Wall clock time and date at job start Tue Mar 31 2020 12:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.50700 * 109.47092 * 120.00550 * 2 1 3 5 5 O 1.21283 * 119.99803 * 119.99700 * 4 2 1 6 6 N 1.34777 * 119.99675 * 300.27576 * 4 2 1 7 7 S 1.65595 * 119.99670 * 179.72791 * 6 4 2 8 8 O 1.42102 * 104.27892 * 181.06702 * 7 6 4 9 9 O 1.42108 * 104.27757 * 308.92500 * 7 6 4 10 10 C 1.81400 * 104.45302 * 64.99604 * 7 6 4 11 11 C 1.52997 * 109.47115 * 180.02562 * 10 7 6 12 12 C 1.50703 * 109.46945 * 179.97438 * 11 10 7 13 13 H 1.07996 * 120.00368 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99993 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00165 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99810 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47015 * 90.00534 * 16 14 12 18 18 H 1.48504 * 109.46878 * 210.00301 * 16 14 12 19 19 H 1.48493 * 109.47320 * 330.00173 * 16 14 12 20 20 C 1.50703 * 109.46747 * 240.00334 * 2 1 3 21 21 C 1.33386 * 125.20196 * 120.00529 * 20 2 1 22 22 C 1.38420 * 114.92399 * 179.97438 * 21 20 2 23 23 C 1.33388 * 114.91890 * 0.02562 * 22 21 20 24 24 S 1.75882 * 125.20367 * 299.69442 * 20 2 1 25 25 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47239 * 299.99568 * 1 2 3 27 27 H 1.09005 * 109.47323 * 59.99789 * 1 2 3 28 28 H 0.97000 * 119.99894 * 359.71837 * 6 4 2 29 29 H 1.09000 * 109.47324 * 299.99935 * 10 7 6 30 30 H 1.08998 * 109.46894 * 60.00134 * 10 7 6 31 31 H 1.09001 * 109.47683 * 299.99626 * 11 10 7 32 32 H 1.08998 * 109.47664 * 59.99962 * 11 10 7 33 33 H 0.96999 * 120.00170 * 179.97438 * 15 14 12 34 34 H 1.08004 * 122.54070 * 359.97438 * 21 20 2 35 35 H 1.08004 * 122.54162 * 180.02562 * 22 21 20 36 36 H 1.08002 * 125.20488 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1190 6 7 1.7021 -0.2534 2.4545 7 16 2.2485 -1.0381 3.8065 8 8 1.6914 -0.3031 4.8875 9 8 1.8987 -2.3980 3.5878 10 6 4.0496 -0.8279 3.7551 11 6 4.6784 -1.5183 4.9670 12 6 6.1747 -1.3442 4.9239 13 1 6.6314 -0.7957 4.1135 14 6 6.9606 -1.8853 5.9193 15 7 8.2664 -1.7330 5.8820 16 14 6.1706 -2.8336 7.3214 17 1 6.0775 -4.2701 6.9569 18 1 6.9972 -2.6862 8.5463 19 1 4.8091 -2.2982 7.5758 20 6 2.0322 -0.7104 -1.2306 21 6 2.8024 -0.1646 -2.1730 22 6 3.1403 -1.0125 -3.2135 23 6 2.6441 -2.2469 -3.1164 24 16 1.6989 -2.3881 -1.6398 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.1445 0.5353 2.5435 29 1 4.4413 -1.2726 2.8403 30 1 4.2921 0.2346 3.7754 31 1 4.2868 -1.0740 5.8821 32 1 4.4359 -2.5808 4.9464 33 1 8.8193 -2.1133 6.5824 34 1 3.1370 0.8613 -2.1276 35 1 3.7589 -0.6985 -4.0414 36 1 2.8022 -3.0396 -3.8326 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181269453.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:40 Heat of formation + Delta-G solvation = -108.722848 kcal Electronic energy + Delta-G solvation = -22087.435735 eV Core-core repulsion = 18596.498978 eV Total energy + Delta-G solvation = -3490.936758 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.49839 -38.69344 -38.30893 -37.27630 -36.02299 -35.81324 -34.65784 -33.53425 -29.49617 -27.97893 -26.10260 -24.64736 -23.26727 -22.27889 -20.84805 -20.27020 -19.62867 -19.12936 -18.41750 -17.73711 -17.39580 -16.75585 -16.57180 -16.40895 -16.18283 -15.69070 -15.36435 -14.85867 -14.61019 -14.14472 -13.85605 -13.75164 -13.50390 -13.42147 -13.39447 -13.28970 -13.13843 -13.12409 -13.05093 -12.64617 -12.47913 -12.33538 -12.13525 -11.95963 -11.72898 -11.54338 -11.32299 -11.18205 -10.86658 -9.59340 -9.30700 -8.38543 -6.45054 -1.06532 0.09006 0.77207 0.93873 1.18322 1.31492 1.32408 1.36056 1.42684 1.89374 2.28030 2.48763 2.95057 2.97459 3.21491 3.46211 3.76957 3.94451 3.97459 3.98864 4.24857 4.31295 4.49219 4.65270 4.72616 4.82180 4.84048 4.99067 5.03557 5.19630 5.23877 5.39247 5.43262 5.60254 5.66343 6.13636 6.37618 6.60307 7.19110 8.77178 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.017775 B = 0.003798 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.870586 B = 7371.483890 C = 8244.902439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.032 4.032 3 H 0.167 0.833 4 C 0.528 3.472 5 O -0.517 6.517 6 N -1.033 6.033 7 S 2.601 3.399 8 O -0.963 6.963 9 O -0.972 6.972 10 C -0.580 4.580 11 C -0.015 4.015 12 C -0.530 4.530 13 H 0.047 0.953 14 C 0.014 3.986 15 N -0.939 5.939 16 Si 0.926 3.074 17 H -0.264 1.264 18 H -0.270 1.270 19 H -0.245 1.245 20 C -0.183 4.183 21 C -0.130 4.130 22 C -0.145 4.145 23 C -0.221 4.221 24 S 0.077 5.923 25 H 0.049 0.951 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.452 0.548 29 H 0.130 0.870 30 H 0.151 0.849 31 H 0.042 0.958 32 H 0.028 0.972 33 H 0.271 0.729 34 H 0.167 0.833 35 H 0.162 0.838 36 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.503 7.874 -17.878 26.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.056 4.056 3 H 0.184 0.816 4 C 0.315 3.685 5 O -0.389 6.389 6 N -0.801 5.801 7 S 2.699 3.301 8 O -0.953 6.953 9 O -0.962 6.962 10 C -0.712 4.712 11 C -0.054 4.054 12 C -0.569 4.569 13 H 0.065 0.935 14 C -0.184 4.184 15 N -0.579 5.579 16 Si 0.748 3.252 17 H -0.189 1.189 18 H -0.195 1.195 19 H -0.168 1.168 20 C -0.301 4.301 21 C -0.160 4.160 22 C -0.175 4.175 23 C -0.356 4.356 24 S 0.342 5.658 25 H 0.068 0.932 26 H 0.115 0.885 27 H 0.118 0.882 28 H 0.293 0.707 29 H 0.149 0.851 30 H 0.169 0.831 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.184 0.816 35 H 0.180 0.820 36 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -19.255 5.478 -16.593 26.002 hybrid contribution 1.529 0.913 -0.226 1.795 sum -17.726 6.391 -16.819 25.257 Atomic orbital electron populations 1.21991 0.89296 1.03371 1.05995 1.20092 0.99485 1.01188 0.84873 0.81580 1.21388 0.78056 0.83444 0.85589 1.90953 1.36150 1.25399 1.86405 1.54799 1.60825 1.43789 1.20691 1.05348 0.78129 0.73727 0.72894 1.93583 1.77031 1.72963 1.51756 1.93570 1.82387 1.35821 1.84410 1.30177 1.20903 1.11809 1.08321 1.19376 0.96934 0.96172 0.92920 1.21120 0.90329 1.35544 1.09858 0.93496 1.25882 0.95217 0.96639 1.00690 1.70006 1.05495 1.46697 1.35665 0.86009 0.80159 0.79903 0.79086 1.18922 1.19523 1.16819 1.24123 1.07662 0.96913 1.01395 1.20457 0.98687 1.02832 0.94067 1.20473 1.02863 0.92941 1.01231 1.25985 1.05796 1.02448 1.01418 1.84670 1.51688 1.11392 1.18036 0.93227 0.88546 0.88151 0.70701 0.85141 0.83118 0.93969 0.95422 0.92020 0.81578 0.82045 0.80360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.01 71.98 0.65 -0.85 16 2 C -0.03 -0.47 3.10 -12.29 -0.04 -0.50 16 3 H 0.17 1.07 8.08 -2.39 -0.02 1.05 16 4 C 0.53 12.57 6.86 87.66 0.60 13.17 16 5 O -0.52 -17.52 13.34 13.34 0.18 -17.34 16 6 N -1.03 -21.73 5.49 -173.53 -0.95 -22.68 16 7 S 2.60 85.15 5.11 -56.49 -0.29 84.86 16 8 O -0.96 -33.28 18.08 -127.65 -2.31 -35.59 16 9 O -0.97 -39.60 17.04 -120.72 -2.06 -41.65 16 10 C -0.58 -21.86 5.82 71.98 0.42 -21.44 16 11 C -0.01 -0.72 4.05 29.85 0.12 -0.59 16 12 C -0.53 -30.67 9.66 25.60 0.25 -30.43 16 13 H 0.05 2.91 7.99 -2.91 -0.02 2.89 16 14 C 0.01 0.85 5.47 84.66 0.46 1.31 16 15 N -0.94 -58.52 13.96 21.45 0.30 -58.22 16 16 Si 0.93 44.31 27.47 68.60 1.88 46.19 16 17 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 19 H -0.24 -10.93 6.54 99.48 0.65 -10.28 16 20 C -0.18 -3.55 4.61 24.59 0.11 -3.44 16 21 C -0.13 -2.16 10.01 21.21 0.21 -1.94 16 22 C -0.14 -2.44 10.18 21.22 0.22 -2.22 16 23 C -0.22 -4.17 11.23 66.72 0.75 -3.42 16 24 S 0.08 1.79 22.17 -56.49 -1.25 0.54 16 25 H 0.05 0.70 8.01 -2.38 -0.02 0.68 16 26 H 0.10 0.49 7.55 -2.38 -0.02 0.48 16 27 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.45 4.89 8.20 -96.75 -0.79 4.10 16 29 H 0.13 5.09 7.19 -2.39 -0.02 5.07 16 30 H 0.15 4.81 8.14 -2.39 -0.02 4.79 16 31 H 0.04 1.94 7.20 -2.39 -0.02 1.92 16 32 H 0.03 1.33 7.57 -2.39 -0.02 1.31 16 33 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 34 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 35 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 36 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -83.33 333.98 -0.48 -83.81 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.26 Total: 10.45 kcal Atomic # 6 Polarization: -54.12 SS G_CDS: 3.75 Total: -50.37 kcal Atomic # 7 Polarization: -80.24 SS G_CDS: -0.65 Total: -80.90 kcal Atomic # 8 Polarization: -90.40 SS G_CDS: -4.19 Total: -94.58 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.88 Total: 46.19 kcal Atomic # 16 Polarization: 86.94 SS G_CDS: -1.54 Total: 85.40 kcal Total: -83.33 -0.48 -83.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181269453.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.913 kcal (2) G-P(sol) polarization free energy of solvation -83.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds