Wall clock time and date at job start Tue Mar 31 2020 11:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34234 * 116.99770 * 2 1 4 4 O 1.20820 * 119.99932 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99894 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47149 * 180.02562 * 5 3 2 7 7 C 1.37090 * 120.00044 * 263.10504 * 6 5 3 8 8 H 1.08005 * 120.00342 * 142.05587 * 7 6 5 9 9 C 1.38954 * 119.99930 * 322.05449 * 7 6 5 10 10 N 1.31414 * 119.99894 * 158.26477 * 9 7 6 11 11 Si 1.86801 * 120.00204 * 338.26657 * 9 7 6 12 12 H 1.48491 * 109.47203 * 95.91160 * 11 9 7 13 13 H 1.48503 * 109.47012 * 215.91609 * 11 9 7 14 14 H 1.48505 * 109.46594 * 335.90934 * 11 9 7 15 15 C 1.34773 * 119.99895 * 83.10168 * 6 5 3 16 16 O 1.21298 * 120.00095 * 0.02562 * 15 6 5 17 17 C 1.50704 * 120.00166 * 180.02562 * 15 6 5 18 18 C 1.50694 * 109.47278 * 179.97438 * 17 15 6 19 19 C 1.33351 * 125.18675 * 89.99979 * 18 17 15 20 20 C 1.38479 * 114.92867 * 179.97438 * 19 18 17 21 21 C 1.33500 * 114.88157 * 0.02562 * 20 19 18 22 22 Cl 1.73605 * 125.20693 * 179.97438 * 21 20 19 23 23 S 1.75878 * 125.19006 * 270.00090 * 18 17 15 24 24 H 1.09001 * 109.47391 * 59.99629 * 1 2 3 25 25 H 1.09002 * 109.46673 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46639 * 299.99204 * 1 2 3 27 27 H 1.09001 * 109.47353 * 60.00745 * 5 3 2 28 28 H 1.08995 * 109.47360 * 300.00527 * 5 3 2 29 29 H 0.97005 * 119.99846 * 180.02562 * 10 9 7 30 30 H 1.09001 * 109.46742 * 59.99712 * 17 15 6 31 31 H 1.09002 * 109.46849 * 300.00518 * 17 15 6 32 32 H 1.07990 * 122.53827 * 0.02562 * 19 18 17 33 33 H 1.07999 * 122.55668 * 179.72742 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6799 0.0002 7 6 4.3122 3.2976 -1.1782 8 1 4.0336 4.3277 -1.3447 9 6 5.0056 2.5983 -2.1585 10 7 4.9580 2.9988 -3.4092 11 14 6.0054 1.0889 -1.6986 12 1 5.1930 -0.1323 -1.9300 13 1 7.2315 1.0337 -2.5347 14 1 6.3867 1.1657 -0.2654 15 6 4.0387 3.3650 1.1593 16 8 3.7467 2.8184 2.2020 17 6 4.4654 4.8104 1.1601 18 6 4.4443 5.3397 2.5708 19 6 5.4712 5.3032 3.4207 20 6 5.2175 5.8516 4.6667 21 6 3.9828 6.3331 4.8276 22 17 3.3789 7.0755 6.2760 23 16 3.0615 6.0998 3.3476 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5137 0.8901 27 1 3.9557 0.7812 -0.8909 28 1 3.9564 0.7806 0.8890 29 1 5.4418 2.5104 -4.0936 30 1 3.7797 5.3920 0.5439 31 1 5.4746 4.8915 0.7562 32 1 6.4286 4.8788 3.1571 33 1 5.9602 5.8829 5.4502 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193671514.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:44 Heat of formation + Delta-G solvation = -75.202000 kcal Electronic energy + Delta-G solvation = -21893.252054 eV Core-core repulsion = 18265.892068 eV Total energy + Delta-G solvation = -3627.359986 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.032 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.08343 -38.90091 -37.67615 -36.49958 -35.91797 -34.94338 -32.16029 -31.74666 -29.04881 -27.10565 -26.08031 -24.86656 -23.08297 -21.00698 -19.49501 -19.05267 -17.83539 -17.33600 -16.80797 -16.63564 -15.90222 -15.64150 -15.44684 -15.15233 -14.38069 -14.05406 -13.47473 -13.39612 -13.16923 -13.02024 -12.84153 -12.63238 -12.36951 -12.30011 -11.85809 -11.62787 -11.34783 -11.26783 -11.07036 -10.82597 -10.66973 -10.49971 -10.38566 -10.20471 -9.96631 -9.43655 -8.92069 -8.33005 -8.25176 -8.08489 -6.66078 -4.29121 1.02963 1.30861 2.06934 2.38265 2.80762 2.82614 2.89509 2.97222 3.12205 3.14615 3.63466 3.93047 4.19492 4.77716 5.06304 5.33396 5.40277 5.42040 5.44589 5.54354 5.61235 5.74904 5.76018 5.85739 5.95782 6.12971 6.21074 6.38278 6.59828 6.80436 7.03475 7.84737 8.04527 8.33883 8.73142 9.08318 9.41003 10.43947 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.015170 B = 0.004284 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.296491 B = 6534.474348 C = 7681.383552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.369 6.369 3 C 0.450 3.550 4 O -0.490 6.490 5 C 0.110 3.890 6 N -0.448 5.448 7 C -0.350 4.350 8 H 0.109 0.891 9 C 0.069 3.931 10 N -0.848 5.848 11 Si 0.861 3.139 12 H -0.269 1.269 13 H -0.279 1.279 14 H -0.255 1.255 15 C 0.498 3.502 16 O -0.579 6.579 17 C -0.054 4.054 18 C -0.123 4.123 19 C -0.138 4.138 20 C -0.109 4.109 21 C -0.164 4.164 22 Cl -0.030 7.030 23 S 0.156 5.844 24 H 0.059 0.941 25 H 0.095 0.905 26 H 0.058 0.942 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.278 0.722 30 H 0.102 0.898 31 H 0.118 0.882 32 H 0.146 0.854 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.907 1.384 9.391 9.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C 0.291 3.709 4 O -0.375 6.375 5 C -0.015 4.015 6 N -0.170 5.170 7 C -0.477 4.477 8 H 0.126 0.874 9 C -0.140 4.140 10 N -0.481 5.481 11 Si 0.687 3.313 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.178 1.178 15 C 0.287 3.713 16 O -0.462 6.462 17 C -0.096 4.096 18 C -0.241 4.241 19 C -0.167 4.167 20 C -0.142 4.142 21 C -0.308 4.308 22 Cl -0.002 7.002 23 S 0.419 5.581 24 H 0.078 0.922 25 H 0.113 0.887 26 H 0.077 0.923 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.089 0.911 30 H 0.120 0.880 31 H 0.136 0.864 32 H 0.164 0.836 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.771 1.832 9.383 9.954 hybrid contribution 1.596 -1.058 0.415 1.960 sum -1.175 0.773 9.799 9.899 Atomic orbital electron populations 1.23141 0.77484 1.02863 1.02271 1.86520 1.22725 1.34481 1.84908 1.24722 0.92823 0.81220 0.72181 1.90606 1.66598 1.36289 1.44015 1.21373 0.86909 0.88336 1.04895 1.43354 1.58104 1.08308 1.07209 1.19109 1.36896 1.00106 0.91560 0.87389 1.25373 0.95997 0.98054 0.94590 1.69767 1.38076 1.40485 0.99796 0.87152 0.81016 0.82652 0.80503 1.19588 1.20553 1.17846 1.20140 0.79847 0.88464 0.82860 1.90601 1.53178 1.70724 1.31743 1.20011 1.05600 0.94107 0.89870 1.24252 0.95759 1.03733 1.00388 1.19870 1.00783 1.03703 0.92364 1.20083 0.95395 1.00138 0.98603 1.25130 0.99004 1.12131 0.94515 1.98330 1.87481 1.80707 1.33646 1.84385 1.14578 1.56914 1.02228 0.92193 0.88705 0.92298 0.87315 0.87319 0.91127 0.87999 0.86407 0.83639 0.83891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.59 16 2 O -0.37 -6.80 10.57 -39.27 -0.41 -7.21 16 3 C 0.45 9.75 7.98 36.01 0.29 10.04 16 4 O -0.49 -11.85 16.01 -18.75 -0.30 -12.15 16 5 C 0.11 2.38 4.49 -5.19 -0.02 2.35 16 6 N -0.45 -10.34 1.74 -116.09 -0.20 -10.55 16 7 C -0.35 -8.56 9.05 -14.94 -0.14 -8.69 16 8 H 0.11 2.76 7.24 -52.48 -0.38 2.38 16 9 C 0.07 1.69 5.27 -17.47 -0.09 1.60 16 10 N -0.85 -21.98 13.96 55.50 0.77 -21.21 16 11 Si 0.86 18.29 25.01 -169.99 -4.25 14.04 16 12 H -0.27 -5.48 6.71 56.52 0.38 -5.10 16 13 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 14 H -0.25 -5.35 7.11 56.52 0.40 -4.95 16 15 C 0.50 11.04 7.37 -10.99 -0.08 10.96 16 16 O -0.58 -13.88 15.73 5.54 0.09 -13.79 16 17 C -0.05 -1.00 4.89 -29.04 -0.14 -1.14 16 18 C -0.12 -2.08 5.00 -36.02 -0.18 -2.26 16 19 C -0.14 -2.10 10.05 -41.20 -0.41 -2.51 16 20 C -0.11 -1.53 10.13 -41.15 -0.42 -1.94 16 21 C -0.16 -2.40 7.10 29.07 0.21 -2.19 16 22 Cl -0.03 -0.38 29.29 -51.86 -1.52 -1.90 16 23 S 0.16 2.49 23.33 -107.50 -2.51 -0.02 16 24 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 25 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 27 H 0.11 2.31 3.67 -51.93 -0.19 2.12 16 28 H 0.11 2.18 7.64 -51.93 -0.40 1.78 16 29 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 30 H 0.10 1.83 7.67 -51.93 -0.40 1.44 16 31 H 0.12 1.98 8.10 -51.93 -0.42 1.56 16 32 H 0.15 1.97 8.06 -52.49 -0.42 1.54 16 33 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 321.56 15.07 4.85 4.85 Total: -1.00 -29.46 321.56 -6.47 -35.93 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -3.06 Total: 4.24 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: 0.08 Total: 7.78 kcal Atomic # 7 Polarization: -32.33 SS G_CDS: 0.57 Total: -31.75 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.63 Total: -33.16 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -4.25 Total: 14.04 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -2.51 Total: -0.02 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.52 Total: -1.90 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.46 -6.47 -35.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193671514.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.273 kcal (2) G-P(sol) polarization free energy of solvation -29.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds