Wall clock time and date at job start Tue Mar 31 2020 11:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35665 * 117.00120 * 2 1 4 4 C 1.38642 * 120.13228 * 0.23200 * 3 2 1 5 5 C 1.38197 * 120.08371 * 180.29795 * 4 3 2 6 6 Cl 1.73601 * 119.82112 * 179.72108 * 5 4 3 7 7 C 1.38786 * 120.35401 * 359.69974 * 5 4 3 8 8 Cl 1.73607 * 119.87100 * 180.02562 * 7 5 4 9 9 C 1.37825 * 120.26613 * 0.04440 * 7 5 4 10 10 C 1.39756 * 119.89936 * 359.97438 * 9 7 5 11 11 C 1.47481 * 120.17152 * 179.97438 * 10 9 7 12 12 O 1.21593 * 120.00335 * 152.80450 * 11 10 9 13 13 N 1.34784 * 119.99638 * 332.52515 * 11 10 9 14 14 C 1.46502 * 120.00083 * 356.86049 * 13 11 10 15 15 C 1.46500 * 119.99842 * 176.85772 * 13 11 10 16 16 C 1.50699 * 109.47140 * 90.00032 * 15 13 11 17 17 H 1.07991 * 120.00049 * 0.02562 * 16 15 13 18 18 C 1.37876 * 119.99453 * 179.97438 * 16 15 13 19 19 N 1.31515 * 119.99498 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00499 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47135 * 89.99547 * 20 18 16 22 22 H 1.48499 * 109.47099 * 209.99473 * 20 18 16 23 23 H 1.48501 * 109.46986 * 329.99587 * 20 18 16 24 24 H 1.09003 * 109.47146 * 299.99820 * 1 2 3 25 25 H 1.09001 * 109.47258 * 59.99695 * 1 2 3 26 26 H 1.09002 * 109.47297 * 180.02562 * 1 2 3 27 27 H 1.07997 * 119.95522 * 0.02562 * 4 3 2 28 28 H 1.07997 * 120.05018 * 179.97438 * 9 7 5 29 29 H 1.08994 * 109.47351 * 96.04372 * 14 13 11 30 30 H 1.09000 * 109.46991 * 216.05143 * 14 13 11 31 31 H 1.09008 * 109.46770 * 336.04835 * 14 13 11 32 32 H 1.08997 * 109.46893 * 210.00367 * 15 13 11 33 33 H 1.09005 * 109.47116 * 329.99671 * 15 13 11 34 34 H 0.97004 * 120.00046 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2925 2.3733 0.0049 5 6 1.9210 3.6041 -0.0014 6 17 0.9722 5.0579 -0.0026 7 6 3.3065 3.6841 -0.0062 8 17 4.0829 5.2369 -0.0133 9 6 4.0687 2.5357 -0.0058 10 6 3.4444 1.2853 0.0001 11 6 4.2541 0.0527 0.0000 12 8 3.8071 -0.9685 0.4858 13 7 5.4875 0.0566 -0.5437 14 6 5.9968 1.2657 -1.1955 15 6 6.3187 -1.1482 -0.4827 16 6 6.0597 -1.9993 -1.6991 17 1 5.3476 -1.6750 -2.4433 18 6 6.7328 -3.1915 -1.8622 19 7 6.5071 -3.9340 -2.9240 20 14 7.9651 -3.7521 -0.5752 21 1 7.2711 -4.5706 0.4513 22 1 9.0235 -4.5663 -1.2248 23 1 8.5804 -2.5651 0.0712 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.2140 2.3184 0.0091 28 1 5.1466 2.6021 -0.0100 29 1 6.6070 1.8293 -0.4898 30 1 6.6026 0.9861 -2.0574 31 1 5.1595 1.8814 -1.5243 32 1 7.3703 -0.8630 -0.4559 33 1 6.0728 -1.7142 0.4159 34 1 6.9804 -4.7729 -3.0386 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176166267.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:46 Heat of formation + Delta-G solvation = -54.420401 kcal Electronic energy + Delta-G solvation = -21985.373633 eV Core-core repulsion = 18356.871099 eV Total energy + Delta-G solvation = -3628.502534 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.94512 -40.17923 -39.05515 -37.67296 -37.23840 -36.68549 -34.76213 -32.76933 -31.30052 -30.23453 -28.27103 -27.77740 -25.53081 -23.91520 -23.37131 -20.96503 -19.20588 -19.11365 -18.43050 -18.02092 -17.16702 -16.95002 -16.79294 -16.29937 -15.95391 -15.62617 -15.28572 -14.90928 -14.85862 -14.42334 -14.07660 -13.99217 -13.70888 -13.40593 -13.00629 -12.97510 -12.92490 -12.65222 -12.46583 -12.42298 -12.17124 -12.02153 -11.97896 -11.73756 -11.56410 -10.82066 -10.80139 -10.16339 -9.54473 -9.30505 -8.32231 -6.37681 -0.57850 -0.11502 0.65094 1.01164 1.34834 1.39432 1.47619 1.63248 2.10733 2.16020 2.33011 2.49431 3.02180 3.33472 3.47186 3.66774 3.93848 4.11011 4.20879 4.33271 4.35982 4.40636 4.52624 4.56079 4.61551 4.72171 4.81298 4.90959 4.95021 5.09409 5.45596 5.56436 6.16243 6.24663 6.58681 6.63586 7.20264 7.34257 8.85045 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.019029 B = 0.003958 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.062734 B = 7073.223138 C = 8141.044347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.314 6.314 3 C 0.189 3.811 4 C -0.191 4.191 5 C 0.032 3.968 6 Cl -0.026 7.026 7 C -0.083 4.083 8 Cl -0.033 7.033 9 C -0.031 4.031 10 C -0.171 4.171 11 C 0.545 3.455 12 O -0.569 6.569 13 N -0.599 5.599 14 C 0.060 3.940 15 C 0.225 3.775 16 C -0.536 4.536 17 H 0.025 0.975 18 C 0.011 3.989 19 N -0.947 5.947 20 Si 0.949 3.051 21 H -0.277 1.277 22 H -0.275 1.275 23 H -0.234 1.234 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.111 0.889 27 H 0.181 0.819 28 H 0.184 0.816 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.022 0.978 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.603 21.391 7.430 24.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.225 6.225 3 C 0.140 3.860 4 C -0.211 4.211 5 C 0.004 3.996 6 Cl 0.004 6.996 7 C -0.111 4.111 8 Cl -0.004 7.004 9 C -0.050 4.050 10 C -0.175 4.175 11 C 0.334 3.666 12 O -0.449 6.449 13 N -0.330 5.330 14 C -0.081 4.081 15 C 0.103 3.897 16 C -0.575 4.575 17 H 0.043 0.957 18 C -0.187 4.187 19 N -0.587 5.587 20 Si 0.772 3.228 21 H -0.202 1.202 22 H -0.200 1.200 23 H -0.156 1.156 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.129 0.871 27 H 0.198 0.802 28 H 0.201 0.799 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.077 0.923 33 H 0.040 0.960 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.702 20.773 7.576 24.146 hybrid contribution 0.085 -0.659 -0.079 0.669 sum -9.617 20.114 7.497 23.521 Atomic orbital electron populations 1.23585 0.75623 1.06035 1.03389 1.86394 1.24190 1.25739 1.86207 1.19084 0.90678 0.85426 0.90856 1.21161 1.02289 0.88309 1.09297 1.20727 0.90098 0.89145 0.99619 1.98407 1.71065 1.33987 1.96181 1.20434 0.90841 0.88569 1.11212 1.98388 1.80270 1.24740 1.97013 1.21785 1.02610 0.87581 0.92999 1.19370 0.91518 0.93677 1.12939 1.18368 0.81486 0.87797 0.78917 1.90755 1.70785 1.34942 1.48410 1.47811 1.15282 1.14619 1.55302 1.22574 1.00720 0.86183 0.98660 1.19406 0.91213 0.83450 0.95627 1.21534 1.23883 1.05762 1.06324 0.95684 1.25871 0.99086 0.95943 0.97804 1.70060 1.44272 1.14146 1.30204 0.85697 0.78511 0.79893 0.78741 1.20235 1.20038 1.15642 0.89928 0.90271 0.87114 0.80155 0.79870 0.88719 0.91059 0.89225 0.92302 0.96010 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.31 -10.37 8.93 -70.93 -0.63 -11.00 16 3 C 0.19 5.60 6.67 22.83 0.15 5.75 16 4 C -0.19 -4.02 8.80 22.36 0.20 -3.82 16 5 C 0.03 0.65 6.32 22.39 0.14 0.80 16 6 Cl -0.03 -0.43 27.93 -2.72 -0.08 -0.51 16 7 C -0.08 -1.76 6.31 22.30 0.14 -1.61 16 8 Cl -0.03 -0.60 27.93 -2.72 -0.08 -0.68 16 9 C -0.03 -0.75 7.25 22.54 0.16 -0.59 16 10 C -0.17 -5.57 5.47 -20.01 -0.11 -5.68 16 11 C 0.55 23.68 7.38 86.68 0.64 24.32 16 12 O -0.57 -30.20 15.27 14.87 0.23 -29.97 16 13 N -0.60 -24.96 2.86 -854.97 -2.44 -27.40 16 14 C 0.06 1.74 8.73 127.77 1.12 2.85 16 15 C 0.22 11.01 4.23 85.63 0.36 11.37 16 16 C -0.54 -32.03 9.94 25.60 0.25 -31.78 16 17 H 0.02 1.69 8.06 -2.92 -0.02 1.66 16 18 C 0.01 0.64 5.47 84.65 0.46 1.10 16 19 N -0.95 -60.45 13.96 21.45 0.30 -60.15 16 20 Si 0.95 44.37 27.47 68.60 1.88 46.26 16 21 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.23 -9.63 6.54 99.48 0.65 -8.98 16 24 H 0.08 1.16 7.65 -2.39 -0.02 1.14 16 25 H 0.08 1.16 7.67 -2.39 -0.02 1.15 16 26 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.18 2.61 6.30 -2.91 -0.02 2.59 16 28 H 0.18 3.76 4.65 -2.91 -0.01 3.74 16 29 H 0.09 1.97 7.21 -2.39 -0.02 1.95 16 30 H 0.07 2.18 8.12 -2.39 -0.02 2.16 16 31 H 0.09 2.27 5.05 -2.38 -0.01 2.26 16 32 H 0.06 2.57 7.13 -2.39 -0.02 2.55 16 33 H 0.02 1.14 6.90 -2.38 -0.02 1.12 16 34 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -79.95 316.65 4.92 -75.03 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: 1.10 Total: 4.46 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 4.63 Total: 3.96 kcal Atomic # 7 Polarization: -85.41 SS G_CDS: -2.14 Total: -87.56 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -0.41 Total: -40.97 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.88 Total: 46.26 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.15 Total: -1.18 kcal Total: -79.95 4.92 -75.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176166267.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.613 kcal (2) G-P(sol) polarization free energy of solvation -79.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds