Wall clock time and date at job start Tue Mar 31 2020 11:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34237 * 116.99933 * 2 1 4 4 O 1.20828 * 119.99790 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99777 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.46739 * 179.97438 * 5 3 2 7 7 C 1.36940 * 120.00146 * 89.99834 * 6 5 3 8 8 H 1.07996 * 120.00086 * 210.37504 * 7 6 5 9 9 C 1.38812 * 119.99680 * 30.64491 * 7 6 5 10 10 N 1.31621 * 119.99912 * 209.75685 * 9 7 6 11 11 Si 1.86802 * 120.00269 * 29.76394 * 9 7 6 12 12 H 1.48502 * 109.46985 * 359.07479 * 11 9 7 13 13 H 1.48498 * 109.47323 * 119.07409 * 11 9 7 14 14 H 1.48499 * 109.47208 * 239.07677 * 11 9 7 15 15 C 1.46493 * 119.99814 * 269.99600 * 6 5 3 16 16 C 1.50701 * 109.47412 * 271.66331 * 15 6 5 17 17 C 1.38271 * 119.97786 * 268.37890 * 16 15 6 18 18 C 1.38208 * 120.03384 * 179.76605 * 17 16 15 19 19 C 1.38347 * 120.00065 * 0.50363 * 18 17 16 20 20 Cl 1.73600 * 120.01996 * 179.72567 * 19 18 17 21 21 C 1.38448 * 119.96151 * 359.74725 * 19 18 17 22 22 Cl 1.73596 * 120.01714 * 180.02562 * 21 19 18 23 23 C 1.38203 * 119.98354 * 88.64944 * 16 15 6 24 24 H 1.08996 * 109.46987 * 59.99967 * 1 2 3 25 25 H 1.08998 * 109.46750 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46934 * 299.99893 * 1 2 3 27 27 H 1.08997 * 109.47312 * 59.99804 * 5 3 2 28 28 H 1.09000 * 109.47143 * 299.99584 * 5 3 2 29 29 H 0.97002 * 119.99820 * 179.97438 * 10 9 7 30 30 H 1.08994 * 109.47432 * 31.66286 * 15 6 5 31 31 H 1.09008 * 109.47117 * 151.66563 * 15 6 5 32 32 H 1.07991 * 119.98673 * 359.97438 * 17 16 15 33 33 H 1.08002 * 119.99937 * 180.25258 * 18 17 16 34 34 H 1.08005 * 119.99669 * 359.95888 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.1762 3.3367 1.1846 8 1 3.9974 4.3999 1.2486 9 6 4.6087 2.6371 2.3028 10 7 4.2605 3.0400 3.5065 11 14 5.6849 1.1239 2.0994 12 1 5.9137 0.8699 0.6542 13 1 6.9881 1.3489 2.7748 14 1 5.0085 -0.0500 2.7072 15 6 4.1889 3.3818 -1.2700 16 6 5.6118 3.1857 -1.7261 17 6 6.5852 4.0988 -1.3648 18 6 7.8915 3.9175 -1.7784 19 6 8.2236 2.8276 -2.5631 20 17 9.8628 2.6032 -3.0888 21 6 7.2479 1.9162 -2.9292 22 17 7.6632 0.5477 -3.9133 23 6 5.9419 2.0964 -2.5100 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.9557 0.7809 -0.8908 28 1 3.9564 0.7807 0.8892 29 1 4.5624 2.5509 4.2879 30 1 3.5082 2.9824 -2.0217 31 1 3.9948 4.4457 -1.1326 32 1 6.3254 4.9523 -0.7562 33 1 8.6521 4.6289 -1.4924 34 1 5.1803 1.3856 -2.7950 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177617253.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:06 Heat of formation + Delta-G solvation = -42.626534 kcal Electronic energy + Delta-G solvation = -22084.090087 eV Core-core repulsion = 18456.098973 eV Total energy + Delta-G solvation = -3627.991114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.75169 -39.27261 -36.81615 -36.41301 -36.11539 -35.17563 -32.24282 -30.97940 -30.69811 -28.54549 -26.60071 -25.95374 -22.82701 -22.55517 -21.11901 -20.18761 -17.38311 -17.17856 -16.90941 -16.18313 -15.69247 -15.62436 -15.41412 -14.96721 -14.49669 -13.82564 -13.72744 -13.62095 -13.17500 -12.96614 -12.66753 -12.44192 -11.87899 -11.81730 -11.79706 -11.59132 -11.43010 -11.06000 -10.93838 -10.84099 -10.74110 -10.68988 -10.45449 -10.24892 -9.85978 -9.58115 -8.82877 -8.73254 -8.40107 -7.35291 -6.25457 -3.56465 1.18033 1.31780 1.95522 2.33391 2.96968 3.18952 3.29309 3.35688 3.39105 3.69731 4.31046 4.74362 4.77583 5.04839 5.18804 5.32319 5.41247 5.43060 5.47527 5.51937 5.58666 5.72834 5.78784 5.86846 5.97116 6.03048 6.13142 6.30841 6.41546 6.78316 6.86251 7.00297 7.63726 8.09268 8.48217 8.69324 9.42655 9.73232 10.88445 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.014363 B = 0.004876 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.937679 B = 5741.595606 C = 6564.804276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.377 6.377 3 C 0.425 3.575 4 O -0.490 6.490 5 C 0.155 3.845 6 N -0.561 5.561 7 C -0.275 4.275 8 H 0.089 0.911 9 C 0.043 3.957 10 N -0.872 5.872 11 Si 0.843 3.157 12 H -0.258 1.258 13 H -0.289 1.289 14 H -0.284 1.284 15 C 0.182 3.818 16 C -0.068 4.068 17 C -0.080 4.080 18 C -0.101 4.101 19 C -0.044 4.044 20 Cl -0.067 7.067 21 C -0.031 4.031 22 Cl -0.066 7.066 23 C -0.099 4.099 24 H 0.054 0.946 25 H 0.090 0.910 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.267 0.733 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.141 0.859 33 H 0.137 0.863 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.449 -3.216 -12.560 13.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.294 6.294 3 C 0.264 3.736 4 O -0.374 6.374 5 C 0.025 3.975 6 N -0.279 5.279 7 C -0.402 4.402 8 H 0.107 0.893 9 C -0.160 4.160 10 N -0.510 5.510 11 Si 0.670 3.330 12 H -0.182 1.182 13 H -0.216 1.216 14 H -0.210 1.210 15 C 0.057 3.943 16 C -0.072 4.072 17 C -0.099 4.099 18 C -0.120 4.120 19 C -0.072 4.072 20 Cl -0.039 7.039 21 C -0.059 4.059 22 Cl -0.037 7.037 23 C -0.118 4.118 24 H 0.073 0.927 25 H 0.108 0.892 26 H 0.076 0.924 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.159 0.841 33 H 0.155 0.845 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.373 -3.020 -12.465 13.261 hybrid contribution 0.684 -1.110 0.161 1.314 sum 4.057 -4.130 -12.304 13.598 Atomic orbital electron populations 1.23075 0.78461 1.02465 1.01963 1.86606 1.22136 1.35687 1.84980 1.26390 0.94111 0.80914 0.72160 1.90580 1.66691 1.36312 1.43832 1.21073 0.85201 0.88695 1.02491 1.43865 1.73073 1.08256 1.02718 1.18760 1.41454 0.95228 0.84799 0.89340 1.25323 0.97971 0.97685 0.94974 1.69984 1.41679 1.41250 0.98069 0.87328 0.82594 0.83921 0.79141 1.18216 1.21648 1.21045 1.20069 0.88149 0.98723 0.87390 1.21133 1.00090 0.92887 0.93051 1.21200 0.91234 0.99855 0.97643 1.21036 0.97594 0.96218 0.97151 1.20646 0.85419 0.97995 1.03133 1.98352 1.19085 1.96950 1.89466 1.20701 0.94148 0.91145 0.99873 1.98356 1.93814 1.42735 1.68775 1.20915 0.93622 0.98695 0.98601 0.92677 0.89160 0.92391 0.89742 0.89582 0.92305 0.92356 0.90438 0.84084 0.84511 0.84761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 101.05 1.07 1.56 16 2 O -0.38 -6.80 10.57 -39.27 -0.41 -7.21 16 3 C 0.43 8.80 8.03 36.01 0.29 9.09 16 4 O -0.49 -11.40 16.18 -18.75 -0.30 -11.70 16 5 C 0.15 3.16 4.78 -5.19 -0.02 3.13 16 6 N -0.56 -12.08 1.65 -175.99 -0.29 -12.37 16 7 C -0.27 -7.02 9.90 -15.06 -0.15 -7.17 16 8 H 0.09 2.43 8.06 -52.49 -0.42 2.01 16 9 C 0.04 1.16 5.21 -17.43 -0.09 1.07 16 10 N -0.87 -25.14 13.97 55.49 0.78 -24.36 16 11 Si 0.84 20.12 25.24 -169.99 -4.29 15.83 16 12 H -0.26 -5.80 6.40 56.52 0.36 -5.44 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 C 0.18 3.17 5.79 -5.20 -0.03 3.14 16 16 C -0.07 -1.09 5.46 -104.62 -0.57 -1.66 16 17 C -0.08 -1.22 9.69 -39.58 -0.38 -1.60 16 18 C -0.10 -1.42 9.83 -39.55 -0.39 -1.81 16 19 C -0.04 -0.65 6.32 -39.46 -0.25 -0.90 16 20 Cl -0.07 -0.90 27.96 -51.86 -1.45 -2.35 16 21 C -0.03 -0.47 6.32 -39.47 -0.25 -0.72 16 22 Cl -0.07 -0.90 27.96 -51.86 -1.45 -2.35 16 23 C -0.10 -1.49 9.40 -39.56 -0.37 -1.86 16 24 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 25 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.86 8.13 -51.93 -0.42 0.43 16 27 H 0.08 1.44 7.77 -51.93 -0.40 1.04 16 28 H 0.09 1.91 3.31 -51.93 -0.17 1.74 16 29 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.06 0.92 8.04 -51.93 -0.42 0.50 16 31 H 0.08 1.32 7.96 -51.92 -0.41 0.91 16 32 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 33 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.13 1.82 7.84 -52.48 -0.41 1.41 16 LS Contribution 327.26 15.07 4.93 4.93 Total: -1.00 -30.03 327.26 -7.18 -37.21 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -3.53 Total: 0.10 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -1.15 Total: 2.27 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.48 Total: -36.73 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.72 Total: -18.92 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.29 Total: 15.83 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -2.90 Total: -4.69 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.03 -7.18 -37.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177617253.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.418 kcal (2) G-P(sol) polarization free energy of solvation -30.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds