Wall clock time and date at job start Tue Mar 31 2020 11:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46956 * 2 1 4 4 N 1.46502 * 109.47379 * 239.99534 * 2 1 3 5 5 C 1.34781 * 119.99544 * 83.04895 * 4 2 1 6 6 O 1.21281 * 120.00247 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99594 * 179.97438 * 5 4 2 8 8 S 1.80995 * 109.47078 * 180.02562 * 7 5 4 9 9 C 1.76197 * 100.00115 * 180.02562 * 8 7 5 10 10 H 1.08007 * 120.00016 * 359.97438 * 9 8 7 11 11 C 1.38796 * 120.00248 * 180.02562 * 9 8 7 12 12 N 1.31630 * 120.00029 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00248 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47033 * 60.00102 * 13 11 9 15 15 H 1.48503 * 109.47281 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47099 * 300.00234 * 13 11 9 17 17 C 1.50698 * 109.47002 * 119.99618 * 2 1 3 18 18 C 1.38461 * 120.01976 * 73.43469 * 17 2 1 19 19 F 1.35100 * 120.01630 * 359.97438 * 18 17 2 20 20 C 1.38445 * 119.96249 * 179.97438 * 18 17 2 21 21 C 1.38225 * 120.00220 * 0.02562 * 20 18 17 22 22 C 1.38211 * 120.03880 * 359.97438 * 21 20 18 23 23 C 1.38301 * 120.01947 * 253.71389 * 17 2 1 24 24 Cl 1.73593 * 120.00092 * 359.97438 * 23 17 2 25 25 H 1.08995 * 109.47409 * 300.00293 * 1 2 3 26 26 H 1.09004 * 109.47004 * 60.00245 * 1 2 3 27 27 H 1.08999 * 109.46956 * 180.02562 * 1 2 3 28 28 H 0.96997 * 120.00106 * 263.05437 * 4 2 1 29 29 H 1.08993 * 109.47414 * 300.00592 * 7 5 4 30 30 H 1.09009 * 109.46923 * 60.00276 * 7 5 4 31 31 H 0.97004 * 120.00247 * 180.02562 * 12 11 9 32 32 H 1.07995 * 119.99859 * 180.02562 * 20 18 17 33 33 H 1.07995 * 119.98486 * 180.02562 * 21 20 18 34 34 H 1.07994 * 119.98344 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1099 -0.0285 -2.3665 6 8 1.7883 1.1392 -2.4293 7 6 2.6128 -0.7388 -3.5967 8 16 2.6198 0.4094 -4.9958 9 6 3.2321 -0.6534 -6.2608 10 1 3.4739 -1.6810 -6.0326 11 6 3.4049 -0.1697 -7.5502 12 7 3.1108 1.0828 -7.8283 13 14 4.0547 -1.2962 -8.8912 14 1 3.1322 -2.4476 -9.0605 15 1 4.1475 -0.5437 -10.1680 16 1 5.4016 -1.7928 -8.5108 17 6 2.0323 -0.7103 1.2305 18 6 1.9410 -2.0890 1.3203 19 9 1.4010 -2.7981 0.3050 20 6 2.4033 -2.7404 2.4511 21 6 2.9552 -2.0145 3.4898 22 6 3.0465 -0.6383 3.4003 23 6 2.5796 0.0150 2.2732 24 17 2.6886 1.7441 2.1645 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 2.2759 -1.6245 -1.1458 29 1 3.6255 -1.1006 -3.4190 30 1 1.9600 -1.5823 -3.8217 31 1 3.2312 1.4208 -8.7295 32 1 2.3327 -3.8157 2.5216 33 1 3.3161 -2.5229 4.3716 34 1 3.4775 -0.0720 4.2125 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174945231.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:06 Heat of formation + Delta-G solvation = -88.049914 kcal Electronic energy + Delta-G solvation = -21222.766195 eV Core-core repulsion = 17607.221872 eV Total energy + Delta-G solvation = -3615.544324 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.039 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.16212 -41.10461 -40.07124 -37.56128 -36.72881 -34.59515 -33.28315 -31.52287 -30.89835 -29.76268 -27.67152 -25.21042 -24.04753 -22.57849 -21.64842 -19.93266 -18.90612 -18.24291 -17.86902 -17.23400 -16.88709 -16.80659 -16.48794 -16.39873 -15.88270 -15.76318 -15.05380 -14.94349 -14.64383 -14.50513 -14.41465 -14.01702 -13.57055 -13.27099 -13.18068 -12.93375 -12.90416 -12.85740 -12.61899 -12.44642 -12.41130 -11.77092 -11.64892 -11.13711 -11.04346 -10.33540 -10.30768 -9.96073 -9.80309 -8.68361 -8.35279 -6.13961 -0.13819 -0.07121 0.94971 1.24255 1.43700 1.44892 1.53642 1.55299 2.13675 2.26622 2.41301 2.98652 3.09647 3.20974 3.29779 3.69431 3.82128 3.87583 4.11713 4.18013 4.22211 4.26401 4.37053 4.45286 4.57000 4.71881 4.78976 4.95847 5.05845 5.10809 5.17831 5.34559 5.40572 5.64963 6.18732 6.35958 7.05555 7.13116 8.73784 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.022262 B = 0.003029 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.435751 B = 9241.007170 C = 9841.228758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.176 3.824 3 H 0.090 0.910 4 N -0.713 5.713 5 C 0.537 3.463 6 O -0.557 6.557 7 C -0.130 4.130 8 S -0.144 6.144 9 C -0.550 4.550 10 H 0.082 0.918 11 C 0.014 3.986 12 N -0.911 5.911 13 Si 0.999 3.001 14 H -0.262 1.262 15 H -0.278 1.278 16 H -0.262 1.262 17 C -0.136 4.136 18 C 0.102 3.898 19 F -0.135 7.135 20 C -0.139 4.139 21 C -0.062 4.062 22 C -0.113 4.113 23 C -0.015 4.015 24 Cl -0.061 7.061 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.410 0.590 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.272 0.728 32 H 0.170 0.830 33 H 0.185 0.815 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.467 -10.501 28.338 30.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.072 3.928 3 H 0.108 0.892 4 N -0.369 5.369 5 C 0.324 3.676 6 O -0.434 6.434 7 C -0.281 4.281 8 S 0.083 5.917 9 C -0.698 4.698 10 H 0.100 0.900 11 C -0.191 4.191 12 N -0.547 5.547 13 Si 0.821 3.179 14 H -0.186 1.186 15 H -0.203 1.203 16 H -0.186 1.186 17 C -0.138 4.138 18 C 0.082 3.918 19 F -0.114 7.114 20 C -0.157 4.157 21 C -0.080 4.080 22 C -0.131 4.131 23 C -0.042 4.042 24 Cl -0.032 7.032 25 H 0.102 0.898 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.248 0.752 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.081 0.919 32 H 0.187 0.813 33 H 0.202 0.798 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.030 -8.297 28.069 29.287 hybrid contribution 0.527 -1.699 -1.336 2.225 sum -0.503 -9.996 26.733 28.545 Atomic orbital electron populations 1.22104 0.93264 1.02993 1.02820 1.19857 0.95275 0.96831 0.80845 0.89220 1.46017 1.67532 1.15548 1.07782 1.20070 0.76730 0.86470 0.84375 1.90684 1.49591 1.17853 1.85287 1.23372 1.05405 1.03375 0.95991 1.85537 1.86351 1.18247 1.01521 1.23185 1.50753 0.99435 0.96382 0.89955 1.26137 0.95020 0.97226 1.00688 1.70176 1.46539 1.16151 1.21871 0.84994 0.79085 0.77742 0.76106 1.18633 1.20289 1.18623 1.19677 1.04404 0.92965 0.96782 1.17554 0.99078 0.87840 0.87283 1.91466 1.83673 1.77924 1.58308 1.21652 0.99352 1.02988 0.91744 1.21498 0.95151 0.92319 0.99045 1.21514 0.99362 0.95697 0.96534 1.20753 1.01840 0.85255 0.96348 1.98412 1.96743 1.10097 1.97914 0.89828 0.93236 0.91300 0.75208 0.87384 0.87319 0.91932 0.81253 0.79780 0.81651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 9.37 71.98 0.67 -3.24 16 2 C 0.18 4.78 2.42 44.25 0.11 4.89 16 3 H 0.09 2.82 5.83 -2.39 -0.01 2.81 16 4 N -0.71 -21.48 4.86 -446.08 -2.17 -23.65 16 5 C 0.54 21.44 7.79 87.66 0.68 22.13 16 6 O -0.56 -26.87 15.55 -3.03 -0.05 -26.92 16 7 C -0.13 -5.48 6.16 71.24 0.44 -5.04 16 8 S -0.14 -8.19 20.57 -56.49 -1.16 -9.35 16 9 C -0.55 -32.03 9.50 67.95 0.65 -31.39 16 10 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 11 C 0.01 0.82 5.49 84.86 0.47 1.28 16 12 N -0.91 -56.69 13.22 21.65 0.29 -56.40 16 13 Si 1.00 44.11 29.55 68.60 2.03 46.14 16 14 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 15 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 16 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 17 C -0.14 -2.80 4.95 -19.80 -0.10 -2.90 16 18 C 0.10 1.75 6.76 22.37 0.15 1.90 16 19 F -0.14 -2.65 14.22 44.97 0.64 -2.01 16 20 C -0.14 -1.39 10.03 22.32 0.22 -1.17 16 21 C -0.06 -0.41 10.04 22.26 0.22 -0.19 16 22 C -0.11 -1.18 9.83 22.30 0.22 -0.96 16 23 C -0.01 -0.26 6.31 22.32 0.14 -0.12 16 24 Cl -0.06 -1.26 27.06 -2.72 -0.07 -1.33 16 25 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.07 1.60 7.46 -2.39 -0.02 1.58 16 28 H 0.41 10.41 6.35 -92.71 -0.59 9.82 16 29 H 0.11 4.13 8.14 -2.40 -0.02 4.11 16 30 H 0.11 4.16 8.14 -2.39 -0.02 4.14 16 31 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 32 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 33 H 0.18 -0.20 8.06 -2.91 -0.02 -0.23 16 34 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -77.37 327.50 3.94 -73.43 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.56 Total: 14.89 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: 3.88 Total: -14.80 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -1.88 Total: -80.05 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.05 Total: -26.92 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.64 Total: -2.01 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: -8.19 SS G_CDS: -1.16 Total: -9.35 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.07 Total: -1.33 kcal Total: -77.37 3.94 -73.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174945231.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.619 kcal (2) G-P(sol) polarization free energy of solvation -77.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds