Wall clock time and date at job start Tue Mar 31 2020 11:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99950 * 2 1 4 4 H 1.48501 * 109.47098 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47393 * 119.99611 * 3 2 1 6 6 H 1.48500 * 109.47150 * 239.99758 * 3 2 1 7 7 C 1.37872 * 120.00320 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00405 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99753 * 359.97438 * 7 2 1 10 10 O 1.42899 * 112.94253 * 50.33668 * 9 7 2 11 11 C 1.53944 * 113.74375 * 278.74215 * 9 7 2 12 12 N 1.47811 * 86.03743 * 222.08442 * 11 9 7 13 13 C 1.34771 * 134.45595 * 204.64180 * 12 11 9 14 14 O 1.21578 * 120.00070 * 174.65525 * 13 12 11 15 15 C 1.47657 * 120.00220 * 354.66167 * 13 12 11 16 16 C 1.39714 * 120.11659 * 335.02497 * 15 13 12 17 17 C 1.37968 * 119.86308 * 180.02562 * 16 15 13 18 18 F 1.35102 * 119.94656 * 180.02562 * 17 16 15 19 19 C 1.38913 * 120.10777 * 359.97438 * 17 16 15 20 20 F 1.35107 * 119.87370 * 180.02562 * 19 17 16 21 21 C 1.38505 * 120.24819 * 0.02562 * 19 17 16 22 22 C 1.38057 * 120.13071 * 359.72045 * 21 19 17 23 23 Cl 1.73597 * 120.05445 * 180.29402 * 22 21 19 24 24 C 1.47576 * 91.05090 * 24.55045 * 12 11 9 25 25 H 0.97009 * 119.99875 * 0.02562 * 1 2 3 26 26 H 0.96701 * 113.99876 * 309.66099 * 10 9 7 27 27 H 1.08998 * 113.76952 * 336.35335 * 11 9 7 28 28 H 1.09003 * 113.76881 * 107.74504 * 11 9 7 29 29 H 1.07997 * 120.07020 * 359.97438 * 16 15 13 30 30 H 1.07995 * 119.93384 * 179.97438 * 21 19 17 31 31 H 1.08999 * 113.76914 * 221.15450 * 24 12 11 32 32 H 1.09001 * 113.77448 * 89.75255 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 8 0.2447 -2.5622 -1.0109 11 6 0.7562 -2.9279 1.3949 12 7 1.1920 -4.2891 1.0180 13 6 0.8428 -5.5325 1.4030 14 8 1.3163 -6.4993 0.8381 15 6 -0.1151 -5.7207 2.5108 16 6 -0.2660 -4.7289 3.4832 17 6 -1.1622 -4.9104 4.5164 18 9 -1.3098 -3.9522 5.4573 19 6 -1.9137 -6.0764 4.5902 20 9 -2.7903 -6.2490 5.6037 21 6 -1.7677 -7.0626 3.6287 22 6 -0.8778 -6.8892 2.5876 23 17 -0.7020 -8.1232 1.3794 24 6 2.1608 -3.7401 0.0496 25 1 -0.4850 0.8401 -0.0004 26 1 -0.3474 -1.7979 -1.0251 27 1 1.3273 -2.4954 2.2164 28 1 -0.3215 -2.8313 1.5274 29 1 0.3182 -3.8223 3.4267 30 1 -2.3543 -7.9672 3.6912 31 1 2.2027 -4.2906 -0.8902 32 1 3.1456 -3.5466 0.4749 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186799490.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:51 Heat of formation + Delta-G solvation = -121.705778 kcal Electronic energy + Delta-G solvation = -24036.524856 eV Core-core repulsion = 19853.307928 eV Total energy + Delta-G solvation = -4183.216927 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.042 amu Computer time = 4.83 seconds Orbital eigenvalues (eV) -50.75779 -49.82431 -41.61180 -40.07447 -38.69253 -37.59144 -35.83964 -34.13519 -32.82930 -31.64508 -30.13338 -27.28772 -27.12488 -25.16575 -24.22853 -22.02697 -20.60907 -19.45956 -19.11709 -18.79267 -18.48917 -17.68668 -17.53077 -17.25075 -16.74879 -16.35341 -16.20884 -15.98082 -15.92013 -15.41485 -15.10668 -14.95435 -14.56363 -14.31603 -14.06187 -13.90493 -13.67389 -13.39992 -12.92838 -12.83728 -12.74921 -12.38897 -12.25978 -12.24081 -12.19427 -11.35665 -10.95025 -10.63044 -10.46790 -10.25874 -9.94898 -9.57538 -8.25139 -6.41857 -0.85926 -0.47189 0.77988 1.37382 1.49665 1.52551 1.58755 1.75858 2.16907 2.39455 2.42253 2.92737 2.96928 3.06626 3.24258 3.61311 3.74975 3.87427 4.14263 4.17715 4.31778 4.42563 4.44760 4.58454 4.62553 4.74925 4.88346 4.94089 5.21728 5.24598 5.74282 5.94016 6.64112 6.70965 6.99114 7.31805 7.45249 8.80504 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.015806 B = 0.004388 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.080683 B = 6379.568261 C = 7674.236622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.036 3.964 3 Si 0.964 3.036 4 H -0.285 1.285 5 H -0.267 1.267 6 H -0.276 1.276 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.219 3.781 10 O -0.586 6.586 11 C 0.086 3.914 12 N -0.627 5.627 13 C 0.564 3.436 14 O -0.557 6.557 15 C -0.110 4.110 16 C -0.079 4.079 17 C 0.067 3.933 18 F -0.122 7.122 19 C 0.110 3.890 20 F -0.114 7.114 21 C -0.109 4.109 22 C 0.019 3.981 23 Cl -0.022 7.022 24 C 0.117 3.883 25 H 0.275 0.725 26 H 0.387 0.613 27 H 0.101 0.899 28 H 0.068 0.932 29 H 0.165 0.835 30 H 0.196 0.804 31 H 0.063 0.937 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.863 -9.110 9.647 13.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.165 4.165 3 Si 0.790 3.210 4 H -0.211 1.211 5 H -0.192 1.192 6 H -0.201 1.201 7 C -0.593 4.593 8 H 0.093 0.907 9 C 0.177 3.823 10 O -0.398 6.398 11 C -0.036 4.036 12 N -0.359 5.359 13 C 0.354 3.646 14 O -0.437 6.437 15 C -0.114 4.114 16 C -0.099 4.099 17 C 0.047 3.953 18 F -0.100 7.100 19 C 0.089 3.911 20 F -0.092 7.092 21 C -0.128 4.128 22 C -0.009 4.009 23 Cl 0.008 6.992 24 C -0.005 4.005 25 H 0.085 0.915 26 H 0.241 0.759 27 H 0.119 0.881 28 H 0.087 0.913 29 H 0.182 0.818 30 H 0.213 0.787 31 H 0.082 0.918 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.563 -10.329 9.234 14.306 hybrid contribution -0.124 1.560 0.239 1.583 sum -3.688 -8.769 9.473 13.425 Atomic orbital electron populations 1.69455 1.07066 1.28939 1.50108 1.25689 0.95680 1.02409 0.92717 0.85506 0.78315 0.78313 0.78898 1.21087 1.19166 1.20132 1.21691 0.94234 0.90615 1.52781 0.90745 1.20121 0.85907 0.91908 0.84320 1.86060 1.47499 1.49675 1.56541 1.24319 1.00145 0.77157 1.01999 1.50126 1.39901 1.04654 1.41253 1.17840 0.82009 0.81908 0.82846 1.90788 1.57022 1.39225 1.56695 1.19614 0.99692 0.94865 0.97224 1.21406 0.97153 0.99686 0.91608 1.17487 1.00141 0.87357 0.90337 1.91574 1.94659 1.61546 1.62264 1.17540 0.91389 0.93902 0.88245 1.91591 1.65675 1.95284 1.56646 1.21039 0.99417 1.00988 0.91316 1.20769 0.96612 0.90571 0.92960 1.98435 1.96541 1.50727 1.53510 1.23510 0.93913 0.91556 0.91480 0.91513 0.75855 0.88094 0.91324 0.81782 0.78717 0.91826 0.87195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -44.31 11.20 21.44 0.24 -44.07 16 2 C 0.04 1.69 5.39 84.65 0.46 2.15 16 3 Si 0.96 37.83 29.54 68.60 2.03 39.86 16 4 H -0.29 -11.15 7.11 99.48 0.71 -10.45 16 5 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 6 H -0.28 -10.88 7.11 99.48 0.71 -10.18 16 7 C -0.56 -26.11 8.61 25.60 0.22 -25.89 16 8 H 0.07 3.38 7.81 -2.91 -0.02 3.35 16 9 C 0.22 9.84 1.40 -10.88 -0.02 9.82 16 10 O -0.59 -29.24 13.48 -148.98 -2.01 -31.25 16 11 C 0.09 3.35 5.69 86.44 0.49 3.84 16 12 N -0.63 -24.38 3.58 -843.29 -3.02 -27.40 16 13 C 0.56 21.36 7.68 86.73 0.67 22.03 16 14 O -0.56 -23.48 15.28 -3.96 -0.06 -23.54 16 15 C -0.11 -3.36 5.82 -20.07 -0.12 -3.48 16 16 C -0.08 -2.14 8.80 22.56 0.20 -1.94 16 17 C 0.07 1.64 7.30 22.37 0.16 1.81 16 18 F -0.12 -3.11 17.17 44.97 0.77 -2.34 16 19 C 0.11 2.36 7.31 22.50 0.16 2.52 16 20 F -0.11 -2.36 17.17 44.97 0.77 -1.59 16 21 C -0.11 -2.14 9.79 22.29 0.22 -1.93 16 22 C 0.02 0.51 6.34 22.59 0.14 0.65 16 23 Cl -0.02 -0.61 26.36 -2.72 -0.07 -0.68 16 24 C 0.12 4.73 8.23 86.49 0.71 5.44 16 25 H 0.28 12.75 8.31 -92.70 -0.77 11.98 16 26 H 0.39 19.63 6.60 -74.06 -0.49 19.14 16 27 H 0.10 3.59 7.71 -2.39 -0.02 3.57 16 28 H 0.07 2.71 7.86 -2.39 -0.02 2.69 16 29 H 0.16 4.42 5.56 -2.91 -0.02 4.40 16 30 H 0.20 2.51 8.06 -2.91 -0.02 2.48 16 31 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.11 3.93 8.09 -2.39 -0.02 3.92 16 Total: -1.00 -54.48 305.60 2.68 -51.80 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 0.72 Total: 24.16 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 3.30 Total: 15.04 kcal Atomic # 7 Polarization: -68.69 SS G_CDS: -2.78 Total: -71.47 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: -2.07 Total: -54.78 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 1.54 Total: -3.93 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.86 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.07 Total: -0.68 kcal Total: -54.48 2.68 -51.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186799490.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.902 kcal (2) G-P(sol) polarization free energy of solvation -54.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.84 seconds