Wall clock time and date at job start Tue Mar 31 2020 11:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99950 * 2 1 4 4 H 1.48501 * 109.47098 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47393 * 119.99611 * 3 2 1 6 6 H 1.48500 * 109.47150 * 239.99758 * 3 2 1 7 7 C 1.37872 * 120.00320 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00405 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99753 * 359.97438 * 7 2 1 10 10 O 1.42899 * 112.94253 * 50.33668 * 9 7 2 11 11 C 1.53944 * 113.74375 * 278.74215 * 9 7 2 12 12 N 1.47811 * 86.03743 * 222.08442 * 11 9 7 13 13 C 1.34771 * 134.45595 * 204.64180 * 12 11 9 14 14 O 1.21578 * 120.00070 * 174.65525 * 13 12 11 15 15 C 1.47657 * 120.00220 * 354.66167 * 13 12 11 16 16 C 1.39714 * 120.11659 * 335.02497 * 15 13 12 17 17 C 1.37968 * 119.86308 * 180.02562 * 16 15 13 18 18 F 1.35102 * 119.94656 * 180.02562 * 17 16 15 19 19 C 1.38913 * 120.10777 * 359.97438 * 17 16 15 20 20 F 1.35107 * 119.87370 * 180.02562 * 19 17 16 21 21 C 1.38505 * 120.24819 * 0.02562 * 19 17 16 22 22 C 1.38057 * 120.13071 * 359.72045 * 21 19 17 23 23 Cl 1.73597 * 120.05445 * 180.29402 * 22 21 19 24 24 C 1.47576 * 91.05090 * 24.55045 * 12 11 9 25 25 H 0.97009 * 119.99875 * 0.02562 * 1 2 3 26 26 H 0.96701 * 113.99876 * 309.66099 * 10 9 7 27 27 H 1.08998 * 113.76952 * 336.35335 * 11 9 7 28 28 H 1.09003 * 113.76881 * 107.74504 * 11 9 7 29 29 H 1.07997 * 120.07020 * 359.97438 * 16 15 13 30 30 H 1.07995 * 119.93384 * 179.97438 * 21 19 17 31 31 H 1.08999 * 113.76914 * 221.15450 * 24 12 11 32 32 H 1.09001 * 113.77448 * 89.75255 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 8 0.2447 -2.5622 -1.0109 11 6 0.7562 -2.9279 1.3949 12 7 1.1920 -4.2891 1.0180 13 6 0.8428 -5.5325 1.4030 14 8 1.3163 -6.4993 0.8381 15 6 -0.1151 -5.7207 2.5108 16 6 -0.2660 -4.7289 3.4832 17 6 -1.1622 -4.9104 4.5164 18 9 -1.3098 -3.9522 5.4573 19 6 -1.9137 -6.0764 4.5902 20 9 -2.7903 -6.2490 5.6037 21 6 -1.7677 -7.0626 3.6287 22 6 -0.8778 -6.8892 2.5876 23 17 -0.7020 -8.1232 1.3794 24 6 2.1608 -3.7401 0.0496 25 1 -0.4850 0.8401 -0.0004 26 1 -0.3474 -1.7979 -1.0251 27 1 1.3273 -2.4954 2.2164 28 1 -0.3215 -2.8313 1.5274 29 1 0.3182 -3.8223 3.4267 30 1 -2.3543 -7.9672 3.6912 31 1 2.2027 -4.2906 -0.8902 32 1 3.1456 -3.5466 0.4749 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186799490.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:57 Heat of formation + Delta-G solvation = -106.057398 kcal Electronic energy + Delta-G solvation = -24035.846291 eV Core-core repulsion = 19853.307928 eV Total energy + Delta-G solvation = -4182.538363 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.042 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -49.73024 -48.78903 -40.20244 -38.72075 -37.17834 -36.47387 -34.08009 -32.29625 -31.66054 -30.52527 -28.55395 -25.62534 -25.52497 -23.99000 -23.08299 -20.49833 -19.15551 -18.05885 -17.88586 -17.43199 -17.17375 -16.60468 -16.24791 -15.66899 -15.19199 -15.14211 -14.86830 -14.80502 -14.44084 -14.16342 -13.84637 -13.56166 -13.28863 -12.94294 -12.54157 -12.43895 -12.08622 -11.82611 -11.62803 -11.28801 -11.21310 -11.11106 -11.02100 -10.60250 -10.37683 -9.74428 -9.40946 -9.33257 -8.86010 -8.82800 -8.52476 -7.97815 -6.45956 -4.56961 0.26492 0.56665 1.88025 2.57926 3.12481 3.17548 3.19294 3.24398 3.42681 3.51838 3.98417 4.13361 4.20212 4.44172 4.65008 4.79121 5.01612 5.25338 5.33707 5.41553 5.51142 5.62783 5.85023 6.04042 6.24618 6.26668 6.31519 6.47878 6.55114 6.98448 7.56146 7.73211 8.24038 8.46484 8.50345 9.14675 9.34560 10.60781 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.015806 B = 0.004388 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.080683 B = 6379.568261 C = 7674.236622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.284 1.284 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.072 0.928 9 C 0.241 3.759 10 O -0.571 6.571 11 C 0.068 3.932 12 N -0.624 5.624 13 C 0.567 3.433 14 O -0.531 6.531 15 C -0.090 4.090 16 C -0.082 4.082 17 C 0.068 3.932 18 F -0.120 7.120 19 C 0.096 3.904 20 F -0.120 7.120 21 C -0.130 4.130 22 C 0.023 3.977 23 Cl -0.015 7.015 24 C 0.116 3.884 25 H 0.274 0.726 26 H 0.392 0.608 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.166 0.834 30 H 0.161 0.839 31 H 0.075 0.925 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.486 -8.880 8.205 12.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.129 4.129 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.578 4.578 8 H 0.090 0.910 9 C 0.200 3.800 10 O -0.383 6.383 11 C -0.054 4.054 12 N -0.357 5.357 13 C 0.355 3.645 14 O -0.410 6.410 15 C -0.095 4.095 16 C -0.102 4.102 17 C 0.048 3.952 18 F -0.098 7.098 19 C 0.075 3.925 20 F -0.098 7.098 21 C -0.149 4.149 22 C -0.005 4.005 23 Cl 0.015 6.985 24 C -0.006 4.006 25 H 0.085 0.915 26 H 0.247 0.753 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.183 0.817 30 H 0.179 0.821 31 H 0.093 0.907 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.188 -10.090 7.778 13.132 hybrid contribution -0.202 1.531 0.669 1.683 sum -3.389 -8.559 8.447 12.494 Atomic orbital electron populations 1.69384 1.06179 1.28424 1.49684 1.25061 0.95019 0.99891 0.92947 0.86393 0.79526 0.81622 0.79032 1.20985 1.19862 1.19811 1.21444 0.93931 0.89827 1.52607 0.90982 1.19808 0.85647 0.91265 0.83321 1.86073 1.47036 1.49884 1.55285 1.24547 1.00309 0.77296 1.03240 1.50154 1.39916 1.04322 1.41285 1.17394 0.81972 0.82674 0.82479 1.90811 1.55999 1.38721 1.55490 1.19860 0.98893 0.93272 0.97434 1.21534 0.96900 1.00102 0.91637 1.17497 1.00123 0.86993 0.90621 1.91575 1.94663 1.61316 1.62272 1.17563 0.92094 0.94431 0.88363 1.91564 1.65983 1.95388 1.56884 1.20814 1.00688 1.00297 0.93142 1.20676 0.96195 0.91264 0.92382 1.98435 1.96464 1.50618 1.53002 1.23518 0.93129 0.92572 0.91353 0.91527 0.75279 0.89587 0.90892 0.81665 0.82116 0.90696 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.75 11.20 55.43 0.62 -21.13 16 2 C 0.07 1.76 5.39 -17.82 -0.10 1.66 16 3 Si 0.91 18.71 29.54 -169.99 -5.02 13.69 16 4 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.54 -12.79 8.61 -34.44 -0.30 -13.08 16 8 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.24 5.42 1.40 -90.84 -0.13 5.29 16 10 O -0.57 -14.00 13.48 -35.23 -0.48 -14.48 16 11 C 0.07 1.34 5.69 -2.84 -0.02 1.33 16 12 N -0.62 -12.20 3.58 -179.30 -0.64 -12.84 16 13 C 0.57 10.81 7.68 -12.42 -0.10 10.71 16 14 O -0.53 -11.20 15.28 5.30 0.08 -11.12 16 15 C -0.09 -1.43 5.82 -104.94 -0.61 -2.04 16 16 C -0.08 -1.17 8.80 -39.13 -0.34 -1.51 16 17 C 0.07 0.90 7.30 -39.43 -0.29 0.61 16 18 F -0.12 -1.64 17.17 2.25 0.04 -1.60 16 19 C 0.10 1.17 7.31 -39.23 -0.29 0.89 16 20 F -0.12 -1.44 17.17 2.25 0.04 -1.40 16 21 C -0.13 -1.48 9.79 -39.55 -0.39 -1.87 16 22 C 0.02 0.33 6.34 -39.09 -0.25 0.08 16 23 Cl -0.01 -0.22 26.36 -51.86 -1.37 -1.58 16 24 C 0.12 2.34 8.23 -2.97 -0.02 2.31 16 25 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 26 H 0.39 9.73 6.60 45.56 0.30 10.03 16 27 H 0.09 1.57 7.71 -51.93 -0.40 1.17 16 28 H 0.07 1.45 7.86 -51.93 -0.41 1.04 16 29 H 0.17 2.31 5.56 -52.49 -0.29 2.01 16 30 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 32 H 0.09 1.64 8.09 -51.93 -0.42 1.22 16 LS Contribution 305.60 15.07 4.61 4.61 Total: -1.00 -26.01 305.60 -6.55 -32.56 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -1.61 Total: 8.91 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -2.82 Total: 4.39 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: -0.02 Total: -33.97 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.39 Total: -25.60 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.08 Total: -3.01 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.69 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.37 Total: -1.58 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -26.01 -6.55 -32.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186799490.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.493 kcal (2) G-P(sol) polarization free energy of solvation -26.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds