Wall clock time and date at job start Tue Mar 31 2020 12:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99797 * 2 1 4 4 H 1.48497 * 109.47431 * 239.99683 * 3 2 1 5 5 H 1.48494 * 109.47365 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46620 * 120.00083 * 3 2 1 7 7 C 1.37877 * 119.99781 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99620 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00166 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47154 * 180.02562 * 9 7 2 11 11 S 1.81398 * 109.47304 * 180.02562 * 10 9 7 12 12 O 1.42097 * 110.54089 * 68.37604 * 11 10 9 13 13 O 1.42098 * 110.54176 * 291.62693 * 11 10 9 14 14 N 1.65598 * 104.45002 * 180.02562 * 11 10 9 15 15 C 1.34783 * 119.99737 * 64.99931 * 14 11 10 16 16 O 1.21276 * 119.99950 * 0.02562 * 15 14 11 17 17 C 1.50704 * 119.99432 * 179.97438 * 15 14 11 18 18 C 1.53005 * 109.46526 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.46909 * 180.02562 * 18 17 15 20 20 C 1.38423 * 122.53613 * 270.00211 * 19 18 17 21 21 C 1.33390 * 114.91977 * 180.02562 * 20 19 18 22 22 S 1.75887 * 109.59565 * 359.75483 * 21 20 19 23 23 C 1.33391 * 122.54338 * 90.02238 * 19 18 17 24 24 H 0.96994 * 120.00253 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47108 * 60.00400 * 9 7 2 26 26 H 1.08994 * 109.47748 * 300.00177 * 9 7 2 27 27 H 1.09001 * 109.46879 * 60.00146 * 10 9 7 28 28 H 1.09000 * 109.47230 * 300.00768 * 10 9 7 29 29 H 0.96995 * 120.00120 * 244.99946 * 14 11 10 30 30 H 1.08994 * 109.46984 * 60.00404 * 17 15 14 31 31 H 1.08994 * 109.47395 * 299.99944 * 17 15 14 32 32 H 1.08994 * 109.47301 * 60.00425 * 18 17 15 33 33 H 1.09003 * 109.46866 * 299.99861 * 18 17 15 34 34 H 1.08001 * 122.53963 * 0.04211 * 20 19 18 35 35 H 1.07998 * 125.20164 * 180.02562 * 21 20 19 36 36 H 1.08002 * 125.19887 * 359.95301 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3383 -5.2331 -0.0013 12 8 0.6648 -5.4193 -1.2386 13 8 0.6639 -5.4201 1.2354 14 7 2.5205 -6.3927 -0.0005 15 6 3.3462 -6.5125 1.0580 16 8 3.2231 -5.7713 2.0100 17 6 4.4217 -7.5683 1.0589 18 6 5.2114 -7.4905 2.3671 19 6 6.2872 -8.5458 2.3678 20 6 6.0776 -9.8224 2.8603 21 6 7.1339 -10.6336 2.7869 22 16 8.4852 -9.7778 2.0555 23 6 7.5137 -8.3205 1.8942 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5572 0.8896 27 1 2.8719 -3.6044 0.8895 28 1 2.8720 -3.6043 -0.8904 29 1 2.6187 -6.9857 -0.7618 30 1 5.0944 -7.4022 0.2175 31 1 3.9639 -8.5533 0.9692 32 1 4.5384 -7.6568 3.2082 33 1 5.6691 -6.5054 2.4571 34 1 5.1305 -10.1377 3.2726 35 1 7.1547 -11.6604 3.1210 36 1 7.8563 -7.3872 1.4722 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181261903.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:31 Heat of formation + Delta-G solvation = -92.899409 kcal Electronic energy + Delta-G solvation = -21328.503872 eV Core-core repulsion = 17838.253270 eV Total energy + Delta-G solvation = -3490.250602 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.24119 -38.56598 -36.70478 -35.62089 -34.45607 -33.89702 -33.14855 -31.18504 -29.52775 -26.01109 -25.59661 -23.12564 -21.71619 -21.25151 -19.37804 -19.00539 -18.08889 -17.80543 -17.38423 -16.56143 -16.11122 -15.61507 -15.19337 -15.05578 -14.72286 -14.52624 -13.80570 -13.56411 -13.41195 -13.31113 -12.74893 -12.61499 -12.51003 -12.21660 -12.09078 -11.80745 -11.72903 -11.61966 -11.33344 -11.07024 -11.04373 -11.00431 -10.86546 -10.42738 -10.38478 -10.23645 -9.71388 -9.19478 -9.13249 -8.70392 -8.49619 -6.12109 -4.17720 0.49550 0.68325 1.34232 1.66465 2.07625 2.33665 2.76326 3.28248 3.32842 3.34861 3.98641 4.16884 4.37399 4.55252 4.59761 4.69643 4.78043 4.81771 4.95850 5.17625 5.20660 5.23078 5.28347 5.46924 5.59117 5.71909 5.72963 5.83028 6.11347 6.19367 6.45263 6.62875 7.28149 7.34981 7.45554 7.80615 8.16651 8.84993 9.46764 10.98994 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.018423 B = 0.002696 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.514948 B =10381.937934 C =11467.560061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.902 3.098 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.575 4.575 11 S 2.565 3.435 12 O -0.956 6.956 13 O -0.939 6.939 14 N -1.060 6.060 15 C 0.532 3.468 16 O -0.489 6.489 17 C -0.136 4.136 18 C -0.052 4.052 19 C -0.100 4.100 20 C -0.129 4.129 21 C -0.212 4.212 22 S 0.087 5.913 23 C -0.208 4.208 24 H 0.266 0.734 25 H 0.034 0.966 26 H 0.036 0.964 27 H 0.131 0.869 28 H 0.121 0.879 29 H 0.428 0.572 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.142 0.858 35 H 0.163 0.837 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.710 -21.846 1.596 26.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.009 4.009 10 C -0.710 4.710 11 S 2.666 3.334 12 O -0.946 6.946 13 O -0.929 6.929 14 N -0.821 5.821 15 C 0.318 3.682 16 O -0.360 6.360 17 C -0.178 4.178 18 C -0.092 4.092 19 C -0.112 4.112 20 C -0.160 4.160 21 C -0.348 4.348 22 S 0.350 5.650 23 C -0.343 4.343 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.149 0.851 28 H 0.139 0.861 29 H 0.263 0.737 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.160 0.840 35 H 0.181 0.819 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 16.041 -21.838 1.962 27.167 hybrid contribution -0.356 1.149 -0.165 1.214 sum 15.685 -20.689 1.797 26.025 Atomic orbital electron populations 1.69943 1.06114 1.27357 1.49443 1.25066 0.94995 0.99545 0.94857 0.86503 0.79477 0.82415 0.78722 1.20082 1.21059 1.20021 1.20938 0.93057 0.89613 1.52340 0.92027 1.18982 0.92624 0.90321 0.99011 1.30337 1.13706 1.16252 1.10713 1.06692 0.75014 0.77280 0.74445 1.93589 1.70595 1.85324 1.45109 1.93595 1.70318 1.84370 1.44603 1.55444 1.49397 1.50378 1.26923 1.20687 0.81673 0.85030 0.80822 1.90919 1.69468 1.43148 1.32433 1.21791 0.96427 0.98682 1.00897 1.20146 0.94780 0.97389 0.96933 1.18944 0.95213 0.95733 1.01355 1.20170 1.00087 0.93022 1.02701 1.25612 0.96667 1.04148 1.08349 1.84334 1.16070 1.04537 1.60009 1.25557 0.97284 1.02402 1.09101 0.92440 0.94773 0.94587 0.85073 0.86093 0.73674 0.87750 0.87823 0.89496 0.89580 0.84025 0.81908 0.81663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.03 0.77 4.98 -27.88 -0.14 0.63 16 10 C -0.58 -11.30 5.82 37.16 0.22 -11.08 16 11 S 2.57 45.87 5.11 -107.50 -0.55 45.32 16 12 O -0.96 -18.74 18.08 -57.54 -1.04 -19.78 16 13 O -0.94 -20.39 17.03 -64.80 -1.10 -21.50 16 14 N -1.06 -12.68 5.60 31.22 0.17 -12.51 16 15 C 0.53 6.50 7.57 -10.98 -0.08 6.42 16 16 O -0.49 -8.07 14.08 -11.60 -0.16 -8.23 16 17 C -0.14 -1.04 5.68 -27.88 -0.16 -1.20 16 18 C -0.05 -0.44 4.76 -27.88 -0.13 -0.58 16 19 C -0.10 -0.79 5.06 -106.25 -0.54 -1.33 16 20 C -0.13 -0.96 9.98 -41.21 -0.41 -1.37 16 21 C -0.21 -1.44 11.23 29.04 0.33 -1.11 16 22 S 0.09 0.60 23.34 -107.50 -2.51 -1.90 16 23 C -0.21 -1.56 10.98 29.04 0.32 -1.24 16 24 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.13 2.52 7.19 -51.92 -0.37 2.15 16 28 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 29 H 0.43 3.29 8.79 -34.47 -0.30 2.99 16 30 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 33 H 0.09 0.78 8.08 -51.93 -0.42 0.36 16 34 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.16 0.77 8.06 -52.49 -0.42 0.34 16 36 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 341.09 15.07 5.14 5.14 Total: -1.00 -37.00 341.09 -9.79 -46.78 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -4.44 Total: 0.38 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: -1.01 Total: -24.14 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.91 Total: -38.41 kcal Atomic # 8 Polarization: -47.20 SS G_CDS: -2.31 Total: -49.51 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 46.47 SS G_CDS: -3.06 Total: 43.41 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -37.00 -9.79 -46.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181261903.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.117 kcal (2) G-P(sol) polarization free energy of solvation -36.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds