Wall clock time and date at job start Tue Mar 31 2020 11:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42896 * 112.94066 * 48.43519 * 9 7 2 11 11 C 1.53938 * 113.73589 * 276.72885 * 9 7 2 12 12 N 1.47958 * 86.18121 * 221.92329 * 11 9 7 13 13 C 1.46903 * 111.00224 * 137.58241 * 12 11 9 14 14 C 1.50704 * 109.47018 * 70.63784 * 13 12 11 15 15 C 1.38200 * 120.01246 * 259.72374 * 14 13 12 16 16 C 1.38336 * 120.05719 * 179.77228 * 15 14 13 17 17 Cl 1.73597 * 119.94771 * 180.23244 * 16 15 14 18 18 C 1.38381 * 120.09398 * 0.50375 * 16 15 14 19 19 C 1.38208 * 120.03463 * 359.75043 * 18 16 15 20 20 Cl 1.73601 * 120.03578 * 180.02562 * 19 18 16 21 21 C 1.38651 * 120.01687 * 80.00122 * 14 13 12 22 22 O 1.35946 * 120.04260 * 0.02562 * 21 14 13 23 23 C 1.47957 * 90.76493 * 24.68742 * 12 11 9 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 0.96709 * 114.00030 * 309.66214 * 10 9 7 26 26 H 1.09003 * 113.75836 * 336.24227 * 11 9 7 27 27 H 1.08999 * 113.75908 * 107.60037 * 11 9 7 28 28 H 1.08997 * 109.47135 * 190.63735 * 13 12 11 29 29 H 1.08999 * 109.46521 * 310.64012 * 13 12 11 30 30 H 1.07998 * 119.96626 * 0.02562 * 15 14 13 31 31 H 1.08006 * 119.98646 * 179.77037 * 18 16 15 32 32 H 0.96698 * 114.00370 * 90.00074 * 22 21 14 33 33 H 1.08999 * 113.76060 * 220.99233 * 23 12 11 34 34 H 1.09001 * 113.85944 * 89.64050 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2161 -2.5447 -0.9847 11 6 0.7988 -2.9535 1.3990 12 7 1.2180 -4.3109 0.9854 13 6 1.9380 -4.9927 2.0693 14 6 0.9716 -5.3437 3.1712 15 6 0.8969 -4.5539 4.3028 16 6 0.0068 -4.8726 5.3127 17 17 -0.0890 -3.8750 6.7301 18 6 -0.8032 -5.9886 5.1970 19 6 -0.7279 -6.7841 4.0694 20 17 -1.7446 -8.1838 3.9240 21 6 0.1612 -6.4625 3.0527 22 8 0.2379 -7.2440 1.9429 23 6 2.1616 -3.7403 -0.0011 24 1 -0.4850 0.8401 0.0004 25 1 -0.3760 -1.7802 -0.9686 26 1 1.3962 -2.5374 2.2102 27 1 -0.2739 -2.8571 1.5667 28 1 2.3964 -5.9035 1.6843 29 1 2.7125 -4.3337 2.4616 30 1 1.5310 -3.6847 4.3968 31 1 -1.4949 -6.2379 5.9882 32 1 0.8821 -7.9619 2.0111 33 1 2.1778 -4.2727 -0.9521 34 1 3.1583 -3.5539 0.3988 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191919198.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:11 Heat of formation + Delta-G solvation = -41.162184 kcal Electronic energy + Delta-G solvation = -22004.592828 eV Core-core repulsion = 18376.665213 eV Total energy + Delta-G solvation = -3627.927615 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.29195 -38.77614 -37.25458 -36.67047 -36.07243 -34.42150 -32.14061 -31.88625 -29.77742 -28.09084 -25.83431 -25.08622 -23.05291 -22.84475 -21.04819 -18.67066 -18.44660 -17.34184 -16.71347 -16.55775 -15.66015 -15.11338 -15.03355 -14.66052 -14.17346 -14.08356 -13.72973 -13.56843 -12.90496 -12.77032 -12.37724 -12.29172 -12.04846 -11.81298 -11.45350 -11.34262 -11.20110 -11.05240 -11.01857 -10.77717 -10.73010 -10.50010 -10.31736 -10.05737 -9.42269 -8.92125 -8.64402 -8.57052 -8.20870 -7.82267 -6.26796 -4.37316 0.81551 0.91754 1.71284 2.17660 3.19752 3.20770 3.25908 3.27777 3.98207 4.24349 4.49421 4.78940 4.85164 4.98398 5.01903 5.16045 5.36044 5.55265 5.65373 5.80061 5.90851 5.95223 5.99383 6.22010 6.28776 6.33703 6.39301 6.67279 7.02723 7.13217 7.33226 7.55148 7.75195 7.92061 7.99236 8.64151 9.32947 9.65995 10.78905 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.015120 B = 0.004107 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.379462 B = 6816.171135 C = 7966.242444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.902 3.098 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.540 4.540 8 H 0.064 0.936 9 C 0.246 3.754 10 O -0.571 6.571 11 C -0.013 4.013 12 N -0.463 5.463 13 C 0.063 3.937 14 C -0.068 4.068 15 C -0.082 4.082 16 C -0.033 4.033 17 Cl -0.061 7.061 18 C -0.096 4.096 19 C -0.056 4.056 20 Cl -0.053 7.053 21 C 0.145 3.855 22 O -0.467 6.467 23 C 0.008 3.992 24 H 0.272 0.728 25 H 0.389 0.611 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.049 0.951 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.387 0.613 33 H 0.077 0.923 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.213 -12.505 11.556 17.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.210 1.210 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.578 4.578 8 H 0.083 0.917 9 C 0.205 3.795 10 O -0.383 6.383 11 C -0.142 4.142 12 N -0.186 5.186 13 C -0.065 4.065 14 C -0.070 4.070 15 C -0.102 4.102 16 C -0.060 4.060 17 Cl -0.032 7.032 18 C -0.116 4.116 19 C -0.084 4.084 20 Cl -0.024 7.024 21 C 0.098 3.902 22 O -0.276 6.276 23 C -0.120 4.120 24 H 0.082 0.918 25 H 0.244 0.756 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.160 0.840 31 H 0.162 0.838 32 H 0.243 0.757 33 H 0.095 0.905 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.319 -13.098 11.085 17.162 hybrid contribution 0.973 1.602 0.966 2.109 sum 1.292 -11.496 12.051 16.705 Atomic orbital electron populations 1.69342 1.06112 1.27937 1.50297 1.25048 0.94947 0.99596 0.93379 0.86487 0.79579 0.82164 0.78814 1.20999 1.20079 1.19945 1.21610 0.93599 0.90741 1.51849 0.91732 1.19704 0.85147 0.90661 0.84029 1.86047 1.45166 1.50228 1.56865 1.24724 1.00640 0.87262 1.01571 1.68762 1.25768 1.16322 1.07720 1.21486 0.93318 1.00364 0.91345 1.20107 0.97476 0.94298 0.95078 1.21053 0.97949 0.99552 0.91634 1.20627 1.00035 0.94585 0.90752 1.98378 1.97665 1.68570 1.38563 1.20716 0.99836 0.93514 0.97521 1.21162 0.98314 0.93027 0.95884 1.98370 1.66773 1.39279 1.97934 1.17982 0.94310 0.92457 0.85492 1.84984 1.63704 1.44990 1.33937 1.24174 0.94978 0.96631 0.96252 0.91792 0.75614 0.92391 0.91117 0.90212 0.93316 0.83965 0.83822 0.75671 0.90476 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.97 11.09 55.43 0.61 -23.35 16 2 C 0.07 1.89 5.40 -17.82 -0.10 1.80 16 3 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -14.16 8.62 -34.44 -0.30 -14.45 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.25 6.15 1.44 -90.84 -0.13 6.02 16 10 O -0.57 -15.56 13.48 -35.23 -0.47 -16.04 16 11 C -0.01 -0.29 6.71 -2.77 -0.02 -0.31 16 12 N -0.46 -9.37 6.25 -239.69 -1.50 -10.86 16 13 C 0.06 0.99 4.62 -4.97 -0.02 0.97 16 14 C -0.07 -1.00 4.97 -104.48 -0.52 -1.52 16 15 C -0.08 -1.14 9.27 -39.56 -0.37 -1.51 16 16 C -0.03 -0.42 6.32 -39.49 -0.25 -0.67 16 17 Cl -0.06 -0.72 28.95 -51.86 -1.50 -2.22 16 18 C -0.10 -1.16 9.61 -39.54 -0.38 -1.54 16 19 C -0.06 -0.73 6.33 -39.37 -0.25 -0.98 16 20 Cl -0.05 -0.62 28.50 -51.86 -1.48 -2.09 16 21 C 0.14 2.02 6.67 -39.20 -0.26 1.76 16 22 O -0.47 -6.24 12.20 -19.57 -0.24 -6.48 16 23 C 0.01 0.17 7.36 -2.77 -0.02 0.15 16 24 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 25 H 0.39 10.78 6.46 45.56 0.29 11.07 16 26 H 0.06 1.27 7.73 -51.93 -0.40 0.87 16 27 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 28 H 0.08 1.10 7.85 -51.93 -0.41 0.69 16 29 H 0.05 0.74 7.55 -51.93 -0.39 0.34 16 30 H 0.14 1.89 8.03 -52.49 -0.42 1.47 16 31 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 32 H 0.39 3.18 9.06 45.56 0.41 3.59 16 33 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 34 H 0.06 1.26 7.75 -51.93 -0.40 0.85 16 LS Contribution 323.55 15.07 4.88 4.88 Total: -1.00 -28.88 323.55 -9.47 -38.35 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -2.13 Total: 12.96 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -2.61 Total: -10.28 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: -0.88 Total: -34.22 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.71 Total: -22.52 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -2.98 Total: -4.31 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.88 -9.47 -38.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191919198.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.812 kcal (2) G-P(sol) polarization free energy of solvation -28.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds