Wall clock time and date at job start Tue Mar 31 2020 12:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47177 * 2 1 4 4 C 1.50689 * 109.47303 * 239.99421 * 2 1 3 5 5 O 1.21279 * 120.00386 * 240.00037 * 4 2 1 6 6 N 1.34777 * 119.99969 * 60.00028 * 4 2 1 7 7 S 1.65600 * 120.00068 * 179.97438 * 6 4 2 8 8 O 1.42107 * 104.27669 * 181.07262 * 7 6 4 9 9 O 1.42105 * 104.27844 * 308.92798 * 7 6 4 10 10 C 1.81403 * 104.45088 * 65.00348 * 7 6 4 11 11 C 1.52996 * 109.47167 * 179.97438 * 10 7 6 12 12 C 1.50700 * 109.46993 * 179.97438 * 11 10 7 13 13 H 1.08001 * 120.00160 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99766 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00531 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99672 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47197 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47250 * 119.99858 * 16 14 12 19 19 H 1.48506 * 109.46719 * 239.99690 * 16 14 12 20 20 C 1.50707 * 109.46807 * 119.99572 * 2 1 3 21 21 C 1.33388 * 125.19940 * 240.00176 * 20 2 1 22 22 C 1.38433 * 114.91766 * 179.97438 * 21 20 2 23 23 C 1.33389 * 114.92022 * 0.02562 * 22 21 20 24 24 S 1.75879 * 125.20222 * 59.97702 * 20 2 1 25 25 H 1.09000 * 109.47177 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47679 * 300.00592 * 1 2 3 27 27 H 1.08997 * 109.46999 * 60.00397 * 1 2 3 28 28 H 0.97001 * 120.00167 * 359.97438 * 6 4 2 29 29 H 1.08999 * 109.46844 * 299.99913 * 10 7 6 30 30 H 1.08993 * 109.46802 * 59.99761 * 10 7 6 31 31 H 1.08999 * 109.47209 * 299.99740 * 11 10 7 32 32 H 1.09007 * 109.47116 * 59.99777 * 11 10 7 33 33 H 0.96996 * 120.00248 * 180.02562 * 15 14 12 34 34 H 1.08000 * 122.54563 * 359.95533 * 21 20 2 35 35 H 1.07998 * 122.53579 * 180.02562 * 22 21 20 36 36 H 1.07995 * 125.20209 * 180.26467 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 8 2.7296 -1.6965 -1.1190 6 7 1.7068 -0.2501 -2.4545 7 16 2.2593 -1.0305 -3.8065 8 8 1.7480 -0.2631 -4.8877 9 8 3.6588 -1.1535 -3.5928 10 6 1.4609 -2.6583 -3.7477 11 6 1.8965 -3.4841 -4.9598 12 6 1.2337 -4.8366 -4.9106 13 1 0.5686 -5.0827 -4.0960 14 6 1.4772 -5.7602 -5.9049 15 7 2.2875 -5.4608 -6.8965 16 14 0.6550 -7.4365 -5.8443 17 1 -0.2037 -7.5233 -4.6358 18 1 -0.1787 -7.6232 -7.0589 19 1 1.6943 -8.4959 -5.7896 20 6 2.0323 -0.7104 1.2306 21 6 2.8023 -0.1644 2.1730 22 6 3.1394 -1.0122 3.2142 23 6 2.6434 -2.2466 3.1169 24 16 1.6922 -2.3857 1.6440 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.1488 0.5383 -2.5436 29 1 1.7530 -3.1734 -2.8326 30 1 0.3783 -2.5327 -3.7642 31 1 1.6040 -2.9688 -5.8746 32 1 2.9792 -3.6097 -4.9437 33 1 2.4585 -6.1104 -7.5962 34 1 3.1378 0.8611 2.1272 35 1 3.7570 -0.6979 4.0425 36 1 2.7979 -3.0381 3.8353 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181269439.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:37 Heat of formation + Delta-G solvation = -112.949152 kcal Electronic energy + Delta-G solvation = -22083.794125 eV Core-core repulsion = 18592.674101 eV Total energy + Delta-G solvation = -3491.120024 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.48941 -38.68613 -38.29296 -37.25263 -36.00833 -35.81421 -34.64236 -33.19554 -29.48277 -27.67696 -26.08665 -24.65475 -23.63855 -22.28450 -20.82552 -20.27571 -19.49586 -18.88773 -18.30677 -17.72955 -17.34635 -16.76267 -16.56728 -16.50072 -16.20480 -15.69859 -15.22307 -14.60459 -14.49335 -14.15302 -13.81497 -13.71248 -13.49420 -13.40286 -13.36981 -13.26544 -13.13697 -12.98354 -12.85623 -12.62910 -12.47278 -12.34050 -12.23833 -12.02929 -11.75519 -11.53126 -11.29931 -11.06855 -10.67568 -9.58737 -9.30034 -8.28607 -6.42571 -1.03739 0.09937 0.77739 0.96127 1.18054 1.39186 1.40463 1.40602 1.53741 1.89692 2.35715 2.53986 3.00207 3.05065 3.21918 3.47212 3.83541 3.98533 4.02000 4.02967 4.25154 4.31444 4.66031 4.66862 4.72934 4.84630 4.86116 5.20397 5.20814 5.21772 5.26423 5.39527 5.60983 5.65167 5.67655 6.02390 6.38788 6.70057 7.27472 8.84089 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.014888 B = 0.003978 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.224453 B = 7036.627814 C = 8252.031329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.031 4.031 3 H 0.162 0.838 4 C 0.529 3.471 5 O -0.518 6.518 6 N -1.033 6.033 7 S 2.598 3.402 8 O -0.969 6.969 9 O -0.979 6.979 10 C -0.579 4.579 11 C 0.023 3.977 12 C -0.539 4.539 13 H 0.073 0.927 14 C -0.002 4.002 15 N -0.933 5.933 16 Si 0.975 3.025 17 H -0.257 1.257 18 H -0.273 1.273 19 H -0.279 1.279 20 C -0.183 4.183 21 C -0.131 4.131 22 C -0.144 4.144 23 C -0.221 4.221 24 S 0.080 5.920 25 H 0.053 0.947 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.451 0.549 29 H 0.132 0.868 30 H 0.152 0.848 31 H 0.016 0.984 32 H 0.003 0.997 33 H 0.268 0.732 34 H 0.166 0.834 35 H 0.163 0.837 36 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.016 14.735 21.459 26.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.055 4.055 3 H 0.179 0.821 4 C 0.315 3.685 5 O -0.390 6.390 6 N -0.801 5.801 7 S 2.697 3.303 8 O -0.959 6.959 9 O -0.969 6.969 10 C -0.712 4.712 11 C -0.016 4.016 12 C -0.578 4.578 13 H 0.091 0.909 14 C -0.201 4.201 15 N -0.572 5.572 16 Si 0.798 3.202 17 H -0.181 1.181 18 H -0.199 1.199 19 H -0.205 1.205 20 C -0.301 4.301 21 C -0.162 4.162 22 C -0.174 4.174 23 C -0.357 4.357 24 S 0.344 5.656 25 H 0.072 0.928 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.292 0.708 29 H 0.150 0.850 30 H 0.170 0.830 31 H 0.034 0.966 32 H 0.022 0.978 33 H 0.077 0.923 34 H 0.183 0.817 35 H 0.181 0.819 36 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -5.648 13.186 20.115 24.706 hybrid contribution 0.329 -0.056 0.381 0.507 sum -5.319 13.130 20.496 24.916 Atomic orbital electron populations 1.22011 0.88956 1.03710 1.06084 1.20071 0.99649 1.00977 0.84829 0.82090 1.21406 0.77662 0.83852 0.85532 1.90947 1.35296 1.26349 1.86405 1.54820 1.62483 1.42053 1.20720 1.05408 0.74738 0.77322 0.72812 1.93566 1.81401 1.69021 1.51938 1.93551 1.31666 1.87127 1.84523 1.30233 1.14174 1.18034 1.08710 1.18828 0.96236 0.95967 0.90590 1.21490 1.28301 0.98677 1.09358 0.90858 1.26101 0.95720 1.03508 0.94726 1.70096 1.37184 1.37255 1.12663 0.85257 0.78317 0.77872 0.78759 1.18109 1.19871 1.20455 1.24132 1.07575 0.97076 1.01300 1.20455 0.98849 1.02800 0.94109 1.20462 1.02938 0.92831 1.01173 1.25982 1.05733 1.02490 1.01485 1.84680 1.51159 1.11366 1.18351 0.92754 0.88230 0.88382 0.70776 0.84992 0.82975 0.96551 0.97823 0.92282 0.81673 0.81936 0.80353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.01 71.98 0.65 -0.86 16 2 C -0.03 -0.47 3.10 -12.29 -0.04 -0.51 16 3 H 0.16 1.24 8.08 -2.39 -0.02 1.22 16 4 C 0.53 13.17 6.86 87.65 0.60 13.77 16 5 O -0.52 -18.14 13.35 13.35 0.18 -17.96 16 6 N -1.03 -23.65 5.50 -173.54 -0.95 -24.60 16 7 S 2.60 94.08 5.11 -56.49 -0.29 93.79 16 8 O -0.97 -37.59 18.08 -127.65 -2.31 -39.90 16 9 O -0.98 -44.10 17.04 -120.72 -2.06 -46.15 16 10 C -0.58 -23.23 5.82 71.98 0.42 -22.81 16 11 C 0.02 1.23 4.98 29.85 0.15 1.38 16 12 C -0.54 -30.71 9.11 25.60 0.23 -30.48 16 13 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16 14 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 15 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 16 Si 0.97 44.10 29.54 68.60 2.03 46.12 16 17 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 C -0.18 -3.59 4.60 24.59 0.11 -3.47 16 21 C -0.13 -2.18 10.01 21.22 0.21 -1.97 16 22 C -0.14 -2.37 10.18 21.22 0.22 -2.15 16 23 C -0.22 -4.15 11.23 66.72 0.75 -3.41 16 24 S 0.08 1.85 22.18 -56.49 -1.25 0.59 16 25 H 0.05 0.73 8.00 -2.39 -0.02 0.72 16 26 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.10 0.50 7.56 -2.39 -0.02 0.48 16 28 H 0.45 5.67 8.21 -96.75 -0.79 4.88 16 29 H 0.13 5.29 7.19 -2.39 -0.02 5.27 16 30 H 0.15 5.02 8.14 -2.39 -0.02 5.00 16 31 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 33 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 34 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 35 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 36 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -84.44 337.61 -0.29 -84.73 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 0.31 Total: 10.61 kcal Atomic # 6 Polarization: -53.92 SS G_CDS: 3.77 Total: -50.16 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -0.67 Total: -81.68 kcal Atomic # 8 Polarization: -99.82 SS G_CDS: -4.19 Total: -104.01 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: 95.93 SS G_CDS: -1.54 Total: 94.38 kcal Total: -84.44 -0.29 -84.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181269439.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.219 kcal (2) G-P(sol) polarization free energy of solvation -84.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds