Wall clock time and date at job start Tue Mar 31 2020 12:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47177 * 2 1 4 4 C 1.50689 * 109.47303 * 239.99421 * 2 1 3 5 5 O 1.21279 * 120.00386 * 240.00037 * 4 2 1 6 6 N 1.34777 * 119.99969 * 60.00028 * 4 2 1 7 7 S 1.65600 * 120.00068 * 179.97438 * 6 4 2 8 8 O 1.42107 * 104.27669 * 181.07262 * 7 6 4 9 9 O 1.42105 * 104.27844 * 308.92798 * 7 6 4 10 10 C 1.81403 * 104.45088 * 65.00348 * 7 6 4 11 11 C 1.52996 * 109.47167 * 179.97438 * 10 7 6 12 12 C 1.50700 * 109.46993 * 179.97438 * 11 10 7 13 13 H 1.08001 * 120.00160 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99766 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00531 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99672 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47197 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47250 * 119.99858 * 16 14 12 19 19 H 1.48506 * 109.46719 * 239.99690 * 16 14 12 20 20 C 1.50707 * 109.46807 * 119.99572 * 2 1 3 21 21 C 1.33388 * 125.19940 * 240.00176 * 20 2 1 22 22 C 1.38433 * 114.91766 * 179.97438 * 21 20 2 23 23 C 1.33389 * 114.92022 * 0.02562 * 22 21 20 24 24 S 1.75879 * 125.20222 * 59.97702 * 20 2 1 25 25 H 1.09000 * 109.47177 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47679 * 300.00592 * 1 2 3 27 27 H 1.08997 * 109.46999 * 60.00397 * 1 2 3 28 28 H 0.97001 * 120.00167 * 359.97438 * 6 4 2 29 29 H 1.08999 * 109.46844 * 299.99913 * 10 7 6 30 30 H 1.08993 * 109.46802 * 59.99761 * 10 7 6 31 31 H 1.08999 * 109.47209 * 299.99740 * 11 10 7 32 32 H 1.09007 * 109.47116 * 59.99777 * 11 10 7 33 33 H 0.96996 * 120.00248 * 180.02562 * 15 14 12 34 34 H 1.08000 * 122.54563 * 359.95533 * 21 20 2 35 35 H 1.07998 * 122.53579 * 180.02562 * 22 21 20 36 36 H 1.07995 * 125.20209 * 180.26467 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 8 2.7296 -1.6965 -1.1190 6 7 1.7068 -0.2501 -2.4545 7 16 2.2593 -1.0305 -3.8065 8 8 1.7480 -0.2631 -4.8877 9 8 3.6588 -1.1535 -3.5928 10 6 1.4609 -2.6583 -3.7477 11 6 1.8965 -3.4841 -4.9598 12 6 1.2337 -4.8366 -4.9106 13 1 0.5686 -5.0827 -4.0960 14 6 1.4772 -5.7602 -5.9049 15 7 2.2875 -5.4608 -6.8965 16 14 0.6550 -7.4365 -5.8443 17 1 -0.2037 -7.5233 -4.6358 18 1 -0.1787 -7.6232 -7.0589 19 1 1.6943 -8.4959 -5.7896 20 6 2.0323 -0.7104 1.2306 21 6 2.8023 -0.1644 2.1730 22 6 3.1394 -1.0122 3.2142 23 6 2.6434 -2.2466 3.1169 24 16 1.6922 -2.3857 1.6440 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.1488 0.5383 -2.5436 29 1 1.7530 -3.1734 -2.8326 30 1 0.3783 -2.5327 -3.7642 31 1 1.6040 -2.9688 -5.8746 32 1 2.9792 -3.6097 -4.9437 33 1 2.4585 -6.1104 -7.5962 34 1 3.1378 0.8611 2.1272 35 1 3.7570 -0.6979 4.0425 36 1 2.7979 -3.0381 3.8353 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181269439.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:38 Heat of formation + Delta-G solvation = -85.294833 kcal Electronic energy + Delta-G solvation = -22082.594944 eV Core-core repulsion = 18592.674101 eV Total energy + Delta-G solvation = -3489.920843 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.41793 -37.90666 -36.72824 -35.63627 -34.77809 -33.91383 -33.81317 -31.18900 -28.79745 -25.68250 -25.31338 -23.78556 -21.73431 -21.30295 -19.63044 -19.41128 -18.17313 -17.45803 -16.93195 -16.48541 -15.95713 -15.62826 -15.23176 -15.02480 -14.66944 -14.52596 -13.92822 -13.44452 -13.30852 -12.91171 -12.68133 -12.55493 -12.45395 -12.33619 -12.00491 -11.84755 -11.78456 -11.74061 -11.63181 -11.09567 -11.00587 -10.88479 -10.74583 -10.42701 -10.36066 -10.21947 -9.71673 -9.17883 -8.83386 -8.50173 -8.46911 -6.12154 -4.17517 0.45533 0.86860 1.54117 1.93166 2.02715 2.54622 2.75915 3.26468 3.33622 3.37351 3.94762 4.10545 4.20401 4.37619 4.55267 4.64752 4.77603 4.92835 4.95716 5.22621 5.23346 5.31081 5.39641 5.41759 5.58211 5.70516 5.71249 5.92127 6.12384 6.31140 6.44471 6.58791 7.27996 7.34585 7.39911 7.81126 8.16606 8.85654 9.47141 10.99030 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.014888 B = 0.003978 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.224453 B = 7036.627814 C = 8252.031329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.039 4.039 3 H 0.123 0.877 4 C 0.532 3.468 5 O -0.473 6.473 6 N -1.057 6.057 7 S 2.563 3.437 8 O -0.954 6.954 9 O -0.937 6.937 10 C -0.575 4.575 11 C 0.029 3.971 12 C -0.518 4.518 13 H 0.063 0.937 14 C 0.058 3.942 15 N -0.890 5.890 16 Si 0.901 3.099 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.172 4.172 21 C -0.132 4.132 22 C -0.140 4.140 23 C -0.219 4.219 24 S 0.146 5.854 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.428 0.572 29 H 0.131 0.869 30 H 0.121 0.879 31 H 0.034 0.966 32 H 0.036 0.964 33 H 0.265 0.735 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.628 13.310 19.506 24.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.064 4.064 3 H 0.141 0.859 4 C 0.317 3.683 5 O -0.343 6.343 6 N -0.818 5.818 7 S 2.664 3.336 8 O -0.945 6.945 9 O -0.927 6.927 10 C -0.709 4.709 11 C -0.010 4.010 12 C -0.558 4.558 13 H 0.081 0.919 14 C -0.145 4.145 15 N -0.528 5.528 16 Si 0.728 3.272 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.290 4.290 21 C -0.163 4.163 22 C -0.170 4.170 23 C -0.355 4.355 24 S 0.412 5.588 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.263 0.737 29 H 0.150 0.850 30 H 0.140 0.860 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.226 11.740 18.168 22.039 hybrid contribution -0.141 0.289 0.887 0.943 sum -4.367 12.028 19.054 22.953 Atomic orbital electron populations 1.21917 0.91034 1.03899 1.03833 1.19892 0.98104 1.00209 0.88226 0.85942 1.20471 0.78793 0.84399 0.84688 1.90951 1.33141 1.24132 1.86029 1.55424 1.62309 1.41694 1.22397 1.06792 0.76047 0.78389 0.72421 1.93592 1.81403 1.69251 1.50214 1.93602 1.28901 1.86744 1.83462 1.30333 1.11946 1.16974 1.11682 1.18997 0.98221 0.95225 0.88544 1.21009 1.28125 0.97576 1.09041 0.91895 1.25062 0.95163 0.99000 0.95227 1.69960 1.35590 1.35571 1.11718 0.86400 0.79269 0.83483 0.78059 1.19605 1.20792 1.20759 1.23905 1.06704 0.98131 1.00255 1.20051 1.00048 1.01521 0.94647 1.20068 1.03246 0.93179 1.00539 1.25736 1.06084 1.01500 1.02198 1.84476 1.49364 1.08855 1.16141 0.91272 0.90258 0.90814 0.73697 0.85039 0.86019 0.94756 0.94581 0.92561 0.84411 0.84442 0.81972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.01 37.16 0.33 -0.66 16 2 C -0.04 -0.36 3.10 -92.93 -0.29 -0.65 16 3 H 0.12 0.77 8.08 -51.93 -0.42 0.35 16 4 C 0.53 7.07 6.86 -10.99 -0.08 6.99 16 5 O -0.47 -8.30 13.35 -11.57 -0.15 -8.45 16 6 N -1.06 -13.14 5.50 31.22 0.17 -12.97 16 7 S 2.56 46.56 5.11 -107.50 -0.55 46.01 16 8 O -0.95 -18.78 18.08 -57.54 -1.04 -19.82 16 9 O -0.94 -20.69 17.04 -64.79 -1.10 -21.79 16 10 C -0.57 -11.40 5.82 37.16 0.22 -11.18 16 11 C 0.03 0.76 4.98 -27.89 -0.14 0.62 16 12 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 13 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 16 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C -0.17 -1.85 4.60 -36.00 -0.17 -2.02 16 21 C -0.13 -1.28 10.01 -41.20 -0.41 -1.69 16 22 C -0.14 -1.31 10.18 -41.20 -0.42 -1.73 16 23 C -0.22 -2.18 11.23 29.04 0.33 -1.85 16 24 S 0.15 1.70 22.18 -107.50 -2.38 -0.68 16 25 H 0.07 0.53 8.00 -51.93 -0.42 0.12 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.35 7.56 -51.93 -0.39 -0.05 16 28 H 0.43 3.39 8.21 -34.47 -0.28 3.11 16 29 H 0.13 2.57 7.19 -51.92 -0.37 2.20 16 30 H 0.12 2.06 8.14 -51.93 -0.42 1.63 16 31 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.04 1.00 8.14 -51.92 -0.42 0.57 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.16 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 337.61 15.07 5.09 5.09 Total: -1.00 -37.43 337.61 -9.68 -47.11 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -4.38 Total: 0.44 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: -1.03 Total: -25.41 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.91 Total: -38.87 kcal Atomic # 8 Polarization: -47.76 SS G_CDS: -2.30 Total: -50.06 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 48.26 SS G_CDS: -2.93 Total: 45.33 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -37.43 -9.68 -47.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181269439.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.189 kcal (2) G-P(sol) polarization free energy of solvation -37.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds