Wall clock time and date at job start Tue Mar 31 2020 11:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46812 * 2 1 4 4 C 1.50695 * 109.47063 * 239.99851 * 2 1 3 5 5 H 1.07998 * 120.00418 * 245.62304 * 4 2 1 6 6 C 1.37879 * 120.00201 * 65.62961 * 4 2 1 7 7 N 1.31514 * 120.00393 * 197.18198 * 6 4 2 8 8 Si 1.86804 * 119.99786 * 17.45333 * 6 4 2 9 9 H 1.48502 * 109.47029 * 179.72709 * 8 6 4 10 10 H 1.48503 * 109.46948 * 299.72609 * 8 6 4 11 11 H 1.48492 * 109.47033 * 59.72641 * 8 6 4 12 12 N 1.46502 * 109.47016 * 119.99690 * 2 1 3 13 13 C 1.34775 * 120.00053 * 275.00255 * 12 2 1 14 14 O 1.21280 * 120.00115 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99887 * 180.02562 * 13 12 2 16 16 O 1.42902 * 109.47061 * 179.97438 * 15 13 12 17 17 C 1.35924 * 116.99938 * 180.02562 * 16 15 13 18 18 C 1.38692 * 120.05156 * 359.71813 * 17 16 15 19 19 C 1.38266 * 119.94138 * 179.77244 * 18 17 16 20 20 Cl 1.73605 * 119.97342 * 180.25822 * 19 18 17 21 21 C 1.38396 * 120.05340 * 0.50921 * 19 18 17 22 22 C 1.38231 * 120.10068 * 359.74603 * 21 19 18 23 23 C 1.38262 * 120.05964 * 359.97438 * 22 21 19 24 24 Cl 1.73594 * 120.02702 * 179.97438 * 23 22 21 25 25 H 1.09000 * 109.46665 * 186.33884 * 1 2 3 26 26 H 1.08994 * 109.46957 * 306.33629 * 1 2 3 27 27 H 1.09002 * 109.47065 * 66.34399 * 1 2 3 28 28 H 0.97001 * 119.99221 * 355.17115 * 7 6 4 29 29 H 0.96996 * 119.99659 * 94.99859 * 12 2 1 30 30 H 1.08996 * 109.47190 * 300.00321 * 15 13 12 31 31 H 1.09000 * 109.47003 * 60.00180 * 15 13 12 32 32 H 1.07998 * 120.02780 * 0.02562 * 18 17 16 33 33 H 1.07990 * 119.94761 * 179.72328 * 21 19 18 34 34 H 1.07997 * 119.96883 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1340 6 6 1.7977 -0.1756 -2.4794 7 7 1.9225 -0.9278 -3.5509 8 14 1.3097 1.6194 -2.6501 9 1 1.1227 1.9471 -4.0864 10 1 0.0398 1.8589 -1.9184 11 1 2.3784 2.4792 -2.0813 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8590 1.1587 2.4115 15 6 2.6499 -0.7284 3.5875 16 8 2.6984 0.1900 4.6813 17 6 3.1339 -0.2939 5.8744 18 6 3.5012 -1.6262 5.9913 19 6 3.9484 -2.1149 7.2049 20 17 4.4148 -3.7808 7.3504 21 6 4.0197 -1.2783 8.3051 22 6 3.6491 0.0486 8.1923 23 6 3.2067 0.5433 6.9793 24 17 2.7409 2.2097 6.8387 25 1 -0.3633 -1.0214 0.1135 26 1 -0.3633 0.6089 0.8278 27 1 -0.3633 0.4124 -0.9413 28 1 2.2471 -1.8383 -3.4691 29 1 2.2490 -1.6317 1.1527 30 1 1.9778 -1.5507 3.8325 31 1 3.6493 -1.1201 3.3979 32 1 3.4419 -2.2803 5.1340 33 1 4.3650 -1.6629 9.2533 34 1 3.7051 0.6994 9.0523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194741294.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:08 Heat of formation + Delta-G solvation = -84.013416 kcal Electronic energy + Delta-G solvation = -21045.929513 eV Core-core repulsion = 17416.143730 eV Total energy + Delta-G solvation = -3629.785784 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.62998 -40.50641 -38.75827 -37.74217 -37.12979 -36.80062 -34.52647 -32.25916 -31.84822 -31.16681 -28.93496 -26.87925 -24.26249 -23.69182 -22.68358 -21.37609 -19.90634 -19.70456 -18.22910 -17.63805 -17.52621 -17.21147 -16.81260 -16.21297 -15.78307 -15.59092 -15.17648 -15.01011 -14.61109 -14.58762 -14.20609 -14.01885 -13.58883 -13.49492 -13.35105 -13.34522 -12.73065 -12.50241 -12.42337 -12.05188 -11.97547 -11.89312 -11.77130 -11.69040 -11.18461 -10.89835 -10.48626 -10.02164 -10.00137 -9.36512 -8.81620 -6.46169 -0.21538 0.07619 0.89762 1.13090 1.45115 1.50038 1.51482 1.56843 1.69995 2.31462 2.40146 2.65623 2.99896 3.53138 3.58226 3.83433 3.90978 4.00065 4.02330 4.16205 4.44562 4.48593 4.62983 4.70480 4.75936 4.94309 5.01107 5.06123 5.33056 5.41590 5.54091 5.61193 5.97241 6.00659 6.50934 6.72063 7.23651 7.33581 8.58869 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.017886 B = 0.003042 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.087499 B = 9202.678417 C =10532.413669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.245 3.755 3 H 0.022 0.978 4 C -0.613 4.613 5 H 0.046 0.954 6 C -0.003 4.003 7 N -0.926 5.926 8 Si 1.070 2.930 9 H -0.282 1.282 10 H -0.248 1.248 11 H -0.275 1.275 12 N -0.695 5.695 13 C 0.502 3.498 14 O -0.577 6.577 15 C 0.045 3.955 16 O -0.300 6.300 17 C 0.136 3.864 18 C -0.195 4.195 19 C 0.003 3.997 20 Cl -0.051 7.051 21 C -0.129 4.129 22 C -0.052 4.052 23 C -0.085 4.085 24 Cl -0.062 7.062 25 H 0.056 0.944 26 H 0.037 0.963 27 H 0.056 0.944 28 H 0.260 0.740 29 H 0.409 0.591 30 H 0.128 0.872 31 H 0.123 0.877 32 H 0.163 0.837 33 H 0.172 0.828 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.434 -4.188 27.208 27.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.141 3.859 3 H 0.040 0.960 4 C -0.651 4.651 5 H 0.064 0.936 6 C -0.205 4.205 7 N -0.561 5.561 8 Si 0.893 3.107 9 H -0.207 1.207 10 H -0.172 1.172 11 H -0.201 1.201 12 N -0.346 5.346 13 C 0.288 3.712 14 O -0.457 6.457 15 C -0.033 4.033 16 O -0.212 6.212 17 C 0.089 3.911 18 C -0.214 4.214 19 C -0.024 4.024 20 Cl -0.022 7.022 21 C -0.148 4.148 22 C -0.071 4.071 23 C -0.112 4.112 24 Cl -0.033 7.033 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.245 0.755 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.180 0.820 33 H 0.190 0.810 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 3.709 -2.034 26.056 26.397 hybrid contribution 0.713 -1.948 0.398 2.112 sum 4.422 -3.983 26.453 27.115 Atomic orbital electron populations 1.22390 0.97445 1.01047 1.00433 1.18756 0.91558 0.93083 0.82531 0.96022 1.22235 1.40791 1.09861 0.92256 0.93587 1.26749 0.94214 1.07670 0.91821 1.70984 1.43073 1.09821 1.32230 0.83713 0.78752 0.71652 0.76617 1.20719 1.17233 1.20089 1.45937 1.65416 1.14488 1.08736 1.20634 0.78240 0.87224 0.85089 1.90697 1.51711 1.17813 1.85481 1.22696 1.05213 0.91971 0.83437 1.86252 1.80520 1.38163 1.16269 1.18769 0.95256 0.91913 0.85211 1.21242 1.06464 0.93880 0.99857 1.20860 0.99785 0.86943 0.94784 1.98406 1.90264 1.15458 1.98082 1.21259 1.02245 0.92037 0.99277 1.21181 0.94822 0.95746 0.95306 1.20619 1.09350 0.86788 0.94459 1.98397 1.90845 1.15732 1.98309 0.92499 0.94385 0.92528 0.93100 0.75484 0.85481 0.85949 0.81952 0.81032 0.80726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.67 9.16 71.98 0.66 -6.01 16 2 C 0.25 11.37 2.14 44.25 0.09 11.46 16 3 H 0.02 1.12 6.23 -2.39 -0.01 1.10 16 4 C -0.61 -32.41 9.00 25.60 0.23 -32.18 16 5 H 0.05 2.53 7.96 -2.91 -0.02 2.51 16 6 C 0.00 -0.18 5.29 84.66 0.45 0.27 16 7 N -0.93 -54.97 13.70 21.45 0.29 -54.68 16 8 Si 1.07 49.83 26.29 68.60 1.80 51.63 16 9 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 10 H -0.25 -10.55 5.76 99.48 0.57 -9.98 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 N -0.69 -25.83 5.07 -446.10 -2.26 -28.09 16 13 C 0.50 18.04 7.87 87.66 0.69 18.73 16 14 O -0.58 -26.48 16.16 16.01 0.26 -26.22 16 15 C 0.04 1.07 5.22 71.23 0.37 1.44 16 16 O -0.30 -8.55 9.13 -73.66 -0.67 -9.23 16 17 C 0.14 3.06 6.68 22.52 0.15 3.21 16 18 C -0.20 -3.37 8.82 22.39 0.20 -3.17 16 19 C 0.00 0.05 6.32 22.31 0.14 0.19 16 20 Cl -0.05 -0.70 28.95 -2.72 -0.08 -0.78 16 21 C -0.13 -1.54 9.83 22.31 0.22 -1.32 16 22 C -0.05 -0.72 9.82 22.27 0.22 -0.50 16 23 C -0.08 -1.78 6.33 22.41 0.14 -1.64 16 24 Cl -0.06 -1.51 28.50 -2.72 -0.08 -1.58 16 25 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 2.51 4.88 -2.39 -0.01 2.49 16 28 H 0.26 15.35 8.73 -92.71 -0.81 14.54 16 29 H 0.41 12.64 8.53 -92.71 -0.79 11.85 16 30 H 0.13 2.16 7.65 -2.39 -0.02 2.14 16 31 H 0.12 2.21 7.67 -2.39 -0.02 2.19 16 32 H 0.16 2.21 6.30 -2.91 -0.02 2.19 16 33 H 0.17 1.07 8.06 -2.92 -0.02 1.04 16 34 H 0.18 1.44 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -70.32 324.60 3.03 -67.29 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 0.20 Total: 11.17 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 3.56 Total: -9.52 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -1.97 Total: -82.77 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -0.41 Total: -35.44 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 1.80 Total: 51.63 kcal Atomic # 17 Polarization: -2.21 SS G_CDS: -0.16 Total: -2.36 kcal Total: -70.32 3.03 -67.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194741294.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.724 kcal (2) G-P(sol) polarization free energy of solvation -70.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds