13 -4.66 6.22 30.59 0.19 -4.47 16 3 C 0.10 4.12 3.85 86.38 0.33 4.45 16 4 N -0.47 -22.03 2.05 -640.29 -1.31 -23.34 16 5 C -0.36 -17.13 7.43 84.09 0.62 -16.50 16 6 H 0.10 5.04 5.42 -17.07 -0.09 4.95 16 7 C 0.06 2.76 5.40 84.94 0.46 3.22 16 8 N -0.86 -41.70 13.96 21.67 0.30 -41.40 16 9 Si 0.92 38.02 24.86 68.60 1.71 39.73 16 10 H -0.25 -9.61 6.75 99.48 0.67 -8.94 16 11 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 12 H -0.27 -12.00 7.09 99.48 0.71 -11.29 16 13 C 0.54 26.24 7.56 86.38 0.65 26.89 16 14 O -0.61 -31.59 16.50 -4.50 -0.07 -31.67 16 15 C -0.29 -12.35 6.30 24.07 0.15 -12.20 16 16 C -0.02 -0.90 9.48 21.74 0.21 -0.69 16 17 C -0.69 -21.39 5.55 21.09 0.12 -21.27 16 18 S 2.53 61.57 5.85 -56.49 -0.33 61.23 16 19 C -0.62 -7.67 10.80 113.37 1.22 -6.44 16 20 O -0.97 -28.31 17.46 -127.65 -2.23 -30.54 16 21 O -0.98 -31.64 17.47 -127.65 -2.23 -33.87 16 22 C -0.20 -6.15 10.34 66.82 0.69 -5.46 16 23 S 0.37 13.70 18.33 -56.49 -1.04 12.66 16 24 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.07 2.93 4.02 -2.38 -0.01 2.92 16 30 H 0.06 2.71 7.54 -2.39 -0.02 2.70 16 31 H 0.29 12.92 8.31 -92.70 -0.77 12.15 16 32 H 0.15 5.65 7.93 -2.91 -0.02 5.63 16 33 H 0.15 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.16 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.15 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.20 4.63 7.93 -2.91 -0.02 4.60 16 Total: -1.00 -68.58 326.54 1.15 -67.42 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.99 Total: 15.47 kcal Atomic # 6 Polarization: -41.07 SS G_CDS: 5.36 Total: -35.70 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: -1.01 Total: -64.74 kcal Atomic # 8 Polarization: -91.54 SS G_CDS: -4.53 Total: -96.07 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 1.71 Total: 39.73 kcal Atomic # 16 Polarization: 75.26 SS G_CDS: -1.37 Total: 73.90 kcal Total: -68.58 1.15 -67.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161824105.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.070 kcal (2) G-P(sol) polarization free energy of solvation -68.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds