Wall clock time and date at job start Tue Mar 31 2020 12:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48507 * 109.46789 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46944 * 299.99287 * 3 2 1 6 6 H 1.48499 * 109.47315 * 59.99843 * 3 2 1 7 7 C 1.38815 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99657 * 193.76656 * 7 2 1 9 9 N 1.36931 * 119.99712 * 13.48875 * 7 2 1 10 10 C 1.46962 * 120.59542 * 31.70414 * 9 7 2 11 11 C 1.53814 * 108.39949 * 124.75936 * 10 9 7 12 12 N 1.46962 * 108.58100 * 49.63554 * 11 10 9 13 13 C 1.34774 * 120.59263 * 124.62983 * 12 11 10 14 14 O 1.21717 * 119.99844 * 185.60121 * 13 12 11 15 15 C 1.46543 * 120.00100 * 5.59556 * 13 12 11 16 16 C 1.37955 * 126.22353 * 221.44959 * 15 13 12 17 17 C 1.39796 * 107.12654 * 179.84923 * 16 15 13 18 18 Cl 1.73598 * 126.06197 * 180.15895 * 17 16 15 19 19 C 1.35720 * 107.87683 * 0.42328 * 17 16 15 20 20 Cl 1.73596 * 125.58790 * 179.71603 * 19 17 16 21 21 N 1.35666 * 108.82937 * 359.73847 * 19 17 16 22 22 H 0.97000 * 125.69710 * 179.97438 * 21 19 17 23 23 C 1.46965 * 118.81192 * 304.65220 * 12 11 10 24 24 C 1.46968 * 120.59349 * 211.98524 * 9 7 2 25 25 H 0.97001 * 119.99945 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.61052 * 244.53658 * 10 9 7 27 27 H 1.09004 * 109.61119 * 5.04800 * 10 9 7 28 28 H 1.09004 * 109.73682 * 289.84343 * 11 10 9 29 29 H 1.08996 * 109.53118 * 169.30598 * 11 10 9 30 30 H 1.08003 * 126.43838 * 359.97292 * 16 15 13 31 31 H 1.09002 * 109.60693 * 295.47780 * 23 12 11 32 32 H 1.09000 * 109.60970 * 174.97030 * 23 12 11 33 33 H 1.08997 * 109.60936 * 354.94079 * 24 9 7 34 34 H 1.08994 * 109.61576 * 115.45957 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3963 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0670 -1.2154 0.2231 9 7 1.3540 -2.3718 -0.2756 10 6 0.2105 -2.3879 -1.1986 11 6 0.4965 -3.4144 -2.3079 12 7 0.9191 -4.6750 -1.6817 13 6 0.2726 -5.8261 -1.9528 14 8 0.5646 -6.8440 -1.3527 15 6 -0.7819 -5.8521 -2.9700 16 6 -1.9853 -6.5206 -2.8798 17 6 -2.6839 -6.2725 -4.0650 18 17 -4.2611 -6.8762 -4.4671 19 6 -1.9081 -5.4807 -4.8480 20 17 -2.3293 -4.8994 -6.4286 21 7 -0.7492 -5.2183 -4.1933 22 1 -0.0192 -4.6756 -4.5301 23 6 2.0591 -4.6579 -0.7542 24 6 1.7766 -3.6324 0.3507 25 1 -0.4850 0.8401 -0.0004 26 1 -0.6923 -2.6719 -0.6578 27 1 0.0810 -1.3988 -1.6379 28 1 1.2903 -3.0439 -2.9565 29 1 -0.4084 -3.5814 -2.8920 30 1 -2.3249 -7.1210 -2.0487 31 1 2.9642 -4.3760 -1.2923 32 1 2.1860 -5.6462 -0.3123 33 1 2.6816 -3.4654 0.9347 34 1 0.9828 -4.0029 0.9993 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174353402.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:15 Heat of formation + Delta-G solvation = 34.895078 kcal Electronic energy + Delta-G solvation = -22080.163822 eV Core-core repulsion = 18487.827049 eV Total energy + Delta-G solvation = -3592.336773 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.71817 -39.30701 -37.05263 -36.88672 -36.59159 -34.05129 -31.75371 -31.23319 -30.40359 -29.25587 -27.00134 -24.17034 -23.18631 -22.37215 -21.08907 -20.63114 -19.75128 -18.15513 -16.90613 -16.15687 -15.78885 -15.51215 -14.91249 -14.76870 -14.57980 -14.04228 -13.78206 -13.63842 -13.50490 -13.40345 -13.22890 -12.54392 -12.11630 -12.06509 -11.69458 -11.61857 -11.42211 -11.04993 -10.95991 -10.88507 -10.60459 -10.37804 -10.20857 -10.00511 -9.81434 -9.16956 -8.72612 -8.53404 -8.32575 -6.78930 -5.95576 -3.45059 1.15797 1.31132 1.94735 2.11815 2.90694 2.96734 3.26483 3.35175 3.36800 3.46584 4.35125 4.52410 4.74113 5.07346 5.20496 5.24101 5.49639 5.58086 5.66058 5.76026 5.86913 6.01454 6.06332 6.17282 6.22874 6.30457 6.65790 6.74644 6.80641 7.03979 7.31223 7.58882 7.65837 8.20716 8.27641 9.02091 9.62932 10.21381 11.12246 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.017151 B = 0.003716 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.138537 B = 7533.082896 C = 8412.658274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.008 3.992 3 Si 0.905 3.095 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.260 4.260 8 H 0.068 0.932 9 N -0.590 5.590 10 C 0.162 3.838 11 C 0.069 3.931 12 N -0.589 5.589 13 C 0.581 3.419 14 O -0.534 6.534 15 C 0.007 3.993 16 C -0.104 4.104 17 C -0.093 4.093 18 Cl -0.033 7.033 19 C 0.089 3.911 20 Cl 0.000 7.000 21 N -0.519 5.519 22 H 0.430 0.570 23 C 0.096 3.904 24 C 0.130 3.870 25 H 0.256 0.744 26 H 0.028 0.972 27 H 0.100 0.900 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.164 0.836 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.738 -10.209 -11.174 15.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.192 4.192 3 Si 0.735 3.265 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.390 4.390 8 H 0.086 0.914 9 N -0.313 5.313 10 C 0.036 3.964 11 C -0.055 4.055 12 N -0.320 5.320 13 C 0.368 3.632 14 O -0.411 6.411 15 C -0.108 4.108 16 C -0.130 4.130 17 C -0.128 4.128 18 Cl -0.004 7.004 19 C -0.055 4.055 20 Cl 0.028 6.972 21 N -0.121 5.121 22 H 0.271 0.729 23 C -0.028 4.028 24 C 0.003 3.997 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.118 0.882 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.182 0.818 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -3.680 -10.474 -11.030 15.649 hybrid contribution 0.428 1.357 -0.471 1.499 sum -3.252 -9.117 -11.501 15.032 Atomic orbital electron populations 1.69982 1.05359 1.25795 1.53379 1.25195 0.95359 0.98655 0.99970 0.86187 0.79368 0.83572 0.77412 1.20119 1.21446 1.21506 1.19230 0.91642 0.83951 1.44156 0.91435 1.43972 1.35659 1.03285 1.48389 1.21205 0.89528 0.97092 0.88617 1.22986 0.98862 0.85147 0.98531 1.48066 1.31933 1.07256 1.44769 1.16957 0.80393 0.83843 0.82055 1.90834 1.64997 1.33292 1.51966 1.20430 0.99299 1.03287 0.87772 1.21043 0.91895 1.02196 0.97888 1.19531 0.90691 1.06091 0.96486 1.98339 1.21951 1.86580 1.93540 1.20503 0.89594 1.05443 0.89936 1.98417 1.91510 1.87634 1.19628 1.42152 1.15353 1.40440 1.14161 0.72883 1.22319 0.86861 1.01444 0.92146 1.21328 0.98843 0.86983 0.92532 0.93379 0.95437 0.88233 0.91507 0.91268 0.81823 0.91510 0.89568 0.91233 0.95564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.70 11.21 55.49 0.62 -24.07 16 2 C 0.01 0.20 4.98 -17.43 -0.09 0.11 16 3 Si 0.91 20.46 29.58 -169.99 -5.03 15.43 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.26 -6.65 9.56 -15.06 -0.14 -6.80 16 8 H 0.07 1.70 7.87 -52.49 -0.41 1.28 16 9 N -0.59 -13.71 2.95 -171.77 -0.51 -14.22 16 10 C 0.16 3.52 5.50 -3.37 -0.02 3.50 16 11 C 0.07 1.14 5.84 -3.37 -0.02 1.12 16 12 N -0.59 -9.83 2.95 -173.80 -0.51 -10.35 16 13 C 0.58 9.65 7.58 -12.91 -0.10 9.55 16 14 O -0.53 -10.20 16.50 5.17 0.09 -10.11 16 15 C 0.01 0.09 5.82 -81.93 -0.48 -0.38 16 16 C -0.10 -1.40 10.83 -39.10 -0.42 -1.82 16 17 C -0.09 -1.16 6.66 -39.90 -0.27 -1.43 16 18 Cl -0.03 -0.37 29.12 -51.86 -1.51 -1.88 16 19 C 0.09 1.04 7.75 -16.76 -0.13 0.91 16 20 Cl 0.00 0.00 29.13 -51.86 -1.51 -1.51 16 21 N -0.52 -6.07 4.68 -6.51 -0.03 -6.10 16 22 H 0.43 4.19 8.00 -40.82 -0.33 3.87 16 23 C 0.10 1.62 6.60 -3.60 -0.02 1.60 16 24 C 0.13 2.58 6.67 -3.59 -0.02 2.55 16 25 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.10 2.39 6.14 -51.93 -0.32 2.07 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.00 5.07 -51.93 -0.26 0.74 16 30 H 0.16 2.04 8.06 -52.48 -0.42 1.62 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.09 1.41 6.99 -51.93 -0.36 1.05 16 33 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 34 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 316.15 15.07 4.76 4.76 Total: -1.00 -28.91 316.15 -8.68 -37.59 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -3.34 Total: 1.55 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -1.71 Total: 8.91 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.43 Total: -54.73 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.03 Total: 15.43 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -3.02 Total: -3.39 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.91 -8.68 -37.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174353402.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.485 kcal (2) G-P(sol) polarization free energy of solvation -28.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds