Wall clock time and date at job start Tue Mar 31 2020 11:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42896 * 112.94066 * 48.43519 * 9 7 2 11 11 C 1.53938 * 113.73589 * 276.72885 * 9 7 2 12 12 N 1.47958 * 86.18121 * 221.92329 * 11 9 7 13 13 C 1.46903 * 111.00224 * 137.58241 * 12 11 9 14 14 C 1.50704 * 109.47018 * 70.63784 * 13 12 11 15 15 C 1.38200 * 120.01246 * 259.72374 * 14 13 12 16 16 C 1.38336 * 120.05719 * 179.77228 * 15 14 13 17 17 Cl 1.73597 * 119.94771 * 180.23244 * 16 15 14 18 18 C 1.38381 * 120.09398 * 0.50375 * 16 15 14 19 19 C 1.38208 * 120.03463 * 359.75043 * 18 16 15 20 20 Cl 1.73601 * 120.03578 * 180.02562 * 19 18 16 21 21 C 1.38651 * 120.01687 * 80.00122 * 14 13 12 22 22 O 1.35946 * 120.04260 * 0.02562 * 21 14 13 23 23 C 1.47957 * 90.76493 * 24.68742 * 12 11 9 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 0.96709 * 114.00030 * 309.66214 * 10 9 7 26 26 H 1.09003 * 113.75836 * 336.24227 * 11 9 7 27 27 H 1.08999 * 113.75908 * 107.60037 * 11 9 7 28 28 H 1.08997 * 109.47135 * 190.63735 * 13 12 11 29 29 H 1.08999 * 109.46521 * 310.64012 * 13 12 11 30 30 H 1.07998 * 119.96626 * 0.02562 * 15 14 13 31 31 H 1.08006 * 119.98646 * 179.77037 * 18 16 15 32 32 H 0.96698 * 114.00370 * 90.00074 * 22 21 14 33 33 H 1.08999 * 113.76060 * 220.99233 * 23 12 11 34 34 H 1.09001 * 113.85944 * 89.64050 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2161 -2.5447 -0.9847 11 6 0.7988 -2.9535 1.3990 12 7 1.2180 -4.3109 0.9854 13 6 1.9380 -4.9927 2.0693 14 6 0.9716 -5.3437 3.1712 15 6 0.8969 -4.5539 4.3028 16 6 0.0068 -4.8726 5.3127 17 17 -0.0890 -3.8750 6.7301 18 6 -0.8032 -5.9886 5.1970 19 6 -0.7279 -6.7841 4.0694 20 17 -1.7446 -8.1838 3.9240 21 6 0.1612 -6.4625 3.0527 22 8 0.2379 -7.2440 1.9429 23 6 2.1616 -3.7403 -0.0011 24 1 -0.4850 0.8401 0.0004 25 1 -0.3760 -1.7802 -0.9686 26 1 1.3962 -2.5374 2.2102 27 1 -0.2739 -2.8571 1.5667 28 1 2.3964 -5.9035 1.6843 29 1 2.7125 -4.3337 2.4616 30 1 1.5310 -3.6847 4.3968 31 1 -1.4949 -6.2379 5.9882 32 1 0.8821 -7.9619 2.0111 33 1 2.1778 -4.2727 -0.9521 34 1 3.1583 -3.5539 0.3988 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191919198.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:11 Heat of formation + Delta-G solvation = -63.139431 kcal Electronic energy + Delta-G solvation = -22005.545833 eV Core-core repulsion = 18376.665213 eV Total energy + Delta-G solvation = -3628.880620 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.46251 -40.33592 -38.24050 -37.64180 -37.09080 -36.21959 -34.09617 -33.21134 -30.83685 -29.60134 -27.51738 -26.81619 -24.51806 -23.87928 -22.31888 -20.45157 -19.51124 -19.21909 -17.80730 -17.63679 -17.11424 -16.84162 -16.52044 -15.96803 -15.66670 -15.55180 -15.19985 -14.61803 -14.21660 -13.99183 -13.84669 -13.60469 -13.32875 -13.29344 -13.24819 -12.81404 -12.61125 -12.48801 -12.28884 -12.21879 -12.04687 -11.95268 -11.85222 -11.51620 -11.19047 -10.62503 -10.15335 -9.93737 -9.57607 -9.50369 -8.22502 -6.40788 -0.19357 -0.11086 0.73648 1.19818 1.43608 1.45332 1.53084 2.17922 2.38478 2.98655 3.02668 3.22784 3.44210 3.84167 3.96048 4.01228 4.14412 4.24281 4.28180 4.49194 4.50961 4.58459 4.63889 4.75241 4.92474 4.95123 5.13509 5.17209 5.31233 5.41433 5.51658 5.76705 6.00661 6.33245 6.64846 6.73935 7.32518 7.55336 8.81895 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.015120 B = 0.004107 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.379462 B = 6816.171135 C = 7966.242444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.028 3.972 3 Si 0.965 3.035 4 H -0.283 1.283 5 H -0.267 1.267 6 H -0.272 1.272 7 C -0.559 4.559 8 H 0.067 0.933 9 C 0.215 3.785 10 O -0.587 6.587 11 C 0.005 3.995 12 N -0.470 5.470 13 C 0.065 3.935 14 C -0.086 4.086 15 C -0.087 4.087 16 C -0.039 4.039 17 Cl -0.052 7.052 18 C -0.088 4.088 19 C -0.063 4.063 20 Cl -0.042 7.042 21 C 0.143 3.857 22 O -0.482 6.482 23 C 0.019 3.981 24 H 0.273 0.727 25 H 0.381 0.619 26 H 0.062 0.938 27 H 0.042 0.958 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.143 0.857 31 H 0.165 0.835 32 H 0.408 0.592 33 H 0.075 0.925 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.017 -13.032 12.597 18.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.172 4.172 3 Si 0.790 3.210 4 H -0.209 1.209 5 H -0.192 1.192 6 H -0.197 1.197 7 C -0.597 4.597 8 H 0.085 0.915 9 C 0.174 3.826 10 O -0.398 6.398 11 C -0.125 4.125 12 N -0.192 5.192 13 C -0.063 4.063 14 C -0.087 4.087 15 C -0.107 4.107 16 C -0.066 4.066 17 Cl -0.024 7.024 18 C -0.107 4.107 19 C -0.091 4.091 20 Cl -0.013 7.013 21 C 0.096 3.904 22 O -0.295 6.295 23 C -0.109 4.109 24 H 0.083 0.917 25 H 0.235 0.765 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.161 0.839 31 H 0.182 0.818 32 H 0.268 0.732 33 H 0.094 0.906 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.145 -13.659 12.132 18.305 hybrid contribution 0.695 1.674 0.666 1.931 sum 1.839 -11.985 12.798 17.630 Atomic orbital electron populations 1.69434 1.07308 1.28613 1.50762 1.25798 0.95692 1.02695 0.92992 0.85505 0.78340 0.78224 0.78945 1.20855 1.19235 1.19731 1.21912 0.93913 0.91771 1.52153 0.91460 1.20163 0.85565 0.92059 0.84798 1.86030 1.45751 1.49905 1.58120 1.24376 0.98814 0.88963 1.00348 1.68627 1.26553 1.14914 1.09114 1.21512 0.93448 1.00842 0.90469 1.20026 0.98294 0.95204 0.95210 1.21122 0.98242 0.99483 0.91840 1.20673 1.00012 0.94974 0.90917 1.98381 1.97628 1.68390 1.37951 1.20957 0.99409 0.92716 0.97661 1.21222 0.98371 0.93600 0.95917 1.98372 1.66386 1.38652 1.97922 1.18056 0.94236 0.92400 0.85682 1.84922 1.64744 1.45832 1.33970 1.24088 0.95336 0.94696 0.96791 0.91746 0.76482 0.92020 0.93942 0.88003 0.92508 0.83919 0.81792 0.73212 0.90620 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.81 11.09 21.45 0.24 -49.57 16 2 C 0.03 1.46 5.40 84.66 0.46 1.91 16 3 Si 0.96 41.06 29.54 68.60 2.03 43.09 16 4 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.56 -29.30 8.62 25.60 0.22 -29.08 16 8 H 0.07 3.39 7.81 -2.91 -0.02 3.36 16 9 C 0.22 10.81 1.44 -10.89 -0.02 10.79 16 10 O -0.59 -32.68 13.48 -148.98 -2.01 -34.69 16 11 C 0.00 0.21 6.71 86.41 0.58 0.79 16 12 N -0.47 -18.62 6.25 -915.44 -5.72 -24.35 16 13 C 0.06 1.94 4.62 85.56 0.40 2.33 16 14 C -0.09 -2.40 4.97 -19.77 -0.10 -2.50 16 15 C -0.09 -2.32 9.27 22.28 0.21 -2.12 16 16 C -0.04 -0.94 6.32 22.33 0.14 -0.80 16 17 Cl -0.05 -1.17 28.95 -2.72 -0.08 -1.25 16 18 C -0.09 -1.97 9.61 22.30 0.21 -1.75 16 19 C -0.06 -1.53 6.33 22.41 0.14 -1.39 16 20 Cl -0.04 -0.92 28.50 -2.72 -0.08 -1.00 16 21 C 0.14 3.80 6.67 22.51 0.15 3.95 16 22 O -0.48 -12.10 12.20 -92.95 -1.13 -13.23 16 23 C 0.02 0.80 7.36 86.41 0.64 1.43 16 24 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 25 H 0.38 21.84 6.46 -74.05 -0.48 21.36 16 26 H 0.06 2.70 7.73 -2.39 -0.02 2.68 16 27 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.10 2.56 7.85 -2.39 -0.02 2.54 16 29 H 0.06 1.61 7.55 -2.39 -0.02 1.59 16 30 H 0.14 3.68 8.03 -2.91 -0.02 3.66 16 31 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 32 H 0.41 5.89 9.06 -74.06 -0.67 5.22 16 33 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 34 H 0.08 3.12 7.75 -2.39 -0.02 3.10 16 Total: -1.00 -60.95 323.55 -3.71 -64.66 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: 0.02 Total: 32.77 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 3.03 Total: -16.44 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: -5.49 Total: -73.92 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -3.14 Total: -47.92 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Atomic # 17 Polarization: -2.09 SS G_CDS: -0.16 Total: -2.24 kcal Total: -60.95 -3.71 -64.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191919198.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.518 kcal (2) G-P(sol) polarization free energy of solvation -60.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds