Wall clock time and date at job start Tue Mar 31 2020 11:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99869 * 2 1 4 4 H 1.48496 * 109.47180 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47084 * 120.00052 * 3 2 1 6 6 H 1.48501 * 109.46867 * 239.99627 * 3 2 1 7 7 C 1.37880 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99971 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00052 * 359.97438 * 7 2 1 10 10 O 1.42901 * 112.94172 * 50.33602 * 9 7 2 11 11 C 1.53940 * 113.74429 * 278.74524 * 9 7 2 12 12 N 1.47816 * 86.03510 * 222.08516 * 11 9 7 13 13 C 1.34776 * 134.45463 * 204.64397 * 12 11 9 14 14 O 1.21584 * 119.99902 * 174.50447 * 13 12 11 15 15 C 1.47576 * 120.00351 * 354.50744 * 13 12 11 16 16 C 1.39747 * 120.13295 * 335.34892 * 15 13 12 17 17 C 1.37747 * 119.92228 * 179.97438 * 16 15 13 18 18 C 1.38728 * 120.20533 * 359.97438 * 17 16 15 19 19 F 1.35108 * 119.86160 * 179.97438 * 18 17 16 20 20 C 1.38582 * 120.27685 * 0.02562 * 18 17 16 21 21 Cl 1.73603 * 119.96677 * 179.97438 * 20 18 17 22 22 C 1.38301 * 120.07036 * 359.74484 * 20 18 17 23 23 F 1.35098 * 120.09812 * 180.27181 * 22 20 18 24 24 C 1.47572 * 91.05014 * 24.54783 * 12 11 9 25 25 H 0.97004 * 119.99869 * 0.02562 * 1 2 3 26 26 H 0.96698 * 114.00161 * 309.66776 * 10 9 7 27 27 H 1.08998 * 113.76990 * 336.34679 * 11 9 7 28 28 H 1.09004 * 113.77170 * 107.74539 * 11 9 7 29 29 H 1.07998 * 120.03531 * 359.97438 * 16 15 13 30 30 H 1.08003 * 119.89226 * 180.02562 * 17 16 15 31 31 H 1.09002 * 113.76706 * 221.14941 * 24 12 11 32 32 H 1.08999 * 113.77159 * 89.75698 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 8 0.2447 -2.5622 -1.0109 11 6 0.7561 -2.9279 1.3949 12 7 1.1919 -4.2891 1.0179 13 6 0.8426 -5.5326 1.4029 14 8 1.3142 -6.4994 0.8362 15 6 -0.1122 -5.7207 2.5123 16 6 -0.2652 -4.7265 3.4824 17 6 -1.1581 -4.9065 4.5158 18 6 -1.9067 -6.0717 4.5964 19 9 -2.7801 -6.2411 5.6132 20 6 -1.7617 -7.0630 3.6389 21 17 -2.7021 -8.5182 3.7481 22 6 -0.8720 -6.8923 2.5939 23 9 -0.7342 -7.8560 1.6572 24 6 2.1608 -3.7401 0.0496 25 1 -0.4850 0.8401 -0.0004 26 1 -0.3474 -1.7978 -1.0252 27 1 1.3273 -2.4955 2.2163 28 1 -0.3216 -2.8312 1.5273 29 1 0.3159 -3.8183 3.4220 30 1 -1.2763 -4.1376 5.2650 31 1 2.2026 -4.2907 -0.8902 32 1 3.1455 -3.5467 0.4749 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191953382.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:27 Heat of formation + Delta-G solvation = -126.413159 kcal Electronic energy + Delta-G solvation = -23979.826636 eV Core-core repulsion = 19796.405581 eV Total energy + Delta-G solvation = -4183.421055 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.042 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.34554 -50.28999 -41.53770 -39.95589 -38.87688 -37.84761 -35.85332 -34.12075 -32.57693 -31.92254 -30.10322 -27.27059 -27.11580 -25.00110 -24.30322 -22.04430 -20.55699 -19.44674 -19.35815 -18.77569 -18.39944 -17.58060 -17.34490 -17.06371 -16.95384 -16.63696 -16.28868 -16.16501 -15.95318 -15.58006 -15.06702 -14.59990 -14.39205 -14.10369 -13.96253 -13.87107 -13.72314 -13.39214 -13.01397 -12.85149 -12.74464 -12.72651 -12.36392 -12.23164 -12.18212 -11.49480 -11.06396 -10.62143 -10.28406 -10.20110 -10.14192 -9.61327 -8.23285 -6.39924 -0.80909 -0.47524 0.54656 1.39583 1.51779 1.55492 1.61146 1.74120 2.17965 2.32397 2.44275 2.92356 2.98280 3.09056 3.33818 3.53695 3.74195 3.96298 4.15548 4.26629 4.42380 4.49840 4.59977 4.62942 4.74259 4.76665 4.89402 4.92709 5.23149 5.27564 5.76200 5.95794 6.65834 6.68654 6.93858 7.33579 7.47122 8.82497 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.021973 B = 0.003660 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.970336 B = 7649.203314 C = 8422.821762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.039 3.961 3 Si 0.964 3.036 4 H -0.285 1.285 5 H -0.264 1.264 6 H -0.280 1.280 7 C -0.556 4.556 8 H 0.074 0.926 9 C 0.217 3.783 10 O -0.589 6.589 11 C 0.088 3.912 12 N -0.624 5.624 13 C 0.566 3.434 14 O -0.584 6.584 15 C -0.173 4.173 16 C -0.015 4.015 17 C -0.131 4.131 18 C 0.167 3.833 19 F -0.109 7.109 20 C -0.133 4.133 21 Cl -0.023 7.023 22 C 0.172 3.828 23 F -0.117 7.117 24 C 0.112 3.888 25 H 0.276 0.724 26 H 0.388 0.612 27 H 0.112 0.888 28 H 0.076 0.924 29 H 0.174 0.826 30 H 0.202 0.798 31 H 0.057 0.943 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.028 -5.250 12.668 14.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.162 4.162 3 Si 0.790 3.210 4 H -0.211 1.211 5 H -0.189 1.189 6 H -0.205 1.205 7 C -0.594 4.594 8 H 0.092 0.908 9 C 0.176 3.824 10 O -0.401 6.401 11 C -0.034 4.034 12 N -0.356 5.356 13 C 0.356 3.644 14 O -0.467 6.467 15 C -0.178 4.178 16 C -0.033 4.033 17 C -0.150 4.150 18 C 0.146 3.854 19 F -0.087 7.087 20 C -0.162 4.162 21 Cl 0.006 6.994 22 C 0.150 3.850 23 F -0.095 7.095 24 C -0.009 4.009 25 H 0.085 0.915 26 H 0.242 0.758 27 H 0.130 0.870 28 H 0.094 0.906 29 H 0.191 0.809 30 H 0.220 0.780 31 H 0.076 0.924 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.829 -6.556 12.304 14.458 hybrid contribution -0.195 0.619 -0.376 0.750 sum -4.024 -5.936 11.928 13.918 Atomic orbital electron populations 1.69448 1.06999 1.28970 1.49980 1.25654 0.95661 1.02256 0.92652 0.85510 0.78308 0.78356 0.78862 1.21079 1.18913 1.20545 1.21668 0.94208 0.90518 1.52971 0.90801 1.20135 0.85876 0.91705 0.84657 1.86073 1.47562 1.49718 1.56720 1.24405 1.00717 0.76300 1.01944 1.50119 1.39786 1.04639 1.41052 1.17882 0.81790 0.81900 0.82784 1.90765 1.58132 1.40154 1.57650 1.20024 1.01710 0.95983 1.00047 1.21652 0.94816 0.97020 0.89831 1.21531 0.95592 0.96860 1.01004 1.17332 0.90068 0.93325 0.84644 1.91608 1.65863 1.95401 1.55797 1.20844 1.02268 0.93857 0.99185 1.98401 1.70163 1.33049 1.97805 1.17184 0.95117 0.86038 0.86633 1.91587 1.94161 1.61001 1.62742 1.23582 0.94222 0.91753 0.91382 0.91456 0.75771 0.87014 0.90588 0.80896 0.78050 0.92427 0.86892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -42.61 11.20 21.45 0.24 -42.37 16 2 C 0.04 1.77 5.40 84.66 0.46 2.23 16 3 Si 0.96 36.58 29.54 68.60 2.03 38.61 16 4 H -0.29 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 6 H -0.28 -10.85 7.11 99.48 0.71 -10.15 16 7 C -0.56 -25.41 8.61 25.60 0.22 -25.19 16 8 H 0.07 3.27 7.81 -2.91 -0.02 3.25 16 9 C 0.22 9.57 1.40 -10.88 -0.02 9.56 16 10 O -0.59 -29.15 13.48 -148.98 -2.01 -31.15 16 11 C 0.09 3.20 5.68 86.44 0.49 3.69 16 12 N -0.62 -24.19 3.58 -843.45 -3.02 -27.21 16 13 C 0.57 22.53 7.78 86.71 0.67 23.21 16 14 O -0.58 -27.54 16.46 -3.98 -0.07 -27.61 16 15 C -0.17 -5.44 5.82 -20.05 -0.12 -5.55 16 16 C -0.01 -0.33 8.82 22.52 0.20 -0.13 16 17 C -0.13 -2.20 10.00 22.27 0.22 -1.98 16 18 C 0.17 3.42 7.28 22.47 0.16 3.58 16 19 F -0.11 -2.09 16.82 44.97 0.76 -1.33 16 20 C -0.13 -3.39 6.32 22.37 0.14 -3.25 16 21 Cl -0.02 -0.56 28.26 -2.72 -0.08 -0.64 16 22 C 0.17 5.37 7.22 22.68 0.16 5.53 16 23 F -0.12 -4.26 15.42 44.97 0.69 -3.57 16 24 C 0.11 4.56 8.23 86.49 0.71 5.27 16 25 H 0.28 12.30 8.31 -92.71 -0.77 11.53 16 26 H 0.39 19.34 6.60 -74.06 -0.49 18.85 16 27 H 0.11 3.51 7.70 -2.39 -0.02 3.49 16 28 H 0.08 2.74 7.86 -2.38 -0.02 2.72 16 29 H 0.17 3.45 5.53 -2.91 -0.02 3.44 16 30 H 0.20 1.72 8.06 -2.91 -0.02 1.70 16 31 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.11 4.00 8.09 -2.39 -0.02 3.98 16 Total: -1.00 -58.59 306.75 2.58 -56.01 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.72 Total: 22.30 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: 3.31 Total: 16.96 kcal Atomic # 7 Polarization: -66.80 SS G_CDS: -2.78 Total: -69.58 kcal Atomic # 8 Polarization: -56.69 SS G_CDS: -2.07 Total: -58.76 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 1.45 Total: -4.90 kcal Atomic # 14 Polarization: 36.58 SS G_CDS: 2.03 Total: 38.61 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -0.08 Total: -0.64 kcal Total: -58.59 2.58 -56.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191953382.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.406 kcal (2) G-P(sol) polarization free energy of solvation -58.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds