Wall clock time and date at job start Tue Mar 31 2020 12:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99797 * 2 1 4 4 H 1.48497 * 109.47431 * 239.99683 * 3 2 1 5 5 H 1.48494 * 109.47365 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46620 * 120.00083 * 3 2 1 7 7 C 1.37877 * 119.99781 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99620 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00166 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47154 * 180.02562 * 9 7 2 11 11 S 1.81398 * 109.47304 * 180.02562 * 10 9 7 12 12 O 1.42097 * 110.54089 * 68.37604 * 11 10 9 13 13 O 1.42098 * 110.54176 * 291.62693 * 11 10 9 14 14 N 1.65598 * 104.45002 * 180.02562 * 11 10 9 15 15 C 1.34783 * 119.99737 * 64.99931 * 14 11 10 16 16 O 1.21276 * 119.99950 * 0.02562 * 15 14 11 17 17 C 1.50704 * 119.99432 * 179.97438 * 15 14 11 18 18 C 1.53005 * 109.46526 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.46909 * 180.02562 * 18 17 15 20 20 C 1.38423 * 122.53613 * 270.00211 * 19 18 17 21 21 C 1.33390 * 114.91977 * 180.02562 * 20 19 18 22 22 S 1.75887 * 109.59565 * 359.75483 * 21 20 19 23 23 C 1.33391 * 122.54338 * 90.02238 * 19 18 17 24 24 H 0.96994 * 120.00253 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47108 * 60.00400 * 9 7 2 26 26 H 1.08994 * 109.47748 * 300.00177 * 9 7 2 27 27 H 1.09001 * 109.46879 * 60.00146 * 10 9 7 28 28 H 1.09000 * 109.47230 * 300.00768 * 10 9 7 29 29 H 0.96995 * 120.00120 * 244.99946 * 14 11 10 30 30 H 1.08994 * 109.46984 * 60.00404 * 17 15 14 31 31 H 1.08994 * 109.47395 * 299.99944 * 17 15 14 32 32 H 1.08994 * 109.47301 * 60.00425 * 18 17 15 33 33 H 1.09003 * 109.46866 * 299.99861 * 18 17 15 34 34 H 1.08001 * 122.53963 * 0.04211 * 20 19 18 35 35 H 1.07998 * 125.20164 * 180.02562 * 21 20 19 36 36 H 1.08002 * 125.19887 * 359.95301 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3383 -5.2331 -0.0013 12 8 0.6648 -5.4193 -1.2386 13 8 0.6639 -5.4201 1.2354 14 7 2.5205 -6.3927 -0.0005 15 6 3.3462 -6.5125 1.0580 16 8 3.2231 -5.7713 2.0100 17 6 4.4217 -7.5683 1.0589 18 6 5.2114 -7.4905 2.3671 19 6 6.2872 -8.5458 2.3678 20 6 6.0776 -9.8224 2.8603 21 6 7.1339 -10.6336 2.7869 22 16 8.4852 -9.7778 2.0555 23 6 7.5137 -8.3205 1.8942 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5572 0.8896 27 1 2.8719 -3.6044 0.8895 28 1 2.8720 -3.6043 -0.8904 29 1 2.6187 -6.9857 -0.7618 30 1 5.0944 -7.4022 0.2175 31 1 3.9639 -8.5533 0.9692 32 1 4.5384 -7.6568 3.2082 33 1 5.6691 -6.5054 2.4571 34 1 5.1305 -10.1377 3.2726 35 1 7.1547 -11.6604 3.1210 36 1 7.8563 -7.3872 1.4722 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181261903.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:31 Heat of formation + Delta-G solvation = -119.891382 kcal Electronic energy + Delta-G solvation = -21329.674332 eV Core-core repulsion = 17838.253270 eV Total energy + Delta-G solvation = -3491.421062 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.27350 -39.16144 -38.26969 -37.21216 -35.95692 -35.57016 -33.81077 -33.17403 -30.09602 -27.65822 -26.67479 -23.88760 -23.53275 -22.17979 -20.70440 -19.57220 -19.31730 -18.84240 -18.45020 -18.16218 -17.39465 -16.74152 -16.57489 -16.52799 -16.04790 -15.63245 -15.21947 -14.56268 -14.45918 -14.17396 -13.89859 -13.80352 -13.73509 -13.36164 -13.27067 -13.24164 -12.94369 -12.88002 -12.84496 -12.76051 -12.31651 -12.23759 -12.01278 -11.93103 -11.74449 -11.60621 -11.32843 -11.05285 -10.65283 -9.65776 -9.24218 -8.27638 -6.41883 -0.97927 0.15438 0.83093 1.06701 1.14619 1.39869 1.43864 1.46202 1.52036 1.82953 2.36746 2.59034 3.05165 3.06472 3.32177 3.83604 3.98669 4.02872 4.06267 4.13387 4.27736 4.34360 4.63381 4.68265 4.69590 4.75378 4.91129 5.18842 5.22317 5.22383 5.23799 5.56661 5.63873 5.65805 5.73492 6.03397 6.49892 6.70704 7.28059 8.84627 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.018423 B = 0.002696 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.514948 B =10381.937934 C =11467.560061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.003 4.003 3 Si 0.975 3.025 4 H -0.260 1.260 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.542 4.542 8 H 0.074 0.926 9 C 0.022 3.978 10 C -0.579 4.579 11 S 2.599 3.401 12 O -0.973 6.973 13 O -0.980 6.980 14 N -1.037 6.037 15 C 0.530 3.470 16 O -0.533 6.533 17 C -0.124 4.124 18 C -0.051 4.051 19 C -0.106 4.106 20 C -0.143 4.143 21 C -0.214 4.214 22 S 0.089 5.911 23 C -0.216 4.216 24 H 0.268 0.732 25 H 0.015 0.985 26 H 0.004 0.996 27 H 0.134 0.866 28 H 0.152 0.848 29 H 0.451 0.549 30 H 0.137 0.863 31 H 0.132 0.868 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.152 0.848 35 H 0.182 0.818 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.117 -23.049 0.837 29.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.202 4.202 3 Si 0.799 3.201 4 H -0.184 1.184 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.580 4.580 8 H 0.093 0.907 9 C -0.017 4.017 10 C -0.712 4.712 11 S 2.698 3.302 12 O -0.964 6.964 13 O -0.970 6.970 14 N -0.805 5.805 15 C 0.319 3.681 16 O -0.407 6.407 17 C -0.166 4.166 18 C -0.092 4.092 19 C -0.118 4.118 20 C -0.173 4.173 21 C -0.349 4.349 22 S 0.352 5.648 23 C -0.352 4.352 24 H 0.077 0.923 25 H 0.033 0.967 26 H 0.022 0.978 27 H 0.153 0.847 28 H 0.170 0.830 29 H 0.292 0.708 30 H 0.155 0.845 31 H 0.150 0.850 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.169 0.831 35 H 0.199 0.801 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 18.460 -23.055 1.167 29.558 hybrid contribution -1.053 1.399 0.092 1.753 sum 17.407 -21.656 1.260 27.813 Atomic orbital electron populations 1.70090 1.08040 1.28487 1.50648 1.26129 0.95908 1.03904 0.94260 0.85344 0.78151 0.77175 0.79466 1.18450 1.20792 1.19071 1.21457 0.93949 0.90752 1.51891 0.90735 1.18819 0.93484 0.92798 0.96553 1.30236 1.12826 1.15678 1.12432 1.05340 0.74876 0.76934 0.73039 1.93559 1.71664 1.85546 1.45608 1.93544 1.72005 1.84940 1.46553 1.54868 1.48161 1.49248 1.28209 1.21622 0.81721 0.85135 0.79583 1.90916 1.70546 1.45135 1.34109 1.21897 0.95103 0.97950 1.01617 1.20083 0.94851 0.97221 0.97040 1.18910 0.95146 0.95763 1.02013 1.20338 1.00844 0.92981 1.03099 1.25895 0.96227 1.04989 1.07765 1.84351 1.16169 1.04360 1.59882 1.25760 0.97279 1.03072 1.09054 0.92294 0.96718 0.97801 0.84733 0.83043 0.70816 0.84476 0.84980 0.90729 0.90544 0.83075 0.80094 0.80656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.34 13.29 21.45 0.28 -57.06 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 3 Si 0.98 43.78 29.54 68.60 2.03 45.80 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.54 -30.61 9.11 25.60 0.23 -30.38 16 8 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 9 C 0.02 1.20 4.98 29.85 0.15 1.35 16 10 C -0.58 -22.73 5.82 71.98 0.42 -22.31 16 11 S 2.60 92.33 5.11 -56.49 -0.29 92.05 16 12 O -0.97 -37.70 18.08 -127.65 -2.31 -40.00 16 13 O -0.98 -43.44 17.03 -120.71 -2.06 -45.49 16 14 N -1.04 -22.60 5.60 -173.53 -0.97 -23.58 16 15 C 0.53 11.94 7.57 87.66 0.66 12.60 16 16 O -0.53 -17.37 14.08 13.39 0.19 -17.18 16 17 C -0.12 -1.51 5.68 29.85 0.17 -1.34 16 18 C -0.05 -0.79 4.76 29.85 0.14 -0.65 16 19 C -0.11 -1.46 5.06 -20.92 -0.11 -1.57 16 20 C -0.14 -1.80 9.98 21.22 0.21 -1.59 16 21 C -0.21 -2.41 11.23 66.72 0.75 -1.66 16 22 S 0.09 1.06 23.34 -56.49 -1.32 -0.26 16 23 C -0.22 -2.79 10.98 66.72 0.73 -2.06 16 24 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 25 H 0.01 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.00 0.21 8.14 -2.39 -0.02 0.20 16 27 H 0.13 5.19 7.19 -2.39 -0.02 5.17 16 28 H 0.15 4.88 8.14 -2.39 -0.02 4.86 16 29 H 0.45 5.44 8.79 -96.75 -0.85 4.59 16 30 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 33 H 0.08 1.31 8.08 -2.39 -0.02 1.29 16 34 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 35 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 36 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -82.44 341.09 -0.36 -82.81 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.25 Total: 10.25 kcal Atomic # 6 Polarization: -51.16 SS G_CDS: 3.83 Total: -47.33 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -0.69 Total: -80.63 kcal Atomic # 8 Polarization: -98.50 SS G_CDS: -4.18 Total: -102.68 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 93.39 SS G_CDS: -1.61 Total: 91.79 kcal Total: -82.44 -0.36 -82.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181261903.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.085 kcal (2) G-P(sol) polarization free energy of solvation -82.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds