Wall clock time and date at job start Tue Mar 31 2020 12:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48507 * 109.46789 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46944 * 299.99287 * 3 2 1 6 6 H 1.48499 * 109.47315 * 59.99843 * 3 2 1 7 7 C 1.38815 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99657 * 193.76656 * 7 2 1 9 9 N 1.36931 * 119.99712 * 13.48875 * 7 2 1 10 10 C 1.46962 * 120.59542 * 31.70414 * 9 7 2 11 11 C 1.53814 * 108.39949 * 124.75936 * 10 9 7 12 12 N 1.46962 * 108.58100 * 49.63554 * 11 10 9 13 13 C 1.34774 * 120.59263 * 124.62983 * 12 11 10 14 14 O 1.21717 * 119.99844 * 185.60121 * 13 12 11 15 15 C 1.46543 * 120.00100 * 5.59556 * 13 12 11 16 16 C 1.37955 * 126.22353 * 221.44959 * 15 13 12 17 17 C 1.39796 * 107.12654 * 179.84923 * 16 15 13 18 18 Cl 1.73598 * 126.06197 * 180.15895 * 17 16 15 19 19 C 1.35720 * 107.87683 * 0.42328 * 17 16 15 20 20 Cl 1.73596 * 125.58790 * 179.71603 * 19 17 16 21 21 N 1.35666 * 108.82937 * 359.73847 * 19 17 16 22 22 H 0.97000 * 125.69710 * 179.97438 * 21 19 17 23 23 C 1.46965 * 118.81192 * 304.65220 * 12 11 10 24 24 C 1.46968 * 120.59349 * 211.98524 * 9 7 2 25 25 H 0.97001 * 119.99945 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.61052 * 244.53658 * 10 9 7 27 27 H 1.09004 * 109.61119 * 5.04800 * 10 9 7 28 28 H 1.09004 * 109.73682 * 289.84343 * 11 10 9 29 29 H 1.08996 * 109.53118 * 169.30598 * 11 10 9 30 30 H 1.08003 * 126.43838 * 359.97292 * 16 15 13 31 31 H 1.09002 * 109.60693 * 295.47780 * 23 12 11 32 32 H 1.09000 * 109.60970 * 174.97030 * 23 12 11 33 33 H 1.08997 * 109.60936 * 354.94079 * 24 9 7 34 34 H 1.08994 * 109.61576 * 115.45957 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3963 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0670 -1.2154 0.2231 9 7 1.3540 -2.3718 -0.2756 10 6 0.2105 -2.3879 -1.1986 11 6 0.4965 -3.4144 -2.3079 12 7 0.9191 -4.6750 -1.6817 13 6 0.2726 -5.8261 -1.9528 14 8 0.5646 -6.8440 -1.3527 15 6 -0.7819 -5.8521 -2.9700 16 6 -1.9853 -6.5206 -2.8798 17 6 -2.6839 -6.2725 -4.0650 18 17 -4.2611 -6.8762 -4.4671 19 6 -1.9081 -5.4807 -4.8480 20 17 -2.3293 -4.8994 -6.4286 21 7 -0.7492 -5.2183 -4.1933 22 1 -0.0192 -4.6756 -4.5301 23 6 2.0591 -4.6579 -0.7542 24 6 1.7766 -3.6324 0.3507 25 1 -0.4850 0.8401 -0.0004 26 1 -0.6923 -2.6719 -0.6578 27 1 0.0810 -1.3988 -1.6379 28 1 1.2903 -3.0439 -2.9565 29 1 -0.4084 -3.5814 -2.8920 30 1 -2.3249 -7.1210 -2.0487 31 1 2.9642 -4.3760 -1.2923 32 1 2.1860 -5.6462 -0.3123 33 1 2.6816 -3.4654 0.9347 34 1 0.9828 -4.0029 0.9993 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174353402.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:14 Heat of formation + Delta-G solvation = 18.134132 kcal Electronic energy + Delta-G solvation = -22080.890632 eV Core-core repulsion = 18487.827049 eV Total energy + Delta-G solvation = -3593.063583 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.77016 -40.64095 -38.49280 -37.89595 -37.51747 -35.70816 -33.38619 -32.36322 -31.96861 -30.44869 -28.61290 -25.79772 -24.70336 -23.74911 -22.16948 -21.82852 -21.09514 -19.60944 -18.32781 -17.70195 -17.05700 -16.80420 -16.57919 -15.82490 -15.74544 -15.50080 -15.34048 -15.13948 -15.02167 -14.66602 -14.42837 -13.97700 -13.40027 -13.26301 -12.97888 -12.85095 -12.72246 -12.53356 -12.48393 -12.23381 -12.08701 -11.98664 -11.95796 -11.70475 -11.25125 -10.63639 -10.17930 -9.97533 -9.37132 -8.65257 -7.90642 -5.43520 0.10879 0.34789 0.99383 1.09441 1.47429 1.50931 1.60105 1.66871 1.82595 2.32110 2.50555 3.26100 3.34437 3.54359 3.75334 4.06345 4.16055 4.19783 4.33165 4.44762 4.47688 4.57368 4.69629 4.77094 5.01084 5.06564 5.17995 5.23506 5.44602 5.54609 5.63500 5.86279 6.25297 6.35758 6.88248 7.09663 7.75434 8.30483 9.14739 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.017151 B = 0.003716 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.138537 B = 7533.082896 C = 8412.658274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.042 4.042 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.296 1.296 7 C -0.266 4.266 8 H 0.071 0.929 9 N -0.607 5.607 10 C 0.168 3.832 11 C 0.089 3.911 12 N -0.592 5.592 13 C 0.587 3.413 14 O -0.561 6.561 15 C -0.013 4.013 16 C -0.104 4.104 17 C -0.105 4.105 18 Cl -0.023 7.023 19 C 0.100 3.900 20 Cl 0.019 6.981 21 N -0.509 5.509 22 H 0.440 0.560 23 C 0.106 3.894 24 C 0.129 3.871 25 H 0.252 0.748 26 H -0.004 1.004 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.168 0.832 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.172 -10.501 -12.773 16.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.238 4.238 3 Si 0.796 3.204 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.223 1.223 7 C -0.396 4.396 8 H 0.089 0.911 9 N -0.331 5.331 10 C 0.041 3.959 11 C -0.035 4.035 12 N -0.323 5.323 13 C 0.375 3.625 14 O -0.440 6.440 15 C -0.127 4.127 16 C -0.130 4.130 17 C -0.140 4.140 18 Cl 0.005 6.995 19 C -0.045 4.045 20 Cl 0.048 6.952 21 N -0.112 5.112 22 H 0.283 0.717 23 C -0.017 4.017 24 C 0.003 3.997 25 H 0.061 0.939 26 H 0.015 0.985 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.185 0.815 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -3.091 -10.782 -12.645 16.903 hybrid contribution 0.182 1.396 0.022 1.408 sum -2.909 -9.386 -12.623 15.997 Atomic orbital electron populations 1.70135 1.06739 1.26074 1.55018 1.25888 0.95996 1.01543 1.00347 0.85207 0.78717 0.79748 0.76726 1.18938 1.21430 1.22330 1.19550 0.92000 0.84936 1.43110 0.91114 1.44228 1.35727 1.03788 1.49307 1.21004 0.88131 0.97328 0.89440 1.22710 1.00535 0.83590 0.96657 1.48082 1.32000 1.07394 1.44842 1.17146 0.80174 0.83169 0.81996 1.90816 1.65844 1.34126 1.53201 1.20019 0.99109 1.05208 0.88409 1.21206 0.91802 1.01662 0.98359 1.19594 0.91344 1.06613 0.96412 1.98343 1.21202 1.86493 1.93414 1.20631 0.89110 1.04345 0.90402 1.98433 1.91325 1.87304 1.18148 1.42054 1.15673 1.40072 1.13354 0.71720 1.22162 0.87517 1.00613 0.91425 1.21406 0.98426 0.86410 0.93450 0.93889 0.98541 0.90730 0.89696 0.89133 0.81455 0.89931 0.88865 0.90471 0.97340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.17 11.21 21.65 0.24 -51.93 16 2 C -0.04 -2.17 4.98 84.86 0.42 -1.75 16 3 Si 0.97 42.06 29.58 68.60 2.03 44.09 16 4 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.30 -13.15 7.11 99.48 0.71 -12.45 16 7 C -0.27 -13.55 9.56 84.04 0.80 -12.74 16 8 H 0.07 3.49 7.87 -2.91 -0.02 3.47 16 9 N -0.61 -28.24 2.95 -697.35 -2.05 -30.29 16 10 C 0.17 7.32 5.50 86.57 0.48 7.80 16 11 C 0.09 2.81 5.84 86.57 0.51 3.32 16 12 N -0.59 -18.99 2.95 -822.00 -2.42 -21.42 16 13 C 0.59 18.78 7.58 86.41 0.65 19.44 16 14 O -0.56 -20.95 16.50 -4.40 -0.07 -21.03 16 15 C -0.01 -0.35 5.82 40.30 0.23 -0.11 16 16 C -0.10 -2.66 10.83 22.58 0.24 -2.41 16 17 C -0.10 -2.44 6.66 22.06 0.15 -2.29 16 18 Cl -0.02 -0.48 29.12 -2.72 -0.08 -0.56 16 19 C 0.10 2.12 7.75 83.52 0.65 2.77 16 20 Cl 0.02 0.34 29.13 -2.72 -0.08 0.26 16 21 N -0.51 -10.77 4.68 -174.52 -0.82 -11.59 16 22 H 0.44 7.39 8.00 -92.71 -0.74 6.65 16 23 C 0.11 3.45 6.60 86.42 0.57 4.02 16 24 C 0.13 5.09 6.67 86.41 0.58 5.67 16 25 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 26 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 27 H 0.07 3.64 6.14 -2.38 -0.01 3.63 16 28 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.09 2.47 5.07 -2.39 -0.01 2.46 16 30 H 0.17 4.04 8.06 -2.91 -0.02 4.01 16 31 H 0.08 2.45 8.14 -2.39 -0.02 2.44 16 32 H 0.09 2.93 6.99 -2.39 -0.02 2.92 16 33 H 0.08 2.87 7.93 -2.39 -0.02 2.85 16 34 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -61.68 316.15 2.45 -59.23 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.42 Total: 9.53 kcal Atomic # 6 Polarization: 18.42 SS G_CDS: 5.28 Total: 23.70 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -5.05 Total: -115.23 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.07 Total: -21.03 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.16 Total: -0.30 kcal Total: -61.68 2.45 -59.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174353402.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.362 kcal (2) G-P(sol) polarization free energy of solvation -61.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds