Wall clock time and date at job start Tue Mar 31 2020 11:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35675 * 116.99788 * 2 1 4 4 C 1.38635 * 120.13168 * 0.28409 * 3 2 1 5 5 C 1.38208 * 120.08478 * 180.27166 * 4 3 2 6 6 Cl 1.73595 * 119.82276 * 179.71867 * 5 4 3 7 7 C 1.38793 * 120.35143 * 359.69939 * 5 4 3 8 8 Cl 1.73594 * 119.86888 * 179.97438 * 7 5 4 9 9 C 1.37830 * 120.25949 * 0.02562 * 7 5 4 10 10 C 1.39758 * 119.90933 * 359.97438 * 9 7 5 11 11 C 1.47476 * 120.17307 * 179.97438 * 10 9 7 12 12 O 1.21590 * 120.00102 * 180.02562 * 11 10 9 13 13 N 1.34775 * 119.99719 * 0.02562 * 11 10 9 14 14 C 1.46506 * 119.99693 * 179.97438 * 13 11 10 15 15 H 1.08996 * 109.46660 * 35.00912 * 14 13 11 16 16 C 1.52997 * 109.47289 * 275.00198 * 14 13 11 17 17 C 1.50699 * 109.46928 * 155.00268 * 14 13 11 18 18 H 1.08003 * 119.99962 * 0.02562 * 17 14 13 19 19 C 1.37874 * 120.00270 * 180.02562 * 17 14 13 20 20 N 1.31516 * 119.99500 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 120.00390 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.46755 * 90.00226 * 21 19 17 23 23 H 1.48498 * 109.46866 * 210.00212 * 21 19 17 24 24 H 1.48496 * 109.47178 * 330.00276 * 21 19 17 25 25 H 1.08999 * 109.47249 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46857 * 299.99699 * 1 2 3 27 27 H 1.09005 * 109.47274 * 59.99509 * 1 2 3 28 28 H 1.08002 * 119.95821 * 0.02562 * 4 3 2 29 29 H 1.08000 * 120.04450 * 179.97438 * 9 7 5 30 30 H 0.97000 * 120.00190 * 0.02562 * 13 11 10 31 31 H 1.09002 * 109.47153 * 179.97438 * 16 14 13 32 32 H 1.09001 * 109.46832 * 60.00146 * 16 14 13 33 33 H 1.09004 * 109.47261 * 300.00128 * 16 14 13 34 34 H 0.97002 * 119.99804 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2925 2.3733 0.0059 5 6 1.9209 3.6042 0.0003 6 17 0.9720 5.0579 0.0004 7 6 3.3065 3.6843 -0.0051 8 17 4.0827 5.2370 -0.0129 9 6 4.0685 2.5359 -0.0054 10 6 3.4444 1.2854 0.0003 11 6 4.2542 0.0528 -0.0005 12 8 3.7080 -1.0335 0.0040 13 7 5.5997 0.1305 -0.0062 14 6 6.4041 -1.0939 -0.0065 15 1 5.8976 -1.8611 -0.5920 16 6 6.5850 -1.5856 1.4310 17 6 7.7537 -0.8082 -0.6132 18 1 7.9888 0.1861 -0.9631 19 6 8.6882 -1.8160 -0.7215 20 7 8.4016 -3.0269 -0.2958 21 14 10.3608 -1.4621 -1.4742 22 1 11.3043 -1.0405 -0.4077 23 1 10.8760 -2.6883 -2.1345 24 1 10.2318 -0.3760 -2.4786 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 0.2139 2.3184 0.0110 29 1 5.1465 2.6022 -0.0100 30 1 6.0355 0.9971 -0.0095 31 1 7.1831 -2.4969 1.4307 32 1 5.6088 -1.7923 1.8698 33 1 7.0915 -0.8183 2.0165 34 1 9.0593 -3.7360 -0.3716 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176271757.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:02 Heat of formation + Delta-G solvation = -80.144296 kcal Electronic energy + Delta-G solvation = -21639.048856 eV Core-core repulsion = 18009.430850 eV Total energy + Delta-G solvation = -3629.618006 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.79192 -40.05419 -39.02707 -37.67098 -37.21446 -36.67759 -34.38873 -32.69103 -31.24847 -30.53472 -28.21787 -27.32565 -25.42494 -23.67545 -22.82779 -21.29120 -19.99647 -18.87879 -18.04599 -17.76923 -17.01838 -16.93508 -16.73472 -16.27058 -15.82977 -15.61291 -15.14938 -14.91896 -14.75563 -14.39114 -14.06623 -13.68819 -13.32153 -13.01209 -12.98090 -12.94178 -12.77169 -12.68925 -12.47974 -12.28709 -12.24800 -12.12457 -11.99217 -11.62721 -11.08915 -10.81361 -10.57446 -10.26252 -9.78208 -9.35333 -8.15808 -6.33222 -0.60695 -0.10873 0.64432 1.01306 1.47024 1.47754 1.58258 1.65818 2.16090 2.32515 2.53528 2.55420 3.14960 3.35070 3.65953 3.67019 3.96514 4.22006 4.34071 4.37053 4.38976 4.59009 4.62213 4.75715 4.79151 4.94044 5.09708 5.10666 5.44149 5.60488 5.69031 5.90575 6.10479 6.20578 6.73382 6.92072 7.32644 7.50497 8.90701 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.016135 B = 0.003770 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.912156 B = 7424.803976 C = 8894.252583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.303 6.303 3 C 0.194 3.806 4 C -0.190 4.190 5 C 0.033 3.967 6 Cl -0.025 7.025 7 C -0.082 4.082 8 Cl -0.037 7.037 9 C -0.020 4.020 10 C -0.170 4.170 11 C 0.544 3.456 12 O -0.572 6.572 13 N -0.700 5.700 14 C 0.272 3.728 15 H 0.001 0.999 16 C -0.134 4.134 17 C -0.547 4.547 18 H 0.074 0.926 19 C 0.016 3.984 20 N -0.917 5.917 21 Si 0.972 3.028 22 H -0.271 1.271 23 H -0.287 1.287 24 H -0.264 1.264 25 H 0.113 0.887 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.184 0.816 29 H 0.164 0.836 30 H 0.402 0.598 31 H 0.068 0.932 32 H 0.011 0.989 33 H 0.041 0.959 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.594 17.012 1.094 23.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.214 6.214 3 C 0.144 3.856 4 C -0.209 4.209 5 C 0.005 3.995 6 Cl 0.004 6.996 7 C -0.110 4.110 8 Cl -0.008 7.008 9 C -0.039 4.039 10 C -0.174 4.174 11 C 0.331 3.669 12 O -0.453 6.453 13 N -0.350 5.350 14 C 0.169 3.831 15 H 0.019 0.981 16 C -0.192 4.192 17 C -0.585 4.585 18 H 0.093 0.907 19 C -0.184 4.184 20 N -0.555 5.555 21 Si 0.797 3.203 22 H -0.196 1.196 23 H -0.213 1.213 24 H -0.188 1.188 25 H 0.131 0.869 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.201 0.799 29 H 0.182 0.818 30 H 0.238 0.762 31 H 0.087 0.913 32 H 0.030 0.970 33 H 0.060 0.940 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.826 16.105 1.108 22.607 hybrid contribution 0.883 0.293 -0.288 0.974 sum -14.943 16.398 0.820 22.201 Atomic orbital electron populations 1.23607 0.75845 1.06111 1.03325 1.86463 1.23876 1.25156 1.85920 1.19064 0.90559 0.85525 0.90447 1.21199 1.02386 0.88213 1.09091 1.20716 0.89880 0.89325 0.99606 1.98408 1.70949 1.34079 1.96173 1.20416 0.91022 0.88393 1.11202 1.98390 1.80402 1.25012 1.97023 1.21122 1.01342 0.88119 0.93364 1.19479 0.91659 0.93422 1.12879 1.18324 0.82802 0.88639 0.77098 1.90762 1.72371 1.30349 1.51814 1.46213 1.05126 1.11168 1.72503 1.18379 0.89200 0.82117 0.93391 0.98084 1.21903 0.97970 1.02003 0.97370 1.21533 0.98336 0.97324 1.41323 0.90743 1.25781 1.02640 0.94521 0.95475 1.70056 1.36422 1.02172 1.46880 0.85343 0.78685 0.77666 0.78637 1.19609 1.21286 1.18794 0.86884 0.90177 0.90252 0.79896 0.81819 0.76166 0.91326 0.96962 0.94000 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.08 9.81 113.37 1.11 1.19 16 2 O -0.30 -9.15 8.56 -68.99 -0.59 -9.74 16 3 C 0.19 5.42 6.70 22.83 0.15 5.57 16 4 C -0.19 -3.78 8.80 22.36 0.20 -3.58 16 5 C 0.03 0.67 6.32 22.40 0.14 0.81 16 6 Cl -0.03 -0.43 27.93 -2.72 -0.08 -0.50 16 7 C -0.08 -1.84 6.31 22.31 0.14 -1.70 16 8 Cl -0.04 -0.75 27.93 -2.72 -0.08 -0.82 16 9 C -0.02 -0.51 9.31 22.54 0.21 -0.30 16 10 C -0.17 -5.43 5.89 -20.01 -0.12 -5.55 16 11 C 0.54 23.05 7.73 86.68 0.67 23.72 16 12 O -0.57 -29.14 14.82 16.94 0.25 -28.89 16 13 N -0.70 -29.87 5.02 -449.34 -2.26 -32.13 16 14 C 0.27 14.29 2.56 44.24 0.11 14.40 16 15 H 0.00 0.08 7.58 -2.39 -0.02 0.06 16 16 C -0.13 -6.86 9.26 71.98 0.67 -6.19 16 17 C -0.55 -28.94 8.73 25.60 0.22 -28.72 16 18 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 19 C 0.02 0.86 5.30 84.65 0.45 1.30 16 20 N -0.92 -52.60 11.32 21.45 0.24 -52.36 16 21 Si 0.97 41.86 29.54 68.60 2.03 43.88 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 25 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.08 0.96 7.65 -2.39 -0.02 0.94 16 27 H 0.08 0.96 7.67 -2.38 -0.02 0.95 16 28 H 0.18 2.37 6.30 -2.91 -0.02 2.35 16 29 H 0.16 3.71 6.40 -2.91 -0.02 3.69 16 30 H 0.40 14.28 6.57 -92.71 -0.61 13.67 16 31 H 0.07 3.83 6.07 -2.39 -0.01 3.81 16 32 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -69.06 321.87 4.04 -65.02 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.55 Total: 14.58 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 3.96 Total: 0.96 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -2.01 Total: -84.49 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -0.34 Total: -38.63 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.15 Total: -1.33 kcal Total: -69.06 4.04 -65.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176271757.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.122 kcal (2) G-P(sol) polarization free energy of solvation -69.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds