Wall clock time and date at job start Tue Mar 31 2020 11:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46956 * 2 1 4 4 N 1.46502 * 109.47379 * 239.99534 * 2 1 3 5 5 C 1.34781 * 119.99544 * 83.04895 * 4 2 1 6 6 O 1.21281 * 120.00247 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99594 * 179.97438 * 5 4 2 8 8 S 1.80995 * 109.47078 * 180.02562 * 7 5 4 9 9 C 1.76197 * 100.00115 * 180.02562 * 8 7 5 10 10 H 1.08007 * 120.00016 * 359.97438 * 9 8 7 11 11 C 1.38796 * 120.00248 * 180.02562 * 9 8 7 12 12 N 1.31630 * 120.00029 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00248 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47033 * 60.00102 * 13 11 9 15 15 H 1.48503 * 109.47281 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47099 * 300.00234 * 13 11 9 17 17 C 1.50698 * 109.47002 * 119.99618 * 2 1 3 18 18 C 1.38461 * 120.01976 * 73.43469 * 17 2 1 19 19 F 1.35100 * 120.01630 * 359.97438 * 18 17 2 20 20 C 1.38445 * 119.96249 * 179.97438 * 18 17 2 21 21 C 1.38225 * 120.00220 * 0.02562 * 20 18 17 22 22 C 1.38211 * 120.03880 * 359.97438 * 21 20 18 23 23 C 1.38301 * 120.01947 * 253.71389 * 17 2 1 24 24 Cl 1.73593 * 120.00092 * 359.97438 * 23 17 2 25 25 H 1.08995 * 109.47409 * 300.00293 * 1 2 3 26 26 H 1.09004 * 109.47004 * 60.00245 * 1 2 3 27 27 H 1.08999 * 109.46956 * 180.02562 * 1 2 3 28 28 H 0.96997 * 120.00106 * 263.05437 * 4 2 1 29 29 H 1.08993 * 109.47414 * 300.00592 * 7 5 4 30 30 H 1.09009 * 109.46923 * 60.00276 * 7 5 4 31 31 H 0.97004 * 120.00247 * 180.02562 * 12 11 9 32 32 H 1.07995 * 119.99859 * 180.02562 * 20 18 17 33 33 H 1.07995 * 119.98486 * 180.02562 * 21 20 18 34 34 H 1.07994 * 119.98344 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1099 -0.0285 -2.3665 6 8 1.7883 1.1392 -2.4293 7 6 2.6128 -0.7388 -3.5967 8 16 2.6198 0.4094 -4.9958 9 6 3.2321 -0.6534 -6.2608 10 1 3.4739 -1.6810 -6.0326 11 6 3.4049 -0.1697 -7.5502 12 7 3.1108 1.0828 -7.8283 13 14 4.0547 -1.2962 -8.8912 14 1 3.1322 -2.4476 -9.0605 15 1 4.1475 -0.5437 -10.1680 16 1 5.4016 -1.7928 -8.5108 17 6 2.0323 -0.7103 1.2305 18 6 1.9410 -2.0890 1.3203 19 9 1.4010 -2.7981 0.3050 20 6 2.4033 -2.7404 2.4511 21 6 2.9552 -2.0145 3.4898 22 6 3.0465 -0.6383 3.4003 23 6 2.5796 0.0150 2.2732 24 17 2.6886 1.7441 2.1645 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 2.2759 -1.6245 -1.1458 29 1 3.6255 -1.1006 -3.4190 30 1 1.9600 -1.5823 -3.8217 31 1 3.2312 1.4208 -8.7295 32 1 2.3327 -3.8157 2.5216 33 1 3.3161 -2.5229 4.3716 34 1 3.4775 -0.0720 4.2125 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174945231.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:06 Heat of formation + Delta-G solvation = -66.445803 kcal Electronic energy + Delta-G solvation = -21221.829371 eV Core-core repulsion = 17607.221872 eV Total energy + Delta-G solvation = -3614.607499 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.039 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.42325 -40.06795 -38.93483 -36.84323 -35.53674 -32.40763 -32.06427 -30.90416 -29.83758 -28.38870 -25.46818 -24.33412 -23.39504 -21.62461 -20.27651 -18.30207 -17.85770 -17.15548 -16.75649 -16.23124 -15.86997 -15.52273 -15.11305 -14.94793 -14.78220 -14.18361 -14.01800 -13.90262 -13.68814 -13.21635 -12.99241 -12.61315 -12.56650 -12.25987 -11.98247 -11.79552 -11.73738 -11.63558 -11.02186 -11.01950 -10.79992 -10.74324 -9.80844 -9.50272 -9.24779 -9.17918 -9.04243 -8.91726 -8.21526 -6.47273 -6.19236 -3.89625 0.49229 0.54159 1.64559 2.85774 3.08142 3.12369 3.25349 3.29259 3.33342 3.70180 3.77069 4.04363 4.22827 4.33068 4.40107 4.68630 4.88878 5.11828 5.15334 5.16180 5.26015 5.33912 5.47100 5.51626 5.63177 5.69248 5.69980 5.91816 5.95732 6.13067 6.17618 6.23910 6.60873 7.61610 7.70642 8.37428 8.62013 9.25891 10.88140 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.022262 B = 0.003029 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.435751 B = 9241.007170 C = 9841.228758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.179 3.821 3 H 0.110 0.890 4 N -0.734 5.734 5 C 0.535 3.465 6 O -0.514 6.514 7 C -0.153 4.153 8 S -0.058 6.058 9 C -0.536 4.536 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C -0.117 4.117 18 C 0.119 3.881 19 F -0.125 7.125 20 C -0.147 4.147 21 C -0.079 4.079 22 C -0.118 4.118 23 C -0.001 4.001 24 Cl -0.043 7.043 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.398 0.602 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.269 0.731 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.457 -7.451 26.245 27.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.074 3.926 3 H 0.128 0.872 4 N -0.391 5.391 5 C 0.322 3.678 6 O -0.388 6.388 7 C -0.304 4.304 8 S 0.169 5.831 9 C -0.685 4.685 10 H 0.090 0.910 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.199 1.199 17 C -0.119 4.119 18 C 0.099 3.901 19 F -0.103 7.103 20 C -0.166 4.166 21 C -0.098 4.098 22 C -0.137 4.137 23 C -0.029 4.029 24 Cl -0.014 7.014 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.234 0.766 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.018 -5.209 25.928 26.523 hybrid contribution 0.841 -2.592 -0.897 2.869 sum -1.177 -7.801 25.031 26.245 Atomic orbital electron populations 1.22175 0.93711 1.02637 1.03294 1.19824 0.94835 0.97498 0.80458 0.87229 1.46215 1.69156 1.15221 1.08502 1.20312 0.76888 0.87056 0.83584 1.90696 1.47419 1.16102 1.84601 1.23535 1.03708 1.04866 0.98261 1.85369 1.85918 1.14152 0.97664 1.22839 1.50623 0.99100 0.95892 0.90978 1.24984 0.95101 0.95537 0.97921 1.70009 1.45319 1.13886 1.21112 0.86227 0.79343 0.80030 0.79916 1.19932 1.20819 1.19946 1.19923 1.02190 0.92298 0.97520 1.17327 0.98068 0.88314 0.86409 1.91499 1.83308 1.77859 1.57628 1.21286 1.00831 1.01598 0.92861 1.20999 0.97300 0.93025 0.98454 1.21152 1.00561 0.94809 0.97153 1.20579 1.00778 0.86067 0.95447 1.98417 1.96605 1.08510 1.97824 0.91626 0.90525 0.92178 0.76580 0.89240 0.89137 0.92143 0.83807 0.83825 0.83937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.37 37.16 0.35 -1.65 16 2 C 0.18 2.40 2.42 -69.08 -0.17 2.23 16 3 H 0.11 1.65 5.83 -51.93 -0.30 1.35 16 4 N -0.73 -11.06 4.86 -54.93 -0.27 -11.33 16 5 C 0.54 10.45 7.79 -10.98 -0.09 10.37 16 6 O -0.51 -11.85 15.55 5.56 0.09 -11.76 16 7 C -0.15 -3.21 6.16 36.01 0.22 -2.99 16 8 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 9 C -0.54 -15.49 9.50 30.94 0.29 -15.20 16 10 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 11 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 12 N -0.87 -26.42 13.22 55.49 0.73 -25.69 16 13 Si 0.92 21.62 29.55 -169.99 -5.02 16.59 16 14 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 17 C -0.12 -1.27 4.95 -104.52 -0.52 -1.79 16 18 C 0.12 1.14 6.76 -39.42 -0.27 0.88 16 19 F -0.12 -1.32 14.22 2.25 0.03 -1.29 16 20 C -0.15 -1.02 10.03 -39.51 -0.40 -1.42 16 21 C -0.08 -0.45 10.04 -39.60 -0.40 -0.85 16 22 C -0.12 -0.82 9.83 -39.54 -0.39 -1.21 16 23 C 0.00 -0.01 6.31 -39.50 -0.25 -0.26 16 24 Cl -0.04 -0.44 27.06 -51.86 -1.40 -1.85 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.06 0.70 7.46 -51.93 -0.39 0.32 16 28 H 0.40 5.23 6.35 -40.82 -0.26 4.97 16 29 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 30 H 0.09 1.76 8.14 -51.91 -0.42 1.34 16 31 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 33 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 34 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 LS Contribution 327.50 15.07 4.94 4.94 Total: -1.00 -34.08 327.50 -8.27 -42.35 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -3.45 Total: 1.68 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -1.70 Total: -9.84 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.47 Total: -37.02 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.03 Total: -1.29 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.40 Total: -1.85 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.08 -8.27 -42.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174945231.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.099 kcal (2) G-P(sol) polarization free energy of solvation -34.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds