Wall clock time and date at job start Tue Mar 31 2020 11:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34235 * 116.99798 * 2 1 4 4 O 1.20826 * 119.99934 * 359.97438 * 3 2 1 5 5 C 1.50693 * 119.99968 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.47421 * 59.99800 * 5 3 2 7 7 C 1.50701 * 109.47433 * 300.00127 * 5 3 2 8 8 C 1.38268 * 119.97962 * 290.37266 * 7 5 3 9 9 C 1.38210 * 120.03608 * 179.72403 * 8 7 5 10 10 C 1.38341 * 120.00095 * 0.54929 * 9 8 7 11 11 Cl 1.73595 * 120.02086 * 179.75027 * 10 9 8 12 12 C 1.38453 * 119.95908 * 359.72528 * 10 9 8 13 13 Cl 1.73601 * 120.01439 * 180.02562 * 12 10 9 14 14 C 1.38201 * 119.98387 * 110.64430 * 7 5 3 15 15 N 1.46499 * 109.47227 * 179.97438 * 5 3 2 16 16 C 1.46503 * 120.00207 * 234.36211 * 15 5 3 17 17 C 1.36936 * 119.99871 * 54.36282 * 15 5 3 18 18 H 1.07997 * 120.00032 * 345.16586 * 17 15 5 19 19 C 1.38819 * 120.00016 * 165.43740 * 17 15 5 20 20 N 1.31613 * 119.99892 * 5.32221 * 19 17 15 21 21 Si 1.86797 * 119.99955 * 185.31835 * 19 17 15 22 22 H 1.48502 * 109.46990 * 60.00294 * 21 19 17 23 23 H 1.48501 * 109.46946 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47296 * 300.00234 * 21 19 17 25 25 H 1.09007 * 109.46903 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47192 * 300.00016 * 1 2 3 27 27 H 1.09000 * 109.47092 * 60.00238 * 1 2 3 28 28 H 1.07995 * 119.97783 * 359.97438 * 8 7 5 29 29 H 1.08003 * 119.99497 * 180.25446 * 9 8 7 30 30 H 1.08003 * 119.99776 * 0.02562 * 14 7 5 31 31 H 1.08999 * 109.47367 * 245.41453 * 16 15 5 32 32 H 1.08999 * 109.46796 * 5.41900 * 16 15 5 33 33 H 1.09003 * 109.46792 * 125.41651 * 16 15 5 34 34 H 0.97004 * 120.00108 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9564 0.7807 -0.8891 7 6 4.1046 0.5921 1.2314 8 6 3.9114 1.1601 2.4771 9 6 4.3997 0.5320 3.6072 10 6 5.0922 -0.6601 3.4913 11 17 5.7114 -1.4462 4.9098 12 6 5.2906 -1.2259 2.2434 13 17 6.1588 -2.7221 2.0964 14 6 4.7961 -0.5987 1.1138 15 7 3.9816 2.6798 -0.0002 16 6 4.8986 3.1721 -1.0312 17 6 3.5127 3.5329 0.9629 18 1 2.6665 3.2485 1.5707 19 6 4.1214 4.7658 1.1542 20 7 5.0804 5.1591 0.3431 21 14 3.5796 5.8664 2.5628 22 1 3.7882 5.1594 3.8520 23 1 4.3799 7.1173 2.5497 24 1 2.1404 6.1974 2.4071 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.3751 2.0931 2.5674 29 1 4.2449 0.9742 4.5803 30 1 4.9509 -1.0394 0.1400 31 1 5.8396 3.4697 -0.5685 32 1 5.0852 2.3821 -1.7586 33 1 4.4532 4.0308 -1.5336 34 1 5.5061 6.0204 0.4769 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195158076.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:18 Heat of formation + Delta-G solvation = -44.746483 kcal Electronic energy + Delta-G solvation = -22544.015215 eV Core-core repulsion = 18915.932173 eV Total energy + Delta-G solvation = -3628.083042 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.61619 -40.26588 -38.16356 -37.47743 -37.36440 -36.68353 -33.99840 -32.04392 -31.62324 -29.28056 -28.06907 -27.57344 -23.98077 -23.76950 -23.29961 -21.39370 -19.29075 -18.72817 -17.98448 -17.37674 -17.26363 -17.00426 -16.66817 -16.09426 -15.28106 -15.15112 -14.94122 -14.73966 -14.66068 -14.22226 -13.82752 -13.69177 -13.21916 -13.07277 -12.84329 -12.82480 -12.68391 -12.60144 -12.35736 -12.20935 -12.05762 -11.98638 -11.85166 -11.68715 -11.51548 -11.21189 -10.60630 -9.87448 -9.56204 -9.05606 -7.79391 -5.24321 -0.01472 0.19267 0.86157 1.19323 1.39834 1.44467 1.46659 1.51810 1.85814 2.41546 2.57445 3.33350 3.55050 3.68379 3.77576 4.12773 4.14232 4.27136 4.36781 4.39186 4.40526 4.51751 4.73922 4.79123 4.81569 4.93622 5.17258 5.44486 5.47788 5.55396 5.64254 5.74180 5.85372 6.26407 6.97980 7.10409 7.74507 8.11844 9.17587 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.011781 B = 0.005606 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.235635 B = 4993.608196 C = 6015.786175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.441 3.559 4 O -0.518 6.518 5 C 0.222 3.778 6 H 0.134 0.866 7 C -0.072 4.072 8 C -0.092 4.092 9 C -0.106 4.106 10 C -0.037 4.037 11 Cl -0.052 7.052 12 C -0.039 4.039 13 Cl -0.047 7.047 14 C -0.078 4.078 15 N -0.586 5.586 16 C 0.174 3.826 17 C -0.230 4.230 18 H 0.076 0.924 19 C -0.046 4.046 20 N -0.933 5.933 21 Si 0.953 3.047 22 H -0.269 1.269 23 H -0.293 1.293 24 H -0.288 1.288 25 H 0.134 0.866 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.134 0.866 29 H 0.150 0.850 30 H 0.166 0.834 31 H 0.041 0.959 32 H 0.037 0.963 33 H 0.008 0.992 34 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.580 -15.918 2.574 16.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.281 3.719 4 O -0.405 6.405 5 C 0.110 3.890 6 H 0.151 0.849 7 C -0.075 4.075 8 C -0.111 4.111 9 C -0.125 4.125 10 C -0.065 4.065 11 Cl -0.023 7.023 12 C -0.066 4.066 13 Cl -0.018 7.018 14 C -0.097 4.097 15 N -0.306 5.306 16 C 0.030 3.970 17 C -0.359 4.359 18 H 0.093 0.907 19 C -0.240 4.240 20 N -0.580 5.580 21 Si 0.781 3.219 22 H -0.194 1.194 23 H -0.219 1.219 24 H -0.214 1.214 25 H 0.152 0.848 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.152 0.848 29 H 0.167 0.833 30 H 0.183 0.817 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.026 0.974 34 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.568 -15.607 2.652 15.908 hybrid contribution -0.447 1.213 0.742 1.491 sum -2.015 -14.394 3.394 14.925 Atomic orbital electron populations 1.23438 0.76054 1.05268 1.01777 1.86558 1.24107 1.33205 1.84052 1.25627 0.93487 0.81183 0.71614 1.90660 1.67233 1.37546 1.45022 1.18908 0.86035 0.86545 0.97473 0.84872 1.20180 0.98523 0.93847 0.94975 1.21697 0.98467 0.99079 0.91829 1.21143 0.97789 0.93290 1.00260 1.20807 1.02281 0.96016 0.87374 1.98355 1.85887 1.79826 1.38279 1.20661 1.01563 0.91284 0.93126 1.98360 1.74657 1.30612 1.98170 1.20996 0.96512 0.93675 0.98551 1.44152 1.52252 1.03086 1.31137 1.21038 0.93138 0.94393 0.88398 1.19255 1.09003 0.97207 1.10415 0.90685 1.25561 0.98274 0.99495 1.00698 1.70315 1.28363 1.20986 1.38381 0.85552 0.77042 0.78586 0.80699 1.19411 1.21891 1.21419 0.84831 0.93097 0.92516 0.84805 0.83263 0.81680 0.94108 0.94428 0.97360 0.94345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.56 113.37 1.20 1.87 16 2 O -0.36 -11.17 10.48 -51.47 -0.54 -11.71 16 3 C 0.44 16.71 6.86 71.23 0.49 17.20 16 4 O -0.52 -23.76 14.20 21.96 0.31 -23.45 16 5 C 0.22 8.15 3.00 43.50 0.13 8.28 16 6 H 0.13 4.01 7.32 -2.38 -0.02 3.99 16 7 C -0.07 -2.43 4.88 -19.87 -0.10 -2.53 16 8 C -0.09 -3.31 8.77 22.27 0.20 -3.11 16 9 C -0.11 -3.27 9.83 22.29 0.22 -3.05 16 10 C -0.04 -1.06 6.32 22.35 0.14 -0.92 16 11 Cl -0.05 -1.32 27.96 -2.72 -0.08 -1.40 16 12 C -0.04 -1.06 6.32 22.35 0.14 -0.92 16 13 Cl -0.05 -1.11 27.96 -2.72 -0.08 -1.19 16 14 C -0.08 -2.17 9.45 22.29 0.21 -1.96 16 15 N -0.59 -27.17 2.71 -711.21 -1.93 -29.10 16 16 C 0.17 8.03 9.03 127.77 1.15 9.18 16 17 C -0.23 -11.86 6.23 84.04 0.52 -11.34 16 18 H 0.08 3.93 5.18 -2.91 -0.02 3.92 16 19 C -0.05 -2.49 5.46 84.86 0.46 -2.02 16 20 N -0.93 -52.52 9.61 21.65 0.21 -52.31 16 21 Si 0.95 44.35 29.56 68.60 2.03 46.38 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 24 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 25 H 0.13 2.07 8.14 -2.38 -0.02 2.05 16 26 H 0.05 1.29 8.13 -2.39 -0.02 1.27 16 27 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 28 H 0.13 5.55 4.74 -2.91 -0.01 5.53 16 29 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 30 H 0.17 3.61 7.97 -2.91 -0.02 3.59 16 31 H 0.04 2.07 6.67 -2.39 -0.02 2.06 16 32 H 0.04 1.40 7.56 -2.39 -0.02 1.38 16 33 H 0.01 0.41 7.49 -2.39 -0.02 0.39 16 34 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -62.37 318.23 5.84 -56.53 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: 1.15 Total: 5.55 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 4.77 Total: 10.70 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -1.72 Total: -81.41 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -0.23 Total: -35.16 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 17 Polarization: -2.43 SS G_CDS: -0.15 Total: -2.59 kcal Total: -62.37 5.84 -56.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195158076.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.783 kcal (2) G-P(sol) polarization free energy of solvation -62.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds