Wall clock time and date at job start Tue Mar 31 2020 11:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34230 * 116.99946 * 2 1 4 4 O 1.20822 * 120.00495 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99875 * 180.02562 * 3 2 1 6 6 C 1.53007 * 109.47276 * 205.00001 * 5 3 2 7 7 N 1.46501 * 109.47407 * 325.00004 * 5 3 2 8 8 C 1.36938 * 119.99749 * 294.74563 * 7 5 3 9 9 H 1.07993 * 120.00078 * 359.97438 * 8 7 5 10 10 C 1.38810 * 119.99769 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99894 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 120.00206 * 0.02562 * 10 8 7 13 13 H 1.48491 * 109.47347 * 89.99304 * 12 10 8 14 14 H 1.48496 * 109.46998 * 209.99632 * 12 10 8 15 15 H 1.48503 * 109.47106 * 329.99182 * 12 10 8 16 16 C 1.50699 * 109.47385 * 84.99806 * 5 3 2 17 17 C 1.38268 * 119.98389 * 215.24008 * 16 5 3 18 18 C 1.38208 * 120.03519 * 179.97438 * 17 16 5 19 19 C 1.38348 * 120.00336 * 0.02562 * 18 17 16 20 20 Cl 1.73592 * 120.01877 * 179.97438 * 19 18 17 21 21 C 1.38447 * 119.96062 * 359.97438 * 19 18 17 22 22 Cl 1.73598 * 120.01961 * 179.97438 * 21 19 18 23 23 C 1.38214 * 119.97786 * 35.49589 * 16 5 3 24 24 H 1.08996 * 109.47331 * 180.02562 * 1 2 3 25 25 H 1.09010 * 109.47151 * 299.99829 * 1 2 3 26 26 H 1.09003 * 109.47547 * 59.99815 * 1 2 3 27 27 H 1.08997 * 109.46740 * 299.99956 * 6 5 3 28 28 H 1.09000 * 109.46675 * 59.99776 * 6 5 3 29 29 H 1.08998 * 109.46740 * 180.02562 * 6 5 3 30 30 H 0.96998 * 120.00047 * 114.74098 * 7 5 3 31 31 H 0.97004 * 119.99967 * 180.02562 * 11 10 8 32 32 H 1.07993 * 119.98177 * 359.97438 * 17 16 5 33 33 H 1.07996 * 119.99446 * 179.97438 * 18 17 16 34 34 H 1.07993 * 119.99864 * 359.97438 * 23 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5662 1.2749 -0.0006 6 6 4.0074 2.6070 0.6092 7 7 4.1135 0.1704 0.7912 8 6 3.8770 0.1111 2.1387 9 1 3.2875 0.8787 2.6178 10 6 4.3951 -0.9357 2.8888 11 7 4.1682 -0.9924 4.1841 12 14 5.4154 -2.2631 2.0603 13 1 6.8473 -1.8699 2.0778 14 1 5.2452 -3.5455 2.7894 15 1 4.9647 -2.4290 0.6551 16 6 4.0739 1.1777 -1.4162 17 6 5.2622 0.5223 -1.6807 18 6 5.7285 0.4321 -2.9786 19 6 5.0064 0.9983 -4.0140 20 17 5.5920 0.8858 -5.6443 21 6 3.8165 1.6545 -3.7491 22 17 2.9095 2.3661 -5.0471 23 6 3.3539 1.7485 -2.4487 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 3.6003 3.4287 0.0200 28 1 3.6403 2.6772 1.6331 29 1 5.0959 2.6642 0.6083 30 1 4.6433 -0.5189 0.3609 31 1 4.5306 -1.7237 4.7084 32 1 5.8264 0.0806 -0.8726 33 1 6.6570 -0.0796 -3.1844 34 1 2.4277 2.2635 -2.2410 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185287333.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:36 Heat of formation + Delta-G solvation = -66.771947 kcal Electronic energy + Delta-G solvation = -22497.584388 eV Core-core repulsion = 18868.546251 eV Total energy + Delta-G solvation = -3629.038138 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.99329 -40.48152 -38.24175 -37.61994 -37.41885 -36.96854 -34.31223 -32.42255 -31.65474 -30.20552 -28.83760 -26.42924 -24.97765 -23.92040 -23.30680 -20.92048 -20.22689 -18.73443 -18.48198 -17.76032 -17.31689 -16.82179 -16.57187 -16.27251 -15.88778 -15.30370 -15.03541 -14.84162 -14.70100 -14.20191 -13.91526 -13.76432 -13.54291 -13.09843 -13.04186 -12.96063 -12.87415 -12.76436 -12.57061 -12.36420 -12.20181 -12.09280 -11.91604 -11.77768 -11.70170 -11.56814 -11.02406 -10.11272 -9.81253 -9.49402 -8.02772 -5.43313 -0.26264 -0.07088 0.71639 1.05728 1.18383 1.41970 1.46371 1.53109 1.86629 2.26167 2.49499 3.13668 3.28482 3.45227 3.51485 3.85622 3.95222 4.04217 4.13999 4.25416 4.27998 4.31554 4.56794 4.63544 4.66499 4.80081 4.82973 4.92961 5.18710 5.22522 5.36632 5.48320 5.68417 6.15392 6.76981 6.99237 7.65018 7.87119 9.17038 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.014828 B = 0.005166 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.925121 B = 5418.661855 C = 6575.744477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.352 6.352 3 C 0.457 3.543 4 O -0.541 6.541 5 C 0.252 3.748 6 C -0.130 4.130 7 N -0.718 5.718 8 C -0.235 4.235 9 H 0.055 0.945 10 C -0.044 4.044 11 N -0.974 5.974 12 Si 0.942 3.058 13 H -0.266 1.266 14 H -0.299 1.299 15 H -0.245 1.245 16 C -0.066 4.066 17 C -0.088 4.088 18 C -0.080 4.080 19 C -0.033 4.033 20 Cl -0.040 7.040 21 C -0.029 4.029 22 Cl -0.044 7.044 23 C -0.097 4.097 24 H 0.123 0.877 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.086 0.914 30 H 0.377 0.623 31 H 0.260 0.740 32 H 0.150 0.850 33 H 0.178 0.822 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.837 2.695 -19.648 19.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.267 6.267 3 C 0.298 3.702 4 O -0.431 6.431 5 C 0.159 3.841 6 C -0.188 4.188 7 N -0.364 5.364 8 C -0.365 4.365 9 H 0.073 0.927 10 C -0.237 4.237 11 N -0.623 5.623 12 Si 0.768 3.232 13 H -0.191 1.191 14 H -0.226 1.226 15 H -0.169 1.169 16 C -0.067 4.067 17 C -0.106 4.106 18 C -0.098 4.098 19 C -0.060 4.060 20 Cl -0.010 7.010 21 C -0.057 4.057 22 Cl -0.015 7.015 23 C -0.117 4.117 24 H 0.141 0.859 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.215 0.785 31 H 0.069 0.931 32 H 0.168 0.832 33 H 0.195 0.805 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.501 3.060 -19.691 19.984 hybrid contribution -0.215 -0.647 0.233 0.721 sum 1.286 2.413 -19.458 19.649 Atomic orbital electron populations 1.23481 0.76161 1.05152 1.02060 1.86639 1.23970 1.33343 1.82701 1.25567 0.93650 0.80989 0.69953 1.90548 1.67851 1.37031 1.47691 1.18479 0.84123 0.92031 0.89487 1.21982 1.02770 0.93523 1.00550 1.42707 1.62288 1.26512 1.04864 1.18698 1.27492 1.07400 0.82958 0.92694 1.25406 1.01825 1.00733 0.95728 1.69877 1.50902 1.34529 1.06950 0.85623 0.79602 0.78664 0.79321 1.19086 1.22593 1.16876 1.19536 0.96178 0.98695 0.92289 1.21212 0.94807 0.97029 0.97590 1.21313 1.00759 0.98162 0.89614 1.20896 0.94660 1.02223 0.88258 1.98387 1.87630 1.96836 1.18191 1.20641 0.93989 1.01177 0.89854 1.98382 1.73541 1.81981 1.47621 1.20828 1.00743 1.00114 0.89967 0.85879 0.93113 0.91132 0.90723 0.93489 0.89528 0.78516 0.93084 0.83208 0.80506 0.84658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 10.56 113.37 1.20 1.95 16 2 O -0.35 -13.85 10.27 -51.42 -0.53 -14.38 16 3 C 0.46 18.25 5.20 71.24 0.37 18.62 16 4 O -0.54 -22.36 15.25 21.98 0.34 -22.02 16 5 C 0.25 9.32 0.94 2.11 0.00 9.32 16 6 C -0.13 -4.60 7.87 71.98 0.57 -4.03 16 7 N -0.72 -30.37 4.41 -310.17 -1.37 -31.73 16 8 C -0.24 -12.38 9.35 84.03 0.79 -11.59 16 9 H 0.06 3.28 7.17 -2.91 -0.02 3.25 16 10 C -0.04 -2.42 5.50 84.86 0.47 -1.95 16 11 N -0.97 -59.18 13.97 21.65 0.30 -58.88 16 12 Si 0.94 41.01 27.74 68.60 1.90 42.92 16 13 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 14 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 15 H -0.24 -9.41 6.52 99.48 0.65 -8.76 16 16 C -0.07 -1.97 4.79 -19.86 -0.10 -2.06 16 17 C -0.09 -2.21 9.00 22.27 0.20 -2.01 16 18 C -0.08 -1.62 9.83 22.29 0.22 -1.40 16 19 C -0.03 -0.72 6.32 22.35 0.14 -0.57 16 20 Cl -0.04 -0.76 27.96 -2.72 -0.08 -0.83 16 21 C -0.03 -0.71 6.32 22.35 0.14 -0.57 16 22 Cl -0.04 -1.00 27.96 -2.72 -0.08 -1.08 16 23 C -0.10 -2.71 8.93 22.29 0.20 -2.51 16 24 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 25 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 26 H 0.07 1.86 8.13 -2.39 -0.02 1.84 16 27 H 0.07 2.38 7.87 -2.39 -0.02 2.36 16 28 H 0.05 1.92 7.00 -2.39 -0.02 1.90 16 29 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 30 H 0.38 14.76 3.59 -92.71 -0.33 14.43 16 31 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 32 H 0.15 3.70 6.50 -2.91 -0.02 3.68 16 33 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 34 H 0.14 3.99 6.78 -2.91 -0.02 3.97 16 Total: -1.00 -64.71 320.73 5.45 -59.26 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.76 Total: 23.55 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 4.19 Total: 3.20 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -1.06 Total: -90.61 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -0.19 Total: -36.40 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 1.90 Total: 42.92 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -0.15 Total: -1.91 kcal Total: -64.71 5.45 -59.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185287333.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.512 kcal (2) G-P(sol) polarization free energy of solvation -64.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds