Wall clock time and date at job start Tue Mar 31 2020 11:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34234 * 116.99770 * 2 1 4 4 O 1.20820 * 119.99932 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99894 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47149 * 180.02562 * 5 3 2 7 7 C 1.37090 * 120.00044 * 263.10504 * 6 5 3 8 8 H 1.08005 * 120.00342 * 142.05587 * 7 6 5 9 9 C 1.38954 * 119.99930 * 322.05449 * 7 6 5 10 10 N 1.31414 * 119.99894 * 158.26477 * 9 7 6 11 11 Si 1.86801 * 120.00204 * 338.26657 * 9 7 6 12 12 H 1.48491 * 109.47203 * 95.91160 * 11 9 7 13 13 H 1.48503 * 109.47012 * 215.91609 * 11 9 7 14 14 H 1.48505 * 109.46594 * 335.90934 * 11 9 7 15 15 C 1.34773 * 119.99895 * 83.10168 * 6 5 3 16 16 O 1.21298 * 120.00095 * 0.02562 * 15 6 5 17 17 C 1.50704 * 120.00166 * 180.02562 * 15 6 5 18 18 C 1.50694 * 109.47278 * 179.97438 * 17 15 6 19 19 C 1.33351 * 125.18675 * 89.99979 * 18 17 15 20 20 C 1.38479 * 114.92867 * 179.97438 * 19 18 17 21 21 C 1.33500 * 114.88157 * 0.02562 * 20 19 18 22 22 Cl 1.73605 * 125.20693 * 179.97438 * 21 20 19 23 23 S 1.75878 * 125.19006 * 270.00090 * 18 17 15 24 24 H 1.09001 * 109.47391 * 59.99629 * 1 2 3 25 25 H 1.09002 * 109.46673 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46639 * 299.99204 * 1 2 3 27 27 H 1.09001 * 109.47353 * 60.00745 * 5 3 2 28 28 H 1.08995 * 109.47360 * 300.00527 * 5 3 2 29 29 H 0.97005 * 119.99846 * 180.02562 * 10 9 7 30 30 H 1.09001 * 109.46742 * 59.99712 * 17 15 6 31 31 H 1.09002 * 109.46849 * 300.00518 * 17 15 6 32 32 H 1.07990 * 122.53827 * 0.02562 * 19 18 17 33 33 H 1.07999 * 122.55668 * 179.72742 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6799 0.0002 7 6 4.3122 3.2976 -1.1782 8 1 4.0336 4.3277 -1.3447 9 6 5.0056 2.5983 -2.1585 10 7 4.9580 2.9988 -3.4092 11 14 6.0054 1.0889 -1.6986 12 1 5.1930 -0.1323 -1.9300 13 1 7.2315 1.0337 -2.5347 14 1 6.3867 1.1657 -0.2654 15 6 4.0387 3.3650 1.1593 16 8 3.7467 2.8184 2.2020 17 6 4.4654 4.8104 1.1601 18 6 4.4443 5.3397 2.5708 19 6 5.4712 5.3032 3.4207 20 6 5.2175 5.8516 4.6667 21 6 3.9828 6.3331 4.8276 22 17 3.3789 7.0755 6.2760 23 16 3.0615 6.0998 3.3476 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5137 0.8901 27 1 3.9557 0.7812 -0.8909 28 1 3.9564 0.7806 0.8890 29 1 5.4418 2.5104 -4.0936 30 1 3.7797 5.3920 0.5439 31 1 5.4746 4.8915 0.7562 32 1 6.4286 4.8788 3.1571 33 1 5.9602 5.8829 5.4502 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193671514.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:43 Heat of formation + Delta-G solvation = -91.633765 kcal Electronic energy + Delta-G solvation = -21893.964589 eV Core-core repulsion = 18265.892068 eV Total energy + Delta-G solvation = -3628.072520 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.032 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.74462 -40.53143 -38.89772 -37.69581 -37.45669 -36.72686 -34.03122 -33.15735 -30.58727 -28.38600 -27.56865 -26.58287 -24.34276 -22.58777 -21.13463 -20.37315 -19.43839 -18.96702 -18.31296 -18.20297 -17.47303 -17.10082 -17.02899 -16.60275 -15.94840 -15.73695 -14.86928 -14.73095 -14.63460 -14.43645 -14.33821 -14.00400 -13.82388 -13.73889 -13.42216 -13.00837 -12.86471 -12.68899 -12.41541 -12.39298 -12.01564 -11.94167 -11.83556 -11.69919 -11.66116 -11.19628 -10.67273 -9.93994 -9.53568 -9.47444 -8.53832 -6.20992 -0.17415 0.13266 0.87473 1.12279 1.21977 1.23661 1.33683 1.44053 1.50364 1.67666 1.95866 2.17001 2.54417 2.95204 3.74562 3.86615 3.92427 4.09450 4.20720 4.28168 4.29157 4.34878 4.38953 4.61975 4.62896 4.76602 4.96728 5.18806 5.20101 5.29189 5.41391 6.01363 6.12888 6.70031 6.87849 7.25313 7.61760 8.59658 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.015170 B = 0.004284 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.296491 B = 6534.474348 C = 7681.383552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.451 3.549 4 O -0.525 6.525 5 C 0.101 3.899 6 N -0.458 5.458 7 C -0.351 4.351 8 H 0.084 0.916 9 C 0.033 3.967 10 N -0.888 5.888 11 Si 0.913 3.087 12 H -0.252 1.252 13 H -0.277 1.277 14 H -0.249 1.249 15 C 0.492 3.508 16 O -0.598 6.598 17 C -0.047 4.047 18 C -0.150 4.150 19 C -0.128 4.128 20 C -0.107 4.107 21 C -0.162 4.162 22 Cl -0.011 7.011 23 S 0.127 5.873 24 H 0.057 0.943 25 H 0.141 0.859 26 H 0.057 0.943 27 H 0.114 0.886 28 H 0.125 0.875 29 H 0.283 0.717 30 H 0.096 0.904 31 H 0.130 0.870 32 H 0.164 0.836 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.154 0.175 10.849 10.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.293 3.707 4 O -0.413 6.413 5 C -0.023 4.023 6 N -0.179 5.179 7 C -0.478 4.478 8 H 0.101 0.899 9 C -0.173 4.173 10 N -0.523 5.523 11 Si 0.736 3.264 12 H -0.178 1.178 13 H -0.202 1.202 14 H -0.173 1.173 15 C 0.283 3.717 16 O -0.483 6.483 17 C -0.088 4.088 18 C -0.268 4.268 19 C -0.158 4.158 20 C -0.140 4.140 21 C -0.306 4.306 22 Cl 0.017 6.983 23 S 0.390 5.610 24 H 0.076 0.924 25 H 0.159 0.841 26 H 0.076 0.924 27 H 0.131 0.869 28 H 0.143 0.857 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.148 0.852 32 H 0.181 0.819 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.031 0.602 10.846 11.051 hybrid contribution 1.255 -0.670 0.043 1.423 sum -0.776 -0.067 10.888 10.916 Atomic orbital electron populations 1.23553 0.74906 1.05871 1.02163 1.86490 1.25138 1.32457 1.84091 1.24702 0.92990 0.81608 0.71419 1.90591 1.67324 1.37564 1.45817 1.21503 0.87293 0.87760 1.05783 1.43428 1.58572 1.08977 1.06953 1.18934 1.37199 0.99494 0.92155 0.89864 1.25935 0.96434 1.00824 0.94131 1.69841 1.39275 1.42399 1.00821 0.86316 0.79713 0.79988 0.80391 1.17767 1.20242 1.17267 1.20748 0.78969 0.89695 0.82275 1.90568 1.53933 1.71527 1.32239 1.19911 1.05923 0.91732 0.91275 1.24154 0.96760 1.05794 1.00124 1.20197 1.00908 1.02331 0.92352 1.20374 0.95709 0.99120 0.98771 1.25236 0.98917 1.11940 0.94497 1.98338 1.87349 1.80344 1.32260 1.84429 1.15311 1.57515 1.03755 0.92422 0.84121 0.92399 0.86905 0.85727 0.90687 0.88556 0.85203 0.81892 0.80867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.56 113.37 1.20 1.94 16 2 O -0.37 -12.88 10.57 -51.45 -0.54 -13.42 16 3 C 0.45 19.33 7.98 71.24 0.57 19.90 16 4 O -0.52 -25.67 16.01 21.98 0.35 -25.31 16 5 C 0.10 4.29 4.49 85.63 0.38 4.67 16 6 N -0.46 -21.14 1.74 -639.59 -1.11 -22.25 16 7 C -0.35 -17.44 9.05 84.04 0.76 -16.68 16 8 H 0.08 4.45 7.24 -2.91 -0.02 4.43 16 9 C 0.03 1.60 5.27 84.93 0.45 2.05 16 10 N -0.89 -46.61 13.96 21.66 0.30 -46.30 16 11 Si 0.91 36.72 25.01 68.60 1.72 38.43 16 12 H -0.25 -9.41 6.71 99.48 0.67 -8.74 16 13 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 14 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 15 C 0.49 21.89 7.37 87.66 0.65 22.54 16 16 O -0.60 -28.49 15.73 -3.09 -0.05 -28.54 16 17 C -0.05 -1.75 4.89 29.10 0.14 -1.61 16 18 C -0.15 -5.02 5.00 24.58 0.12 -4.89 16 19 C -0.13 -3.67 10.05 21.22 0.21 -3.45 16 20 C -0.11 -2.74 10.13 21.25 0.22 -2.52 16 21 C -0.16 -4.47 7.10 66.75 0.47 -4.00 16 22 Cl -0.01 -0.27 29.29 -2.72 -0.08 -0.35 16 23 S 0.13 4.04 23.33 -56.49 -1.32 2.72 16 24 H 0.06 1.57 8.13 -2.39 -0.02 1.55 16 25 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.06 1.56 8.13 -2.39 -0.02 1.54 16 27 H 0.11 4.62 3.67 -2.39 -0.01 4.61 16 28 H 0.13 4.81 7.64 -2.39 -0.02 4.79 16 29 H 0.28 13.73 8.31 -92.70 -0.77 12.96 16 30 H 0.10 3.63 7.67 -2.39 -0.02 3.61 16 31 H 0.13 4.39 8.10 -2.39 -0.02 4.37 16 32 H 0.16 4.00 8.06 -2.92 -0.02 3.98 16 33 H 0.17 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -63.14 321.56 5.56 -57.58 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 1.12 Total: 19.50 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: 5.17 Total: 17.94 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: -0.81 Total: -68.56 kcal Atomic # 8 Polarization: -67.03 SS G_CDS: -0.24 Total: -67.28 kcal Atomic # 14 Polarization: 36.72 SS G_CDS: 1.72 Total: 38.43 kcal Atomic # 16 Polarization: 4.04 SS G_CDS: -1.32 Total: 2.72 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -0.08 Total: -0.35 kcal Total: -63.14 5.56 -57.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193671514.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.051 kcal (2) G-P(sol) polarization free energy of solvation -63.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds