Wall clock time and date at job start Tue Mar 31 2020 11:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21287 * 119.99681 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00198 * 180.02562 * 13 12 2 16 16 H 1.09001 * 109.46698 * 55.00116 * 15 13 12 17 17 O 1.42899 * 109.47365 * 174.99894 * 15 13 12 18 18 C 1.50695 * 109.47245 * 295.00458 * 15 13 12 19 19 C 1.38219 * 119.98643 * 279.72212 * 18 15 13 20 20 C 1.38363 * 120.01463 * 179.72408 * 19 18 15 21 21 Cl 1.73598 * 120.00845 * 180.27421 * 20 19 18 22 22 C 1.38331 * 119.98475 * 0.57358 * 20 19 18 23 23 C 1.38331 * 119.97497 * 359.70082 * 22 20 19 24 24 Cl 1.73602 * 120.01020 * 180.02562 * 23 22 20 25 25 C 1.38222 * 119.98980 * 99.99737 * 18 15 13 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 30 30 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 31 31 H 0.96701 * 113.99566 * 60.00119 * 17 15 13 32 32 H 1.08002 * 119.99120 * 0.02562 * 19 18 15 33 33 H 1.08005 * 120.01389 * 179.72361 * 22 20 19 34 34 H 1.08005 * 119.99377 * 359.97438 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8589 1.1587 -2.4114 15 6 2.6488 -0.7286 -3.5878 16 1 2.0274 -1.6029 -3.7813 17 8 2.5871 0.1570 -4.7076 18 6 4.0749 -1.1643 -3.3700 19 6 5.1057 -0.2561 -3.5225 20 6 6.4148 -0.6541 -3.3170 21 17 7.7087 0.4884 -3.5017 22 6 6.6928 -1.9641 -2.9705 23 6 5.6613 -2.8740 -2.8235 24 17 6.0091 -4.5181 -2.3880 25 6 4.3521 -2.4733 -3.0232 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 0.7096 1.1617 3.4844 30 1 2.2491 -1.6316 -1.1527 31 1 3.1178 0.9588 -4.6046 32 1 4.8888 0.7656 -3.7974 33 1 7.7149 -2.2763 -2.8144 34 1 3.5466 -3.1835 -2.9081 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162271084.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:10 Heat of formation + Delta-G solvation = -102.620869 kcal Electronic energy + Delta-G solvation = -21801.480329 eV Core-core repulsion = 18170.887666 eV Total energy + Delta-G solvation = -3630.592663 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.53770 -40.10943 -37.93878 -37.81094 -37.15251 -36.50096 -34.44131 -32.90141 -31.75686 -30.93578 -28.03296 -27.31781 -23.98979 -23.85661 -22.67395 -21.29051 -19.57111 -19.04198 -17.86082 -17.58831 -17.18378 -16.96268 -16.52360 -16.01489 -15.84380 -15.47089 -15.10542 -14.87824 -14.61456 -14.38273 -13.86884 -13.43665 -13.38718 -13.19884 -13.00090 -12.89531 -12.81470 -12.74422 -12.48959 -12.28412 -12.22259 -12.12049 -12.00655 -11.80634 -11.10122 -10.74215 -10.59126 -9.95054 -9.84486 -9.79126 -8.17930 -6.34773 -0.17091 -0.14517 0.72011 1.17618 1.43472 1.45408 1.56372 1.61963 2.16197 2.33866 2.53490 3.13047 3.23833 3.31342 3.80021 3.83126 3.86880 3.92333 4.04933 4.27561 4.42568 4.75118 4.85302 4.92048 4.93503 5.06479 5.09133 5.32512 5.41930 5.58115 5.66628 5.87277 6.09333 6.37763 6.72479 6.86907 7.29969 7.45484 8.88427 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.010718 B = 0.004558 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.687970 B = 6142.137978 C = 7013.285813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.271 3.729 3 H -0.001 1.001 4 C -0.542 4.542 5 H 0.074 0.926 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.966 3.034 9 H -0.259 1.259 10 H -0.286 1.286 11 H -0.279 1.279 12 N -0.694 5.694 13 C 0.475 3.525 14 O -0.587 6.587 15 C 0.150 3.850 16 H 0.164 0.836 17 O -0.535 6.535 18 C -0.094 4.094 19 C -0.101 4.101 20 C -0.027 4.027 21 Cl -0.053 7.053 22 C -0.098 4.098 23 C -0.024 4.024 24 Cl -0.047 7.047 25 C -0.088 4.088 26 H 0.066 0.934 27 H 0.043 0.957 28 H 0.012 0.988 29 H 0.265 0.735 30 H 0.405 0.595 31 H 0.389 0.611 32 H 0.142 0.858 33 H 0.160 0.840 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.488 -9.800 -12.973 19.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.167 3.833 3 H 0.017 0.983 4 C -0.580 4.580 5 H 0.092 0.908 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.791 3.209 9 H -0.183 1.183 10 H -0.212 1.212 11 H -0.204 1.204 12 N -0.343 5.343 13 C 0.260 3.740 14 O -0.469 6.469 15 C 0.087 3.913 16 H 0.181 0.819 17 O -0.342 6.342 18 C -0.096 4.096 19 C -0.120 4.120 20 C -0.054 4.054 21 Cl -0.024 7.024 22 C -0.118 4.118 23 C -0.051 4.051 24 Cl -0.018 7.018 25 C -0.107 4.107 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.240 0.760 31 H 0.240 0.760 32 H 0.160 0.840 33 H 0.178 0.822 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 10.960 -9.353 -13.082 19.461 hybrid contribution 0.699 0.188 1.315 1.501 sum 11.660 -9.165 -11.767 18.932 Atomic orbital electron populations 1.21909 0.98189 0.99667 0.99620 1.18363 0.91153 0.91921 0.81835 0.98308 1.21529 1.32359 1.13451 0.90638 0.90836 1.25741 0.94895 0.95543 1.02197 1.70050 1.37060 1.23914 1.24501 0.85377 0.78145 0.78627 0.78718 1.18283 1.21168 1.20433 1.46256 1.64244 1.14288 1.09519 1.21890 0.78251 0.87669 0.86172 1.90676 1.52884 1.17928 1.85368 1.20727 0.92624 0.93968 0.83932 0.81898 1.86580 1.73977 1.35773 1.37838 1.20046 0.94716 0.93947 1.00868 1.21032 0.90783 1.00914 0.99249 1.20679 0.89482 0.91175 1.04029 1.98392 1.48505 1.59604 1.95900 1.21132 1.00853 0.90525 0.99252 1.20719 0.94094 0.87302 1.03021 1.98401 1.95259 1.16902 1.91193 1.21227 0.96343 0.95604 0.97516 0.91556 0.93800 0.96860 0.92593 0.75956 0.76043 0.84035 0.82191 0.81408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.64 9.26 71.98 0.67 -5.97 16 2 C 0.27 13.50 2.56 44.24 0.11 13.61 16 3 H 0.00 -0.06 7.58 -2.39 -0.02 -0.08 16 4 C -0.54 -27.67 8.73 25.60 0.22 -27.45 16 5 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 6 C 0.02 0.86 5.30 84.66 0.45 1.31 16 7 N -0.92 -51.69 11.32 21.45 0.24 -51.45 16 8 Si 0.97 41.22 29.54 68.60 2.03 43.25 16 9 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 10 H -0.29 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 12 N -0.69 -26.63 5.02 -446.09 -2.24 -28.87 16 13 C 0.47 17.33 7.11 87.66 0.62 17.95 16 14 O -0.59 -27.05 15.99 15.94 0.25 -26.79 16 15 C 0.15 3.77 3.62 29.10 0.11 3.88 16 16 H 0.16 3.09 8.00 -2.39 -0.02 3.08 16 17 O -0.54 -13.97 12.84 -129.99 -1.67 -15.64 16 18 C -0.09 -2.11 4.92 -19.87 -0.10 -2.20 16 19 C -0.10 -2.31 9.10 22.29 0.20 -2.11 16 20 C -0.03 -0.57 6.32 22.32 0.14 -0.43 16 21 Cl -0.05 -1.08 28.96 -2.72 -0.08 -1.16 16 22 C -0.10 -1.92 9.62 22.31 0.21 -1.70 16 23 C -0.02 -0.47 6.32 22.32 0.14 -0.33 16 24 Cl -0.05 -0.83 28.96 -2.72 -0.08 -0.91 16 25 C -0.09 -1.70 9.45 22.30 0.21 -1.48 16 26 H 0.07 3.60 6.07 -2.39 -0.01 3.59 16 27 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.26 14.15 8.31 -92.71 -0.77 13.37 16 30 H 0.41 12.80 8.54 -92.71 -0.79 12.01 16 31 H 0.39 8.97 7.24 -74.06 -0.54 8.44 16 32 H 0.14 3.08 6.77 -2.91 -0.02 3.06 16 33 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 34 H 0.17 2.37 8.04 -2.91 -0.02 2.35 16 Total: -1.00 -65.67 328.89 1.29 -64.38 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -0.16 Total: 22.13 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 2.99 Total: -4.93 kcal Atomic # 7 Polarization: -78.32 SS G_CDS: -2.00 Total: -80.32 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -1.41 Total: -42.43 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 17 Polarization: -1.92 SS G_CDS: -0.16 Total: -2.08 kcal Total: -65.67 1.29 -64.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162271084.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.242 kcal (2) G-P(sol) polarization free energy of solvation -65.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds