Wall clock time and date at job start Tue Mar 31 2020 12:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47239 * 2 1 4 4 C 1.33818 * 124.52635 * 89.99815 * 3 2 1 5 5 C 1.37468 * 115.10153 * 179.97438 * 4 3 2 6 6 C 1.36648 * 113.29981 * 0.02562 * 5 4 3 7 7 C 1.46588 * 125.46001 * 180.02562 * 6 5 4 8 8 O 1.21700 * 119.99670 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99843 * 179.97438 * 7 6 5 10 10 S 1.65600 * 119.99726 * 179.97438 * 9 7 6 11 11 O 1.42106 * 104.27448 * 181.07266 * 10 9 7 12 12 O 1.42102 * 104.27795 * 308.93117 * 10 9 7 13 13 C 1.81401 * 104.44741 * 65.00410 * 10 9 7 14 14 C 1.52999 * 109.46849 * 179.97438 * 13 10 9 15 15 C 1.50703 * 109.47051 * 179.97438 * 14 13 10 16 16 H 1.08005 * 120.00113 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00308 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00274 * 179.97438 * 17 15 14 19 19 Si 1.86807 * 119.99852 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.46944 * 89.99525 * 19 17 15 21 21 H 1.48494 * 109.46831 * 209.99863 * 19 17 15 22 22 H 1.48498 * 109.46868 * 329.99603 * 19 17 15 23 23 S 1.70616 * 124.52099 * 269.69826 * 3 2 1 24 24 H 1.09001 * 109.47002 * 60.00070 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00336 * 1 2 3 27 27 H 1.09001 * 109.46998 * 119.99373 * 2 1 3 28 28 H 1.09000 * 109.47050 * 239.99664 * 2 1 3 29 29 H 1.08001 * 122.44644 * 359.97438 * 4 3 2 30 30 H 1.07994 * 123.35265 * 179.97438 * 5 4 3 31 31 H 0.97004 * 119.99845 * 0.02562 * 9 7 6 32 32 H 1.08995 * 109.47247 * 300.00009 * 13 10 9 33 33 H 1.09001 * 109.47213 * 59.99717 * 13 10 9 34 34 H 1.08995 * 109.47749 * 299.99729 * 14 13 10 35 35 H 1.09001 * 109.46729 * 60.00421 * 14 13 10 36 36 H 0.96995 * 120.00101 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2852 2.1359 1.1025 5 6 2.7378 3.4142 0.8774 6 6 2.8470 3.7232 -0.4492 7 6 3.3024 5.0080 -0.9885 8 8 3.6208 5.9068 -0.2323 9 7 3.3684 5.1938 -2.3217 10 16 3.8823 6.6454 -2.9309 11 8 3.7980 6.4835 -4.3402 12 8 3.0872 7.6101 -2.2554 13 6 5.6146 6.7684 -2.4068 14 6 6.2090 8.0833 -2.9154 15 6 7.6480 8.1859 -2.4795 16 1 8.0940 7.3924 -1.8982 17 6 8.3954 9.2922 -2.8236 18 7 9.6510 9.3819 -2.4427 19 14 7.6242 10.6643 -3.8296 20 1 7.0175 11.6664 -2.9168 21 1 8.6689 11.3178 -4.6581 22 1 6.5730 10.0994 -4.7134 23 16 2.3617 2.3299 -1.4057 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5137 0.8901 28 1 1.8934 -0.5139 -0.8900 29 1 2.1440 1.7377 2.0964 30 1 2.9820 4.1058 1.6700 31 1 3.1143 4.4774 -2.9244 32 1 5.6676 6.7422 -1.3185 33 1 6.1790 5.9317 -2.8184 34 1 6.1561 8.1092 -4.0038 35 1 5.6447 8.9202 -2.5041 36 1 10.1767 10.1603 -2.6845 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181292039.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:51 Heat of formation + Delta-G solvation = -115.492628 kcal Electronic energy + Delta-G solvation = -21504.067201 eV Core-core repulsion = 18012.836884 eV Total energy + Delta-G solvation = -3491.230318 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.33630 -39.01404 -38.37663 -37.33726 -36.00811 -35.76306 -34.68317 -33.54252 -30.01381 -27.99022 -26.56817 -23.89415 -23.25235 -23.14145 -21.16669 -20.54417 -19.54417 -19.26090 -18.69062 -17.46069 -17.31361 -16.80051 -16.58767 -16.44990 -16.27452 -15.44404 -15.37666 -14.98837 -14.85637 -14.51525 -14.11355 -13.87728 -13.79020 -13.47616 -13.35733 -13.29054 -13.13832 -13.07330 -12.90125 -12.46624 -12.38995 -12.21537 -12.13580 -11.98363 -11.74673 -11.71947 -11.66324 -11.26106 -10.85947 -9.80223 -9.60719 -8.37784 -6.44515 -1.13601 -0.71594 0.34030 0.79398 1.05369 1.23783 1.32870 1.33451 1.44005 1.81698 2.28937 2.42743 2.91277 2.95795 3.19634 3.64292 3.71397 3.85469 3.93861 4.11931 4.27545 4.40475 4.45654 4.48871 4.78806 4.89574 4.98294 5.00171 5.03812 5.09556 5.17085 5.32552 5.39685 5.43324 5.48183 6.14076 6.21393 6.60812 7.19497 8.77876 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.028989 B = 0.003037 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.635534 B = 9218.232230 C = 9595.599679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.059 4.059 3 C -0.169 4.169 4 C -0.164 4.164 5 C -0.033 4.033 6 C -0.322 4.322 7 C 0.612 3.388 8 O -0.521 6.521 9 N -1.040 6.040 10 S 2.602 3.398 11 O -0.958 6.958 12 O -0.967 6.967 13 C -0.577 4.577 14 C -0.015 4.015 15 C -0.530 4.530 16 H 0.047 0.953 17 C 0.013 3.987 18 N -0.939 5.939 19 Si 0.928 3.072 20 H -0.263 1.263 21 H -0.271 1.271 22 H -0.244 1.244 23 S 0.241 5.759 24 H 0.053 0.947 25 H 0.078 0.922 26 H 0.057 0.943 27 H 0.103 0.897 28 H 0.089 0.911 29 H 0.171 0.829 30 H 0.154 0.846 31 H 0.442 0.558 32 H 0.133 0.867 33 H 0.151 0.849 34 H 0.044 0.956 35 H 0.031 0.969 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.027 -23.396 3.544 31.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.098 4.098 3 C -0.289 4.289 4 C -0.194 4.194 5 C -0.068 4.068 6 C -0.443 4.443 7 C 0.402 3.598 8 O -0.397 6.397 9 N -0.805 5.805 10 S 2.701 3.299 11 O -0.948 6.948 12 O -0.957 6.957 13 C -0.710 4.710 14 C -0.054 4.054 15 C -0.569 4.569 16 H 0.065 0.935 17 C -0.185 4.185 18 N -0.579 5.579 19 Si 0.750 3.250 20 H -0.188 1.188 21 H -0.196 1.196 22 H -0.168 1.168 23 S 0.510 5.490 24 H 0.072 0.928 25 H 0.097 0.903 26 H 0.076 0.924 27 H 0.121 0.879 28 H 0.108 0.892 29 H 0.188 0.812 30 H 0.172 0.828 31 H 0.281 0.719 32 H 0.152 0.848 33 H 0.169 0.831 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.321 -22.363 1.996 30.283 hybrid contribution 0.814 0.697 1.393 1.757 sum -19.507 -21.666 3.389 29.350 Atomic orbital electron populations 1.21823 0.93360 1.03220 1.02358 1.20370 0.96781 0.87458 1.05225 1.24820 1.03886 1.03071 0.97127 1.20163 1.04906 0.93095 1.01217 1.21078 0.93872 0.97182 0.94666 1.24234 1.21341 0.99119 0.99626 1.17256 0.74752 0.87202 0.80588 1.91016 1.47538 1.43464 1.57675 1.54830 1.74403 1.36312 1.14970 1.05404 0.78214 0.72797 0.73519 1.93587 1.87403 1.84681 1.29156 1.93569 1.67068 1.59344 1.75706 1.30168 1.19559 1.08460 1.12825 1.19396 0.96896 0.91446 0.97645 1.21110 0.94897 1.05908 1.34958 0.93477 1.25899 0.95169 1.00767 0.96709 1.70008 1.09261 1.31088 1.47506 0.85987 0.79495 0.79590 0.79952 1.18814 1.19588 1.16766 1.82803 1.58781 1.00227 1.07146 0.92805 0.90286 0.92358 0.87917 0.89240 0.81157 0.82825 0.71875 0.84828 0.83069 0.93788 0.95087 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.90 71.98 0.71 -0.13 16 2 C -0.06 -0.36 6.36 29.85 0.19 -0.17 16 3 C -0.17 -1.94 5.53 24.68 0.14 -1.81 16 4 C -0.16 -2.16 9.99 21.08 0.21 -1.95 16 5 C -0.03 -0.63 10.01 21.72 0.22 -0.41 16 6 C -0.32 -7.00 6.45 24.08 0.16 -6.85 16 7 C 0.61 17.67 7.52 86.42 0.65 18.32 16 8 O -0.52 -19.17 14.94 12.02 0.18 -18.99 16 9 N -1.04 -27.25 5.60 -176.45 -0.99 -28.24 16 10 S 2.60 90.76 5.11 -56.49 -0.29 90.47 16 11 O -0.96 -34.67 18.08 -127.65 -2.31 -36.98 16 12 O -0.97 -40.72 17.04 -120.72 -2.06 -42.78 16 13 C -0.58 -22.47 5.82 71.98 0.42 -22.05 16 14 C -0.01 -0.71 4.05 29.85 0.12 -0.59 16 15 C -0.53 -30.83 9.66 25.60 0.25 -30.58 16 16 H 0.05 2.94 7.99 -2.91 -0.02 2.92 16 17 C 0.01 0.78 5.47 84.65 0.46 1.24 16 18 N -0.94 -58.68 13.96 21.45 0.30 -58.38 16 19 Si 0.93 44.37 27.47 68.60 1.88 46.25 16 20 H -0.26 -12.22 7.11 99.48 0.71 -11.52 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.24 -10.90 6.54 99.48 0.65 -10.25 16 23 S 0.24 3.35 22.10 -56.49 -1.25 2.10 16 24 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 25 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 26 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.17 1.39 8.06 -2.91 -0.02 1.36 16 30 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 31 H 0.44 8.06 7.90 -96.74 -0.76 7.30 16 32 H 0.13 5.33 7.19 -2.39 -0.02 5.31 16 33 H 0.15 5.05 8.14 -2.39 -0.02 5.03 16 34 H 0.04 2.03 7.20 -2.39 -0.02 2.01 16 35 H 0.03 1.49 7.57 -2.39 -0.02 1.47 16 36 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -79.33 336.94 -0.71 -80.04 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.29 Total: 11.47 kcal Atomic # 6 Polarization: -48.49 SS G_CDS: 3.52 Total: -44.97 kcal Atomic # 7 Polarization: -85.92 SS G_CDS: -0.69 Total: -86.61 kcal Atomic # 8 Polarization: -94.57 SS G_CDS: -4.18 Total: -98.75 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.88 Total: 46.25 kcal Atomic # 16 Polarization: 94.11 SS G_CDS: -1.54 Total: 92.57 kcal Total: -79.33 -0.71 -80.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181292039.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.452 kcal (2) G-P(sol) polarization free energy of solvation -79.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds