Wall clock time and date at job start Tue Mar 31 2020 11:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 120.00112 * 2 1 4 4 H 1.48493 * 109.47111 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.46984 * 120.00333 * 3 2 1 6 6 H 1.48501 * 109.46759 * 240.00153 * 3 2 1 7 7 C 1.37881 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99997 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99622 * 359.97438 * 7 2 1 10 10 O 1.42898 * 112.94756 * 50.33585 * 9 7 2 11 11 C 1.53945 * 113.74278 * 278.73981 * 9 7 2 12 12 N 1.47813 * 86.03905 * 222.08665 * 11 9 7 13 13 C 1.34771 * 134.45903 * 204.64685 * 12 11 9 14 14 O 1.21581 * 120.00420 * 174.49990 * 13 12 11 15 15 C 1.47643 * 119.99938 * 354.50422 * 13 12 11 16 16 C 1.39708 * 120.14005 * 335.35818 * 15 13 12 17 17 C 1.37992 * 119.86394 * 179.97438 * 16 15 13 18 18 F 1.35095 * 119.92317 * 180.02562 * 17 16 15 19 19 C 1.38811 * 120.15044 * 359.97438 * 17 16 15 20 20 Cl 1.73602 * 119.84743 * 180.02562 * 19 17 16 21 21 C 1.38316 * 120.29363 * 359.97438 * 19 17 16 22 22 C 1.38262 * 120.13110 * 359.79119 * 21 19 17 23 23 F 1.35105 * 120.07407 * 180.23071 * 22 21 19 24 24 C 1.47580 * 91.04942 * 24.54892 * 12 11 9 25 25 H 0.97005 * 119.99862 * 359.97438 * 1 2 3 26 26 H 0.96697 * 114.00228 * 309.66988 * 10 9 7 27 27 H 1.08999 * 113.77415 * 336.35448 * 11 9 7 28 28 H 1.09001 * 113.76443 * 107.74873 * 11 9 7 29 29 H 1.07999 * 120.06613 * 359.96269 * 16 15 13 30 30 H 1.07998 * 119.93471 * 180.02562 * 21 19 17 31 31 H 1.08999 * 113.77521 * 221.15307 * 24 12 11 32 32 H 1.08998 * 113.76757 * 89.75219 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 8 0.2446 -2.5614 -1.0131 11 6 0.7561 -2.9291 1.3924 12 7 1.1919 -4.2900 1.0142 13 6 0.8426 -5.5338 1.3980 14 8 1.3140 -6.5001 0.8304 15 6 -0.1126 -5.7229 2.5078 16 6 -0.2657 -4.7299 3.4786 17 6 -1.1605 -4.9124 4.5131 18 9 -1.3098 -3.9527 5.4521 19 6 -1.9082 -6.0793 4.5905 20 17 -3.0321 -6.3004 5.8950 21 6 -1.7625 -7.0662 3.6323 22 6 -0.8730 -6.8937 2.5880 23 9 -0.7350 -7.8563 1.6502 24 6 2.1607 -3.7401 0.0462 25 1 -0.4850 0.8401 0.0004 26 1 -0.3475 -1.7970 -1.0268 27 1 1.3273 -2.4974 2.2142 28 1 -0.3215 -2.8325 1.5248 29 1 0.3152 -3.8213 3.4195 30 1 -2.3475 -7.9716 3.6980 31 1 2.2026 -4.2898 -0.8941 32 1 3.1455 -3.5471 0.4717 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193989790.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:42 Heat of formation + Delta-G solvation = -127.131257 kcal Electronic energy + Delta-G solvation = -24029.045145 eV Core-core repulsion = 19845.592952 eV Total energy + Delta-G solvation = -4183.452194 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.042 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.21832 -50.20752 -41.57246 -40.02618 -38.93881 -37.76205 -35.88914 -34.15042 -33.00506 -31.42913 -30.22222 -27.35218 -27.17011 -25.33434 -24.08043 -22.06815 -20.63553 -19.45020 -19.00499 -18.79634 -18.63737 -17.72422 -17.33614 -17.18686 -16.75399 -16.66338 -16.27573 -16.00429 -15.87487 -15.45906 -15.09785 -14.90004 -14.37261 -14.21062 -14.05521 -14.00548 -13.80119 -13.41916 -13.05050 -12.86940 -12.75322 -12.55674 -12.30738 -12.25451 -12.21582 -11.52104 -11.10482 -10.65231 -10.48147 -10.30442 -9.95104 -9.65055 -8.26230 -6.43173 -0.90858 -0.43535 0.56719 1.32391 1.49677 1.52412 1.58732 1.68833 2.10919 2.41700 2.62532 2.77526 2.95140 3.05307 3.20549 3.56404 3.71888 3.96770 4.12813 4.14474 4.31634 4.39093 4.53263 4.57740 4.59837 4.71355 4.84344 4.88289 5.18352 5.21717 5.73120 5.92018 6.62545 6.63278 6.88656 7.30354 7.43481 8.79687 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.016400 B = 0.004102 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.885876 B = 6824.153721 C = 8066.248205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.037 3.963 3 Si 0.965 3.035 4 H -0.285 1.285 5 H -0.266 1.266 6 H -0.276 1.276 7 C -0.557 4.557 8 H 0.075 0.925 9 C 0.219 3.781 10 O -0.587 6.587 11 C 0.087 3.913 12 N -0.624 5.624 13 C 0.565 3.435 14 O -0.576 6.576 15 C -0.141 4.141 16 C -0.078 4.078 17 C 0.098 3.902 18 F -0.117 7.117 19 C -0.022 4.022 20 Cl -0.013 7.013 21 C -0.107 4.107 22 C 0.147 3.853 23 F -0.119 7.119 24 C 0.114 3.886 25 H 0.276 0.724 26 H 0.388 0.612 27 H 0.105 0.895 28 H 0.071 0.929 29 H 0.166 0.834 30 H 0.196 0.804 31 H 0.062 0.938 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.072 -7.923 11.969 15.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.164 4.164 3 Si 0.791 3.209 4 H -0.210 1.210 5 H -0.191 1.191 6 H -0.202 1.202 7 C -0.595 4.595 8 H 0.093 0.907 9 C 0.178 3.822 10 O -0.398 6.398 11 C -0.035 4.035 12 N -0.356 5.356 13 C 0.355 3.645 14 O -0.458 6.458 15 C -0.145 4.145 16 C -0.097 4.097 17 C 0.077 3.923 18 F -0.096 7.096 19 C -0.051 4.051 20 Cl 0.016 6.984 21 C -0.126 4.126 22 C 0.126 3.874 23 F -0.097 7.097 24 C -0.007 4.007 25 H 0.086 0.914 26 H 0.242 0.758 27 H 0.122 0.878 28 H 0.089 0.911 29 H 0.183 0.817 30 H 0.213 0.787 31 H 0.081 0.919 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.857 -9.062 11.711 15.584 hybrid contribution 0.025 1.382 -0.053 1.384 sum -4.831 -7.680 11.658 14.773 Atomic orbital electron populations 1.69451 1.07078 1.29013 1.49960 1.25692 0.95684 1.02413 0.92610 0.85491 0.78314 0.78232 0.78913 1.21018 1.19095 1.20176 1.21682 0.94259 0.90530 1.52999 0.90682 1.20114 0.85879 0.91869 0.84328 1.86062 1.47513 1.49744 1.56518 1.24373 1.00357 0.76700 1.02103 1.50150 1.39779 1.04645 1.41065 1.17891 0.81853 0.81904 0.82835 1.90767 1.57832 1.39912 1.57334 1.19882 1.00739 0.95814 0.98043 1.21371 0.97310 0.99445 0.91571 1.17109 0.98758 0.86946 0.89455 1.91588 1.94479 1.61312 1.62194 1.20861 0.95905 0.94295 0.94011 1.98427 1.58099 1.96769 1.45085 1.21012 0.99004 1.01395 0.91144 1.17581 0.96264 0.85307 0.88218 1.91594 1.94352 1.60832 1.62970 1.23575 0.94071 0.91635 0.91466 0.91446 0.75776 0.87761 0.91078 0.81696 0.78683 0.91917 0.86932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -44.13 11.20 21.45 0.24 -43.89 16 2 C 0.04 1.74 5.40 84.66 0.46 2.20 16 3 Si 0.97 37.70 29.54 68.60 2.03 39.73 16 4 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 6 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.56 -26.23 8.61 25.60 0.22 -26.01 16 8 H 0.08 3.41 7.81 -2.91 -0.02 3.38 16 9 C 0.22 9.95 1.40 -10.88 -0.02 9.93 16 10 O -0.59 -29.47 13.48 -148.98 -2.01 -31.48 16 11 C 0.09 3.39 5.68 86.44 0.49 3.88 16 12 N -0.62 -24.99 3.58 -843.22 -3.02 -28.01 16 13 C 0.56 22.60 7.78 86.73 0.67 23.27 16 14 O -0.58 -26.58 16.46 -3.97 -0.07 -26.65 16 15 C -0.14 -4.47 5.82 -20.05 -0.12 -4.58 16 16 C -0.08 -2.10 8.80 22.57 0.20 -1.90 16 17 C 0.10 2.31 7.26 22.35 0.16 2.47 16 18 F -0.12 -2.81 16.82 44.97 0.76 -2.05 16 19 C -0.02 -0.46 6.33 22.43 0.14 -0.31 16 20 Cl -0.01 -0.23 28.60 -2.72 -0.08 -0.31 16 21 C -0.11 -2.12 9.79 22.29 0.22 -1.90 16 22 C 0.15 4.11 7.25 22.66 0.16 4.28 16 23 F -0.12 -3.83 15.85 44.97 0.71 -3.12 16 24 C 0.11 4.71 8.23 86.49 0.71 5.42 16 25 H 0.28 12.72 8.31 -92.70 -0.77 11.95 16 26 H 0.39 19.71 6.60 -74.06 -0.49 19.22 16 27 H 0.10 3.69 7.70 -2.39 -0.02 3.67 16 28 H 0.07 2.81 7.86 -2.39 -0.02 2.79 16 29 H 0.17 4.41 5.54 -2.91 -0.02 4.39 16 30 H 0.20 2.52 8.06 -2.91 -0.02 2.50 16 31 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.11 4.09 8.09 -2.39 -0.02 4.07 16 Total: -1.00 -56.82 307.31 2.60 -54.22 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.72 Total: 24.81 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: 3.31 Total: 16.75 kcal Atomic # 7 Polarization: -69.12 SS G_CDS: -2.78 Total: -71.90 kcal Atomic # 8 Polarization: -56.06 SS G_CDS: -2.07 Total: -58.13 kcal Atomic # 9 Polarization: -6.64 SS G_CDS: 1.47 Total: -5.17 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.73 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -0.08 Total: -0.31 kcal Total: -56.82 2.60 -54.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193989790.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.913 kcal (2) G-P(sol) polarization free energy of solvation -56.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds