Wall clock time and date at job start Tue Mar 31 2020 12:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86795 * 119.99880 * 2 1 4 4 H 1.48501 * 109.47211 * 269.99790 * 3 2 1 5 5 H 1.48499 * 109.47059 * 30.00240 * 3 2 1 6 6 H 1.48508 * 109.47117 * 150.00257 * 3 2 1 7 7 C 1.40171 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99493 * 179.97438 * 7 2 1 9 9 C 1.41768 * 119.99986 * 359.97438 * 7 2 1 10 10 O 1.21659 * 120.00117 * 0.02562 * 9 7 2 11 11 O 1.34929 * 119.99629 * 179.97438 * 9 7 2 12 12 C 1.35861 * 117.99654 * 175.00462 * 11 9 7 13 13 C 1.38869 * 119.99290 * 254.84767 * 12 11 9 14 14 C 1.37996 * 120.01377 * 179.76583 * 13 12 11 15 15 C 1.38969 * 119.98460 * 0.51735 * 14 13 12 16 16 N 1.39884 * 120.00762 * 179.71944 * 15 14 13 17 17 C 1.34776 * 120.00139 * 215.13684 * 16 15 14 18 18 O 1.21658 * 119.99622 * 355.41171 * 17 16 15 19 19 C 1.47161 * 120.00286 * 175.41920 * 17 16 15 20 20 C 1.44433 * 123.46564 * 180.02562 * 19 17 16 21 21 C 1.32762 * 113.08467 * 179.97438 * 20 19 17 22 22 S 1.75497 * 110.58317 * 359.97438 * 21 20 19 23 23 C 1.36028 * 123.46083 * 359.69573 * 19 17 16 24 24 C 1.38963 * 119.98249 * 359.73841 * 15 14 13 25 25 C 1.37993 * 119.98784 * 0.02562 * 24 15 14 26 26 H 0.96992 * 120.00269 * 0.02562 * 1 2 3 27 27 H 1.08000 * 119.99342 * 0.02562 * 13 12 11 28 28 H 1.07998 * 120.01051 * 180.25730 * 14 13 12 29 29 H 0.96999 * 119.99907 * 35.13463 * 16 15 14 30 30 H 1.07995 * 123.45400 * 359.97438 * 20 19 17 31 31 H 1.08006 * 124.70841 * 179.97438 * 21 20 19 32 32 H 1.07999 * 124.59526 * 0.02713 * 23 19 17 33 33 H 1.07997 * 120.00800 * 179.97438 * 24 15 14 34 34 H 1.08000 * 119.99611 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.4877 2.0464 -1.4001 5 1 1.4376 2.6526 0.7001 6 1 3.5378 1.4401 0.7000 7 6 2.0071 -1.2139 -0.0005 8 1 3.0871 -1.2139 -0.0010 9 6 1.2982 -2.4417 -0.0005 10 8 0.0816 -2.4416 -0.0005 11 8 1.9729 -3.6101 -0.0016 12 6 1.2570 -4.7601 0.1029 13 6 1.2457 -5.4645 1.2996 14 6 0.5147 -6.6300 1.4077 15 6 -0.2015 -7.1044 0.3154 16 7 -0.9379 -8.2889 0.4227 17 6 -1.0339 -9.1207 -0.6334 18 8 -0.5513 -8.8027 -1.7039 19 6 -1.7227 -10.4134 -0.4917 20 6 -1.8686 -11.3608 -1.5721 21 6 -2.5244 -12.4590 -1.2164 22 16 -2.9942 -12.3774 0.4725 23 6 -2.2819 -10.8417 0.6720 24 6 -0.1857 -6.4020 -0.8835 25 6 0.5416 -5.2341 -0.9891 26 1 -0.4850 0.8399 -0.0004 27 1 1.8057 -5.0979 2.1472 28 1 0.5027 -7.1755 2.3397 29 1 -1.3793 -8.5116 1.2572 30 1 -1.4836 -11.1930 -2.5670 31 1 -2.7391 -13.2876 -1.8751 32 1 -2.2771 -10.2834 1.5966 33 1 -0.7418 -6.7706 -1.7328 34 1 0.5544 -4.6883 -1.9210 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185185491.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:01 Heat of formation + Delta-G solvation = -52.034035 kcal Electronic energy + Delta-G solvation = -22206.093172 eV Core-core repulsion = 18582.170674 eV Total energy + Delta-G solvation = -3623.922498 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.055 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.58053 -39.34861 -37.77843 -36.81010 -35.16984 -34.10384 -32.67786 -30.55917 -30.49060 -28.45504 -26.91587 -25.28273 -23.02604 -22.61170 -21.47047 -20.32020 -19.43167 -18.63485 -17.53680 -17.32715 -17.01064 -16.40520 -15.58327 -15.35194 -15.14398 -14.63558 -14.19350 -13.99902 -13.65912 -13.41307 -13.23945 -13.14622 -12.89462 -12.76810 -12.71556 -12.29896 -11.87381 -11.51694 -11.38300 -11.26403 -10.96115 -10.66608 -10.35988 -10.02216 -9.95609 -9.45494 -9.37569 -8.97777 -8.84244 -8.50163 -8.23646 -7.49700 -6.55261 -5.08351 0.36403 1.13961 1.50162 1.52006 1.85431 1.88136 2.98231 3.01496 3.08206 3.13426 3.17187 3.86487 4.12608 4.18626 4.34835 4.65527 4.85665 4.90568 4.98571 5.27948 5.36961 5.43221 5.48898 5.68786 5.81391 5.83097 5.87895 5.98954 6.34535 6.49027 6.61179 6.79776 7.12263 7.14666 7.24251 7.37896 7.93460 8.04931 8.21479 8.65493 8.75873 10.22222 10.44259 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.044916 B = 0.002216 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.235141 B =12629.768763 C =12703.082034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.081 3.919 3 Si 0.928 3.072 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.503 4.503 8 H 0.083 0.917 9 C 0.480 3.520 10 O -0.553 6.553 11 O -0.339 6.339 12 C 0.130 3.870 13 C -0.123 4.123 14 C -0.127 4.127 15 C 0.109 3.891 16 N -0.662 5.662 17 C 0.573 3.427 18 O -0.515 6.515 19 C -0.150 4.150 20 C -0.083 4.083 21 C -0.236 4.236 22 S 0.186 5.814 23 C -0.213 4.213 24 C -0.100 4.100 25 C -0.115 4.115 26 H 0.277 0.723 27 H 0.129 0.871 28 H 0.123 0.877 29 H 0.405 0.595 30 H 0.156 0.844 31 H 0.171 0.829 32 H 0.171 0.829 33 H 0.137 0.863 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.499 -22.249 3.036 23.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.142 4.142 3 Si 0.751 3.249 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.535 4.535 8 H 0.101 0.899 9 C 0.343 3.657 10 O -0.447 6.447 11 O -0.259 6.259 12 C 0.086 3.914 13 C -0.142 4.142 14 C -0.148 4.148 15 C 0.016 3.984 16 N -0.306 5.306 17 C 0.360 3.640 18 O -0.392 6.392 19 C -0.168 4.168 20 C -0.112 4.112 21 C -0.371 4.371 22 S 0.452 5.548 23 C -0.351 4.351 24 C -0.120 4.120 25 C -0.134 4.134 26 H 0.088 0.912 27 H 0.147 0.853 28 H 0.141 0.859 29 H 0.241 0.759 30 H 0.174 0.826 31 H 0.188 0.812 32 H 0.188 0.812 33 H 0.154 0.846 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.509 -22.979 3.202 24.097 hybrid contribution 0.818 1.633 -0.448 1.880 sum -5.691 -21.346 2.754 22.263 Atomic orbital electron populations 1.70020 1.07429 1.28537 1.31300 1.25890 0.94885 1.01012 0.92411 0.86021 0.80073 0.79475 0.79335 1.19182 1.20030 1.18293 1.19599 0.95020 0.87055 1.51846 0.89896 1.20071 0.86941 0.80954 0.77763 1.90724 1.14460 1.84986 1.54519 1.84669 1.41165 1.13274 1.86793 1.18710 0.92936 0.87478 0.92270 1.20968 1.00405 0.95966 0.96869 1.20557 0.98403 0.97920 0.97870 1.17557 0.97513 0.87355 0.95975 1.43159 1.51743 1.20199 1.15518 1.17660 0.79428 0.82994 0.83932 1.90820 1.46733 1.75287 1.26325 1.20286 1.05635 0.97074 0.93844 1.21167 0.98586 0.91619 0.99857 1.25534 1.08089 1.03850 0.99617 1.83080 1.53259 1.12189 1.06305 1.25719 1.04426 1.02644 1.02349 1.21022 0.99947 0.93626 0.97385 1.21334 0.96866 0.95892 0.99311 0.91194 0.85275 0.85867 0.75928 0.82622 0.81165 0.81160 0.84567 0.85525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -21.47 11.73 55.56 0.65 -20.82 16 2 C 0.08 2.19 5.50 -17.34 -0.10 2.09 16 3 Si 0.93 19.36 29.56 -169.99 -5.02 14.34 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.50 -14.36 9.46 -37.51 -0.35 -14.71 16 8 H 0.08 2.19 7.85 -52.48 -0.41 1.78 16 9 C 0.48 14.30 7.61 32.08 0.24 14.54 16 10 O -0.55 -17.89 14.46 -19.39 -0.28 -18.17 16 11 O -0.34 -9.00 9.95 -25.19 -0.25 -9.25 16 12 C 0.13 3.01 5.27 -39.11 -0.21 2.81 16 13 C -0.12 -2.39 9.98 -39.44 -0.39 -2.78 16 14 C -0.13 -2.05 9.96 -39.40 -0.39 -2.44 16 15 C 0.11 1.82 6.30 -83.64 -0.53 1.29 16 16 N -0.66 -8.55 5.30 -10.86 -0.06 -8.61 16 17 C 0.57 7.98 7.63 -12.64 -0.10 7.88 16 18 O -0.52 -9.06 14.23 5.23 0.07 -8.99 16 19 C -0.15 -1.58 5.98 -104.63 -0.63 -2.21 16 20 C -0.08 -0.79 10.10 -39.02 -0.39 -1.19 16 21 C -0.24 -1.65 11.12 28.86 0.32 -1.33 16 22 S 0.19 1.12 23.02 -107.50 -2.48 -1.35 16 23 C -0.21 -1.62 10.38 29.94 0.31 -1.31 16 24 C -0.10 -1.94 8.69 -39.40 -0.34 -2.28 16 25 C -0.11 -2.53 9.53 -39.43 -0.38 -2.90 16 26 H 0.28 7.10 8.29 -40.82 -0.34 6.77 16 27 H 0.13 2.30 8.06 -52.49 -0.42 1.88 16 28 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.41 3.67 7.33 -40.82 -0.30 3.37 16 30 H 0.16 1.48 8.06 -52.49 -0.42 1.05 16 31 H 0.17 0.76 8.06 -52.48 -0.42 0.34 16 32 H 0.17 0.86 7.02 -52.49 -0.37 0.49 16 33 H 0.14 2.61 6.22 -52.49 -0.33 2.28 16 34 H 0.13 2.82 8.06 -52.49 -0.42 2.39 16 LS Contribution 324.07 15.07 4.88 4.88 Total: -1.00 -36.01 324.07 -8.06 -44.07 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -2.65 Total: 6.44 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -2.93 Total: -2.54 kcal Atomic # 7 Polarization: -30.03 SS G_CDS: 0.59 Total: -29.43 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -0.46 Total: -36.41 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.48 Total: -1.35 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -36.01 -8.06 -44.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185185491.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.960 kcal (2) G-P(sol) polarization free energy of solvation -36.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds