Wall clock time and date at job start Tue Mar 31 2020 11:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34237 * 116.99933 * 2 1 4 4 O 1.20828 * 119.99790 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99777 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.46739 * 179.97438 * 5 3 2 7 7 C 1.36940 * 120.00146 * 89.99834 * 6 5 3 8 8 H 1.07996 * 120.00086 * 210.37504 * 7 6 5 9 9 C 1.38812 * 119.99680 * 30.64491 * 7 6 5 10 10 N 1.31621 * 119.99912 * 209.75685 * 9 7 6 11 11 Si 1.86802 * 120.00269 * 29.76394 * 9 7 6 12 12 H 1.48502 * 109.46985 * 359.07479 * 11 9 7 13 13 H 1.48498 * 109.47323 * 119.07409 * 11 9 7 14 14 H 1.48499 * 109.47208 * 239.07677 * 11 9 7 15 15 C 1.46493 * 119.99814 * 269.99600 * 6 5 3 16 16 C 1.50701 * 109.47412 * 271.66331 * 15 6 5 17 17 C 1.38271 * 119.97786 * 268.37890 * 16 15 6 18 18 C 1.38208 * 120.03384 * 179.76605 * 17 16 15 19 19 C 1.38347 * 120.00065 * 0.50363 * 18 17 16 20 20 Cl 1.73600 * 120.01996 * 179.72567 * 19 18 17 21 21 C 1.38448 * 119.96151 * 359.74725 * 19 18 17 22 22 Cl 1.73596 * 120.01714 * 180.02562 * 21 19 18 23 23 C 1.38203 * 119.98354 * 88.64944 * 16 15 6 24 24 H 1.08996 * 109.46987 * 59.99967 * 1 2 3 25 25 H 1.08998 * 109.46750 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46934 * 299.99893 * 1 2 3 27 27 H 1.08997 * 109.47312 * 59.99804 * 5 3 2 28 28 H 1.09000 * 109.47143 * 299.99584 * 5 3 2 29 29 H 0.97002 * 119.99820 * 179.97438 * 10 9 7 30 30 H 1.08994 * 109.47432 * 31.66286 * 15 6 5 31 31 H 1.09008 * 109.47117 * 151.66563 * 15 6 5 32 32 H 1.07991 * 119.98673 * 359.97438 * 17 16 15 33 33 H 1.08002 * 119.99937 * 180.25258 * 18 17 16 34 34 H 1.08005 * 119.99669 * 359.95888 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.1762 3.3367 1.1846 8 1 3.9974 4.3999 1.2486 9 6 4.6087 2.6371 2.3028 10 7 4.2605 3.0400 3.5065 11 14 5.6849 1.1239 2.0994 12 1 5.9137 0.8699 0.6542 13 1 6.9881 1.3489 2.7748 14 1 5.0085 -0.0500 2.7072 15 6 4.1889 3.3818 -1.2700 16 6 5.6118 3.1857 -1.7261 17 6 6.5852 4.0988 -1.3648 18 6 7.8915 3.9175 -1.7784 19 6 8.2236 2.8276 -2.5631 20 17 9.8628 2.6032 -3.0888 21 6 7.2479 1.9162 -2.9292 22 17 7.6632 0.5477 -3.9133 23 6 5.9419 2.0964 -2.5100 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.9557 0.7809 -0.8908 28 1 3.9564 0.7807 0.8892 29 1 4.5624 2.5509 4.2879 30 1 3.5082 2.9824 -2.0217 31 1 3.9948 4.4457 -1.1326 32 1 6.3254 4.9523 -0.7562 33 1 8.6521 4.6289 -1.4924 34 1 5.1803 1.3856 -2.7950 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177617253.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:06 Heat of formation + Delta-G solvation = -58.385358 kcal Electronic energy + Delta-G solvation = -22084.773441 eV Core-core repulsion = 18456.098973 eV Total energy + Delta-G solvation = -3628.674468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.28850 -40.48254 -38.19012 -37.50043 -37.42735 -36.76516 -34.03827 -32.42183 -31.84964 -30.01481 -27.87881 -27.60408 -24.24156 -23.85970 -22.51313 -21.70670 -19.14014 -18.67260 -18.21969 -17.72524 -17.13822 -16.94434 -16.67435 -16.55498 -16.02598 -15.11438 -14.95941 -14.84994 -14.70718 -14.43949 -14.31155 -14.05179 -13.32408 -13.07487 -12.92358 -12.87153 -12.81532 -12.61314 -12.32629 -12.18901 -12.16464 -11.97570 -11.83501 -11.67327 -11.66180 -11.30118 -10.74294 -9.89475 -9.58308 -9.13725 -8.27641 -5.55872 0.00551 0.17600 0.84755 1.21521 1.25676 1.37834 1.46740 1.50218 1.87346 2.36113 2.49444 2.97150 3.36287 3.67599 3.88304 4.12772 4.14739 4.21789 4.27920 4.30939 4.36975 4.38287 4.43902 4.59323 4.71434 4.82033 4.94413 5.04744 5.16129 5.49519 5.56062 5.69018 5.81168 6.11679 6.71815 7.00416 7.49779 7.85252 8.91241 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.014363 B = 0.004876 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.937679 B = 5741.595606 C = 6564.804276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.376 6.376 3 C 0.429 3.571 4 O -0.525 6.525 5 C 0.149 3.851 6 N -0.573 5.573 7 C -0.254 4.254 8 H 0.054 0.946 9 C -0.010 4.010 10 N -0.929 5.929 11 Si 0.902 3.098 12 H -0.232 1.232 13 H -0.303 1.303 14 H -0.286 1.286 15 C 0.184 3.816 16 C -0.078 4.078 17 C -0.088 4.088 18 C -0.100 4.100 19 C -0.048 4.048 20 Cl -0.055 7.055 21 C -0.040 4.040 22 Cl -0.054 7.054 23 C -0.098 4.098 24 H 0.063 0.937 25 H 0.132 0.868 26 H 0.046 0.954 27 H 0.124 0.876 28 H 0.071 0.929 29 H 0.264 0.736 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.141 0.859 33 H 0.158 0.842 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.139 -4.944 -14.780 16.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.292 6.292 3 C 0.270 3.730 4 O -0.412 6.412 5 C 0.020 3.980 6 N -0.292 5.292 7 C -0.383 4.383 8 H 0.072 0.928 9 C -0.208 4.208 10 N -0.571 5.571 11 Si 0.729 3.271 12 H -0.155 1.155 13 H -0.231 1.231 14 H -0.212 1.212 15 C 0.060 3.940 16 C -0.081 4.081 17 C -0.107 4.107 18 C -0.119 4.119 19 C -0.076 4.076 20 Cl -0.026 7.026 21 C -0.068 4.068 22 Cl -0.025 7.025 23 C -0.117 4.117 24 H 0.082 0.918 25 H 0.151 0.849 26 H 0.065 0.935 27 H 0.142 0.858 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.159 0.841 33 H 0.176 0.824 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.073 -4.781 -14.754 16.035 hybrid contribution 0.406 -0.551 0.692 0.973 sum 4.479 -5.332 -14.062 15.691 Atomic orbital electron populations 1.23439 0.76016 1.05257 1.01868 1.86558 1.24415 1.33964 1.84273 1.26291 0.94368 0.81086 0.71303 1.90571 1.67472 1.37546 1.45622 1.21185 0.85197 0.88114 1.03512 1.43877 1.73972 1.08666 1.02724 1.18587 1.39343 0.93971 0.86411 0.92813 1.25815 0.99535 1.00814 0.94608 1.70098 1.44289 1.43760 0.98945 0.86394 0.79937 0.80631 0.80150 1.15508 1.23150 1.21247 1.20085 0.89715 0.98152 0.86057 1.20912 0.98966 0.93833 0.94343 1.21323 0.91786 0.99940 0.97639 1.21241 0.97591 0.96473 0.96555 1.20843 0.86093 0.97904 1.02755 1.98359 1.18111 1.96891 1.89282 1.20816 0.94237 0.91652 1.00082 1.98361 1.93725 1.42040 1.68372 1.21059 0.94191 0.98443 0.98010 0.91815 0.84942 0.93546 0.85791 0.91109 0.92670 0.90373 0.90989 0.84122 0.82445 0.83062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.56 113.37 1.20 1.91 16 2 O -0.38 -12.69 10.57 -51.48 -0.54 -13.23 16 3 C 0.43 17.13 8.03 71.24 0.57 17.70 16 4 O -0.52 -24.20 16.18 21.96 0.36 -23.85 16 5 C 0.15 5.76 4.78 85.63 0.41 6.17 16 6 N -0.57 -24.14 1.65 -710.70 -1.17 -25.32 16 7 C -0.25 -13.19 9.90 84.03 0.83 -12.36 16 8 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 9 C -0.01 -0.53 5.21 84.86 0.44 -0.09 16 10 N -0.93 -55.55 13.97 21.65 0.30 -55.24 16 11 Si 0.90 41.77 25.24 68.60 1.73 43.50 16 12 H -0.23 -9.61 6.40 99.48 0.64 -8.98 16 13 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 14 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 15 C 0.18 6.15 5.79 85.63 0.50 6.65 16 16 C -0.08 -2.32 5.46 -19.86 -0.11 -2.43 16 17 C -0.09 -2.53 9.69 22.27 0.22 -2.32 16 18 C -0.10 -2.59 9.83 22.29 0.22 -2.37 16 19 C -0.05 -1.28 6.32 22.35 0.14 -1.14 16 20 Cl -0.06 -1.33 27.96 -2.72 -0.08 -1.41 16 21 C -0.04 -1.09 6.32 22.34 0.14 -0.95 16 22 Cl -0.05 -1.31 27.96 -2.72 -0.08 -1.39 16 23 C -0.10 -2.65 9.40 22.29 0.21 -2.44 16 24 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16 25 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.05 1.31 8.13 -2.39 -0.02 1.29 16 27 H 0.12 3.76 7.77 -2.39 -0.02 3.74 16 28 H 0.07 3.00 3.31 -2.39 -0.01 3.00 16 29 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 30 H 0.08 2.28 8.04 -2.39 -0.02 2.26 16 31 H 0.07 2.45 7.96 -2.38 -0.02 2.43 16 32 H 0.14 3.99 8.06 -2.92 -0.02 3.97 16 33 H 0.16 3.34 8.06 -2.91 -0.02 3.31 16 34 H 0.15 3.50 7.84 -2.91 -0.02 3.48 16 Total: -1.00 -65.59 327.26 6.35 -59.25 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 1.06 Total: 9.34 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 4.77 Total: 8.35 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -0.87 Total: -80.56 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -0.19 Total: -37.08 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.73 Total: 43.50 kcal Atomic # 17 Polarization: -2.64 SS G_CDS: -0.15 Total: -2.79 kcal Total: -65.59 6.35 -59.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177617253.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.860 kcal (2) G-P(sol) polarization free energy of solvation -65.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds