Wall clock time and date at job start Tue Mar 31 2020 11:54:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.35665 * 117.00120 * 2 1
4 4 C 1.38642 * 120.13228 * 0.23200 * 3 2 1
5 5 C 1.38197 * 120.08371 * 180.29795 * 4 3 2
6 6 Cl 1.73601 * 119.82112 * 179.72108 * 5 4 3
7 7 C 1.38786 * 120.35401 * 359.69974 * 5 4 3
8 8 Cl 1.73607 * 119.87100 * 180.02562 * 7 5 4
9 9 C 1.37825 * 120.26613 * 0.04440 * 7 5 4
10 10 C 1.39756 * 119.89936 * 359.97438 * 9 7 5
11 11 C 1.47481 * 120.17152 * 179.97438 * 10 9 7
12 12 O 1.21593 * 120.00335 * 152.80450 * 11 10 9
13 13 N 1.34784 * 119.99638 * 332.52515 * 11 10 9
14 14 C 1.46502 * 120.00083 * 356.86049 * 13 11 10
15 15 C 1.46500 * 119.99842 * 176.85772 * 13 11 10
16 16 C 1.50699 * 109.47140 * 90.00032 * 15 13 11
17 17 H 1.07991 * 120.00049 * 0.02562 * 16 15 13
18 18 C 1.37876 * 119.99453 * 179.97438 * 16 15 13
19 19 N 1.31515 * 119.99498 * 180.02562 * 18 16 15
20 20 Si 1.86800 * 120.00499 * 0.02562 * 18 16 15
21 21 H 1.48500 * 109.47135 * 89.99547 * 20 18 16
22 22 H 1.48499 * 109.47099 * 209.99473 * 20 18 16
23 23 H 1.48501 * 109.46986 * 329.99587 * 20 18 16
24 24 H 1.09003 * 109.47146 * 299.99820 * 1 2 3
25 25 H 1.09001 * 109.47258 * 59.99695 * 1 2 3
26 26 H 1.09002 * 109.47297 * 180.02562 * 1 2 3
27 27 H 1.07997 * 119.95522 * 0.02562 * 4 3 2
28 28 H 1.07997 * 120.05018 * 179.97438 * 9 7 5
29 29 H 1.08994 * 109.47351 * 96.04372 * 14 13 11
30 30 H 1.09000 * 109.46991 * 216.05143 * 14 13 11
31 31 H 1.09008 * 109.46770 * 336.04835 * 14 13 11
32 32 H 1.08997 * 109.46893 * 210.00367 * 15 13 11
33 33 H 1.09005 * 109.47116 * 329.99671 * 15 13 11
34 34 H 0.97004 * 120.00046 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0449 1.2088 0.0000
4 6 1.2925 2.3733 0.0049
5 6 1.9210 3.6041 -0.0014
6 17 0.9722 5.0579 -0.0026
7 6 3.3065 3.6841 -0.0062
8 17 4.0829 5.2369 -0.0133
9 6 4.0687 2.5357 -0.0058
10 6 3.4444 1.2853 0.0001
11 6 4.2541 0.0527 0.0000
12 8 3.8071 -0.9685 0.4858
13 7 5.4875 0.0566 -0.5437
14 6 5.9968 1.2657 -1.1955
15 6 6.3187 -1.1482 -0.4827
16 6 6.0597 -1.9993 -1.6991
17 1 5.3476 -1.6750 -2.4433
18 6 6.7328 -3.1915 -1.8622
19 7 6.5071 -3.9340 -2.9240
20 14 7.9651 -3.7521 -0.5752
21 1 7.2711 -4.5706 0.4513
22 1 9.0235 -4.5663 -1.2248
23 1 8.5804 -2.5651 0.0712
24 1 -0.3633 0.5138 0.8900
25 1 -0.3634 0.5139 -0.8900
26 1 -0.3634 -1.0277 0.0005
27 1 0.2140 2.3184 0.0091
28 1 5.1466 2.6021 -0.0100
29 1 6.6070 1.8293 -0.4898
30 1 6.6026 0.9861 -2.0574
31 1 5.1595 1.8814 -1.5243
32 1 7.3703 -0.8630 -0.4559
33 1 6.0728 -1.7142 0.4159
34 1 6.9804 -4.7729 -3.0386
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000176166267.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:54:46
Heat of formation + Delta-G solvation = -54.420401 kcal
Electronic energy + Delta-G solvation = -21985.373633 eV
Core-core repulsion = 18356.871099 eV
Total energy + Delta-G solvation = -3628.502534 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 317.037 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-41.94512 -40.17923 -39.05515 -37.67296 -37.23840 -36.68549 -34.76213 -32.76933
-31.30052 -30.23453 -28.27103 -27.77740 -25.53081 -23.91520 -23.37131 -20.96503
-19.20588 -19.11365 -18.43050 -18.02092 -17.16702 -16.95002 -16.79294 -16.29937
-15.95391 -15.62617 -15.28572 -14.90928 -14.85862 -14.42334 -14.07660 -13.99217
-13.70888 -13.40593 -13.00629 -12.97510 -12.92490 -12.65222 -12.46583 -12.42298
-12.17124 -12.02153 -11.97896 -11.73756 -11.56410 -10.82066 -10.80139 -10.16339
-9.54473 -9.30505 -8.32231 -6.37681 -0.57850 -0.11502 0.65094 1.01164
1.34834 1.39432 1.47619 1.63248 2.10733 2.16020 2.33011 2.49431
3.02180 3.33472 3.47186 3.66774 3.93848 4.11011 4.20879 4.33271
4.35982 4.40636 4.52624 4.56079 4.61551 4.72171 4.81298 4.90959
4.95021 5.09409 5.45596 5.56436 6.16243 6.24663 6.58681 6.63586
7.20264 7.34257 8.85045
Molecular weight = 317.04amu
Principal moments of inertia in cm(-1)
A = 0.019029 B = 0.003958 C = 0.003439
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1471.062734 B = 7073.223138 C = 8141.044347
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.007 3.993
2 O -0.314 6.314
3 C 0.189 3.811
4 C -0.191 4.191
5 C 0.032 3.968
6 Cl -0.026 7.026
7 C -0.083 4.083
8 Cl -0.033 7.033
9 C -0.031 4.031
10 C -0.171 4.171
11 C 0.545 3.455
12 O -0.569 6.569
13 N -0.599 5.599
14 C 0.060 3.940
15 C 0.225 3.775
16 C -0.536 4.536
17 H 0.025 0.975
18 C 0.011 3.989
19 N -0.947 5.947
20 Si 0.949 3.051
21 H -0.277 1.277
22 H -0.275 1.275
23 H -0.234 1.234
24 H 0.082 0.918
25 H 0.079 0.921
26 H 0.111 0.889
27 H 0.181 0.819
28 H 0.184 0.816
29 H 0.095 0.905
30 H 0.071 0.929
31 H 0.090 0.910
32 H 0.059 0.941
33 H 0.022 0.978
34 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.603 21.391 7.430 24.597
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.086 4.086
2 O -0.225 6.225
3 C 0.140 3.860
4 C -0.211 4.211
5 C 0.004 3.996
6 Cl 0.004 6.996
7 C -0.111 4.111
8 Cl -0.004 7.004
9 C -0.050 4.050
10 C -0.175 4.175
11 C 0.334 3.666
12 O -0.449 6.449
13 N -0.330 5.330
14 C -0.081 4.081
15 C 0.103 3.897
16 C -0.575 4.575
17 H 0.043 0.957
18 C -0.187 4.187
19 N -0.587 5.587
20 Si 0.772 3.228
21 H -0.202 1.202
22 H -0.200 1.200
23 H -0.156 1.156
24 H 0.101 0.899
25 H 0.097 0.903
26 H 0.129 0.871
27 H 0.198 0.802
28 H 0.201 0.799
29 H 0.113 0.887
30 H 0.089 0.911
31 H 0.108 0.892
32 H 0.077 0.923
33 H 0.040 0.960
34 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -9.702 20.773 7.576 24.146
hybrid contribution 0.085 -0.659 -0.079 0.669
sum -9.617 20.114 7.497 23.521
Atomic orbital electron populations
1.23585 0.75623 1.06035 1.03389 1.86394 1.24190 1.25739 1.86207
1.19084 0.90678 0.85426 0.90856 1.21161 1.02289 0.88309 1.09297
1.20727 0.90098 0.89145 0.99619 1.98407 1.71065 1.33987 1.96181
1.20434 0.90841 0.88569 1.11212 1.98388 1.80270 1.24740 1.97013
1.21785 1.02610 0.87581 0.92999 1.19370 0.91518 0.93677 1.12939
1.18368 0.81486 0.87797 0.78917 1.90755 1.70785 1.34942 1.48410
1.47811 1.15282 1.14619 1.55302 1.22574 1.00720 0.86183 0.98660
1.19406 0.91213 0.83450 0.95627 1.21534 1.23883 1.05762 1.06324
0.95684 1.25871 0.99086 0.95943 0.97804 1.70060 1.44272 1.14146
1.30204 0.85697 0.78511 0.79893 0.78741 1.20235 1.20038 1.15642
0.89928 0.90271 0.87114 0.80155 0.79870 0.88719 0.91059 0.89225
0.92302 0.96010 0.92274
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.14 9.81 113.37 1.11 1.25 16
2 O -0.31 -10.37 8.93 -70.93 -0.63 -11.00 16
3 C 0.19 5.60 6.67 22.83 0.15 5.75 16
4 C -0.19 -4.02 8.80 22.36 0.20 -3.82 16
5 C 0.03 0.65 6.32 22.39 0.14 0.80 16
6 Cl -0.03 -0.43 27.93 -2.72 -0.08 -0.51 16
7 C -0.08 -1.76 6.31 22.30 0.14 -1.61 16
8 Cl -0.03 -0.60 27.93 -2.72 -0.08 -0.68 16
9 C -0.03 -0.75 7.25 22.54 0.16 -0.59 16
10 C -0.17 -5.57 5.47 -20.01 -0.11 -5.68 16
11 C 0.55 23.68 7.38 86.68 0.64 24.32 16
12 O -0.57 -30.20 15.27 14.87 0.23 -29.97 16
13 N -0.60 -24.96 2.86 -854.97 -2.44 -27.40 16
14 C 0.06 1.74 8.73 127.77 1.12 2.85 16
15 C 0.22 11.01 4.23 85.63 0.36 11.37 16
16 C -0.54 -32.03 9.94 25.60 0.25 -31.78 16
17 H 0.02 1.69 8.06 -2.92 -0.02 1.66 16
18 C 0.01 0.64 5.47 84.65 0.46 1.10 16
19 N -0.95 -60.45 13.96 21.45 0.30 -60.15 16
20 Si 0.95 44.37 27.47 68.60 1.88 46.26 16
21 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16
22 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16
23 H -0.23 -9.63 6.54 99.48 0.65 -8.98 16
24 H 0.08 1.16 7.65 -2.39 -0.02 1.14 16
25 H 0.08 1.16 7.67 -2.39 -0.02 1.15 16
26 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16
27 H 0.18 2.61 6.30 -2.91 -0.02 2.59 16
28 H 0.18 3.76 4.65 -2.91 -0.01 3.74 16
29 H 0.09 1.97 7.21 -2.39 -0.02 1.95 16
30 H 0.07 2.18 8.12 -2.39 -0.02 2.16 16
31 H 0.09 2.27 5.05 -2.38 -0.01 2.26 16
32 H 0.06 2.57 7.13 -2.39 -0.02 2.55 16
33 H 0.02 1.14 6.90 -2.38 -0.02 1.12 16
34 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16
Total: -1.00 -79.95 316.65 4.92 -75.03
By element:
Atomic # 1 Polarization: 3.36 SS G_CDS: 1.10 Total: 4.46 kcal
Atomic # 6 Polarization: -0.67 SS G_CDS: 4.63 Total: 3.96 kcal
Atomic # 7 Polarization: -85.41 SS G_CDS: -2.14 Total: -87.56 kcal
Atomic # 8 Polarization: -40.57 SS G_CDS: -0.41 Total: -40.97 kcal
Atomic # 14 Polarization: 44.37 SS G_CDS: 1.88 Total: 46.26 kcal
Atomic # 17 Polarization: -1.03 SS G_CDS: -0.15 Total: -1.18 kcal
Total: -79.95 4.92 -75.03 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000176166267.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.613 kcal
(2) G-P(sol) polarization free energy of solvation -79.950 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.337 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.916 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.033 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.420 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds