Wall clock time and date at job start Tue Mar 31 2020 11:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35675 * 116.99788 * 2 1 4 4 C 1.38635 * 120.13168 * 0.28409 * 3 2 1 5 5 C 1.38208 * 120.08478 * 180.27166 * 4 3 2 6 6 Cl 1.73595 * 119.82276 * 179.71867 * 5 4 3 7 7 C 1.38793 * 120.35143 * 359.69939 * 5 4 3 8 8 Cl 1.73594 * 119.86888 * 179.97438 * 7 5 4 9 9 C 1.37830 * 120.25949 * 0.02562 * 7 5 4 10 10 C 1.39758 * 119.90933 * 359.97438 * 9 7 5 11 11 C 1.47476 * 120.17307 * 179.97438 * 10 9 7 12 12 O 1.21590 * 120.00102 * 180.02562 * 11 10 9 13 13 N 1.34775 * 119.99719 * 0.02562 * 11 10 9 14 14 C 1.46506 * 119.99693 * 179.97438 * 13 11 10 15 15 H 1.08996 * 109.46660 * 35.00912 * 14 13 11 16 16 C 1.52997 * 109.47289 * 275.00198 * 14 13 11 17 17 C 1.50699 * 109.46928 * 155.00268 * 14 13 11 18 18 H 1.08003 * 119.99962 * 0.02562 * 17 14 13 19 19 C 1.37874 * 120.00270 * 180.02562 * 17 14 13 20 20 N 1.31516 * 119.99500 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 120.00390 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.46755 * 90.00226 * 21 19 17 23 23 H 1.48498 * 109.46866 * 210.00212 * 21 19 17 24 24 H 1.48496 * 109.47178 * 330.00276 * 21 19 17 25 25 H 1.08999 * 109.47249 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46857 * 299.99699 * 1 2 3 27 27 H 1.09005 * 109.47274 * 59.99509 * 1 2 3 28 28 H 1.08002 * 119.95821 * 0.02562 * 4 3 2 29 29 H 1.08000 * 120.04450 * 179.97438 * 9 7 5 30 30 H 0.97000 * 120.00190 * 0.02562 * 13 11 10 31 31 H 1.09002 * 109.47153 * 179.97438 * 16 14 13 32 32 H 1.09001 * 109.46832 * 60.00146 * 16 14 13 33 33 H 1.09004 * 109.47261 * 300.00128 * 16 14 13 34 34 H 0.97002 * 119.99804 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2925 2.3733 0.0059 5 6 1.9209 3.6042 0.0003 6 17 0.9720 5.0579 0.0004 7 6 3.3065 3.6843 -0.0051 8 17 4.0827 5.2370 -0.0129 9 6 4.0685 2.5359 -0.0054 10 6 3.4444 1.2854 0.0003 11 6 4.2542 0.0528 -0.0005 12 8 3.7080 -1.0335 0.0040 13 7 5.5997 0.1305 -0.0062 14 6 6.4041 -1.0939 -0.0065 15 1 5.8976 -1.8611 -0.5920 16 6 6.5850 -1.5856 1.4310 17 6 7.7537 -0.8082 -0.6132 18 1 7.9888 0.1861 -0.9631 19 6 8.6882 -1.8160 -0.7215 20 7 8.4016 -3.0269 -0.2958 21 14 10.3608 -1.4621 -1.4742 22 1 11.3043 -1.0405 -0.4077 23 1 10.8760 -2.6883 -2.1345 24 1 10.2318 -0.3760 -2.4786 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 0.2139 2.3184 0.0110 29 1 5.1465 2.6022 -0.0100 30 1 6.0355 0.9971 -0.0095 31 1 7.1831 -2.4969 1.4307 32 1 5.6088 -1.7923 1.8698 33 1 7.0915 -0.8183 2.0165 34 1 9.0593 -3.7360 -0.3716 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176271757.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:02 Heat of formation + Delta-G solvation = -61.742399 kcal Electronic energy + Delta-G solvation = -21638.250890 eV Core-core repulsion = 18009.430850 eV Total energy + Delta-G solvation = -3628.820040 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.66997 -38.54896 -38.02590 -36.77015 -36.22824 -34.78675 -32.55770 -31.39730 -30.25004 -28.77610 -27.36797 -25.26109 -24.15525 -22.61136 -21.22917 -19.58196 -18.77308 -17.53213 -16.92529 -16.23749 -15.98829 -15.51153 -15.17389 -14.96673 -14.39336 -14.31481 -14.03072 -13.76388 -13.33320 -12.85356 -12.55981 -12.24256 -12.11167 -12.05760 -11.70411 -11.61241 -11.38671 -11.10407 -11.09462 -10.94989 -10.76514 -10.66727 -10.32200 -10.23310 -9.25614 -9.14182 -9.04086 -8.55793 -8.38608 -7.90779 -6.12270 -4.21615 0.46548 0.87585 1.55966 1.96810 2.84885 3.06543 3.25121 3.32069 3.34211 3.89525 3.95302 4.27049 4.35669 4.61993 4.85978 4.90099 4.98658 5.11916 5.20223 5.24691 5.32428 5.46226 5.65682 5.78863 6.09571 6.82977 6.96906 7.10634 7.15149 7.42719 7.55269 7.68801 7.91113 8.14418 8.61751 8.77060 9.07032 9.45770 10.93747 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.016135 B = 0.003770 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.912156 B = 7424.803976 C = 8894.252583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.265 6.265 3 C 0.198 3.802 4 C -0.205 4.205 5 C 0.026 3.974 6 Cl -0.046 7.046 7 C -0.079 4.079 8 Cl -0.049 7.049 9 C -0.029 4.029 10 C -0.141 4.141 11 C 0.545 3.455 12 O -0.525 6.525 13 N -0.703 5.703 14 C 0.266 3.734 15 H 0.051 0.949 16 C -0.147 4.147 17 C -0.534 4.534 18 H 0.062 0.938 19 C 0.067 3.933 20 N -0.883 5.883 21 Si 0.901 3.099 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 H 0.106 0.894 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.152 0.848 29 H 0.156 0.844 30 H 0.386 0.614 31 H 0.091 0.909 32 H 0.015 0.985 33 H 0.027 0.973 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.976 14.218 1.321 20.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.175 6.175 3 C 0.148 3.852 4 C -0.225 4.225 5 C -0.002 4.002 6 Cl -0.017 7.017 7 C -0.106 4.106 8 Cl -0.020 7.020 9 C -0.048 4.048 10 C -0.145 4.145 11 C 0.329 3.671 12 O -0.403 6.403 13 N -0.352 5.352 14 C 0.164 3.836 15 H 0.069 0.931 16 C -0.206 4.206 17 C -0.573 4.573 18 H 0.080 0.920 19 C -0.136 4.136 20 N -0.520 5.520 21 Si 0.729 3.271 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.198 1.198 25 H 0.125 0.875 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.169 0.831 29 H 0.173 0.827 30 H 0.220 0.780 31 H 0.109 0.891 32 H 0.034 0.966 33 H 0.046 0.954 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.193 13.255 1.332 20.207 hybrid contribution 0.848 1.091 -0.364 1.429 sum -14.345 14.346 0.968 20.311 Atomic orbital electron populations 1.23256 0.78588 1.04800 1.01225 1.86507 1.20811 1.24212 1.85945 1.18933 0.90936 0.84646 0.90647 1.20996 1.01111 0.89607 1.10765 1.20559 0.89860 0.88458 1.01335 1.98392 1.71581 1.35307 1.96437 1.20408 0.90626 0.88286 1.11310 1.98382 1.80485 1.26044 1.97080 1.21136 1.00822 0.88714 0.94160 1.19878 0.91151 0.94769 1.08726 1.17720 0.83045 0.87518 0.78787 1.90801 1.71632 1.28047 1.49838 1.46498 1.04802 1.11827 1.72047 1.18785 0.89232 0.81457 0.94100 0.93112 1.22084 0.98579 1.02668 0.97268 1.21206 0.98115 0.96666 1.41297 0.92026 1.24876 0.98760 0.94832 0.95153 1.69904 1.35128 1.01176 1.45822 0.86448 0.83500 0.77862 0.79306 1.20534 1.21075 1.19816 0.87528 0.92420 0.92407 0.83081 0.82699 0.78026 0.89073 0.96550 0.95414 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.26 -4.01 8.56 -40.63 -0.35 -4.36 16 3 C 0.20 2.85 6.70 -38.71 -0.26 2.59 16 4 C -0.21 -2.32 8.80 -39.45 -0.35 -2.66 16 5 C 0.03 0.30 6.32 -39.39 -0.25 0.05 16 6 Cl -0.05 -0.47 27.93 -51.86 -1.45 -1.91 16 7 C -0.08 -0.96 6.31 -39.53 -0.25 -1.21 16 8 Cl -0.05 -0.55 27.93 -51.86 -1.45 -2.00 16 9 C -0.03 -0.38 9.31 -39.16 -0.36 -0.75 16 10 C -0.14 -2.25 5.89 -104.84 -0.62 -2.87 16 11 C 0.55 11.15 7.73 -12.50 -0.10 11.06 16 12 O -0.53 -12.69 14.82 -16.61 -0.25 -12.94 16 13 N -0.70 -14.63 5.02 -56.00 -0.28 -14.91 16 14 C 0.27 6.71 2.56 -69.08 -0.18 6.54 16 15 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 16 C -0.15 -3.65 9.26 37.16 0.34 -3.31 16 17 C -0.53 -14.01 8.73 -34.44 -0.30 -14.31 16 18 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 19 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 20 N -0.88 -24.68 11.32 55.43 0.63 -24.05 16 21 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.42 7.65 -51.93 -0.40 0.02 16 27 H 0.06 0.42 7.67 -51.93 -0.40 0.03 16 28 H 0.15 1.28 6.30 -52.49 -0.33 0.95 16 29 H 0.16 1.85 6.40 -52.49 -0.34 1.51 16 30 H 0.39 6.86 6.57 -40.82 -0.27 6.59 16 31 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 321.87 15.07 4.85 4.85 Total: -1.00 -30.86 321.87 -7.98 -38.85 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -3.25 Total: 3.04 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -1.42 Total: -2.03 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.35 Total: -38.96 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.59 Total: -17.29 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -2.90 Total: -3.91 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.86 -7.98 -38.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176271757.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.896 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds