Wall clock time and date at job start Tue Mar 31 2020 11:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 116.99622 * 2 1 4 4 O 1.20825 * 120.00244 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99903 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.46762 * 299.99766 * 5 3 2 7 7 C 1.50702 * 109.47241 * 59.99400 * 5 3 2 8 8 C 1.38271 * 119.97583 * 44.88599 * 7 5 3 9 9 C 1.38201 * 120.03780 * 179.97438 * 8 7 5 10 10 C 1.38354 * 120.00054 * 359.97438 * 9 8 7 11 11 Cl 1.73593 * 120.02303 * 180.02562 * 10 9 8 12 12 C 1.38443 * 119.95660 * 0.02562 * 10 9 8 13 13 Cl 1.73602 * 120.01824 * 179.97438 * 12 10 9 14 14 C 1.38197 * 119.98299 * 224.60689 * 7 5 3 15 15 N 1.46496 * 109.47347 * 179.97438 * 5 3 2 16 16 C 1.46497 * 120.00067 * 292.23017 * 15 5 3 17 17 C 1.36940 * 119.99780 * 112.22718 * 15 5 3 18 18 H 1.07993 * 120.00276 * 340.37066 * 17 15 5 19 19 C 1.38815 * 119.99520 * 160.37787 * 17 15 5 20 20 N 1.31608 * 120.00403 * 12.06296 * 19 17 15 21 21 Si 1.86801 * 119.99569 * 192.07072 * 19 17 15 22 22 H 1.48501 * 109.47412 * 89.99731 * 21 19 17 23 23 H 1.48503 * 109.46815 * 209.99612 * 21 19 17 24 24 H 1.48506 * 109.47115 * 329.99573 * 21 19 17 25 25 H 1.09000 * 109.47722 * 60.00119 * 1 2 3 26 26 H 1.09002 * 109.47417 * 299.99825 * 1 2 3 27 27 H 1.08999 * 109.47366 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.98114 * 359.96982 * 8 7 5 29 29 H 1.07995 * 120.00328 * 179.97438 * 9 8 7 30 30 H 1.07996 * 120.00137 * 0.02562 * 14 7 5 31 31 H 1.08996 * 109.47131 * 5.42058 * 16 15 5 32 32 H 1.09000 * 109.47777 * 125.42102 * 16 15 5 33 33 H 1.08998 * 109.46967 * 245.42487 * 16 15 5 34 34 H 0.97003 * 120.00600 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9563 0.7807 0.8892 7 6 4.1047 0.5920 -1.2313 8 6 3.5213 0.8268 -2.4628 9 6 4.0144 0.2015 -3.5923 10 6 5.0926 -0.6595 -3.4915 11 17 5.7128 -1.4447 -4.9100 12 6 5.6766 -0.8945 -2.2584 13 17 7.0292 -1.9752 -2.1299 14 6 5.1847 -0.2641 -1.1294 15 7 3.9816 2.6798 -0.0011 16 6 3.7286 3.5181 -1.1756 17 6 4.6064 3.2094 1.0964 18 1 4.5175 2.7221 2.0560 19 6 5.3538 4.3729 0.9754 20 7 5.2734 5.0956 -0.1216 21 14 6.4738 4.9126 2.3695 22 1 7.8226 4.3215 2.1781 23 1 6.5788 6.3939 2.3748 24 1 5.9105 4.4516 3.6639 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 2.6798 1.4992 -2.5419 29 1 3.5580 0.3850 -4.5538 30 1 5.6425 -0.4439 -0.1679 31 1 3.1427 2.9566 -1.9033 32 1 3.1769 4.4086 -0.8745 33 1 4.6778 3.8126 -1.6230 34 1 5.7954 5.9089 -0.2060 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195158092.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:21 Heat of formation + Delta-G solvation = -48.747157 kcal Electronic energy + Delta-G solvation = -22386.111431 eV Core-core repulsion = 18757.854907 eV Total energy + Delta-G solvation = -3628.256524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.71060 -40.34639 -38.16041 -37.51753 -37.41401 -36.76430 -34.09276 -32.15125 -31.61521 -29.41092 -28.19594 -27.50894 -24.31737 -23.74332 -23.34831 -21.29027 -19.12241 -18.74998 -18.15422 -17.64442 -17.28540 -17.11480 -16.68399 -16.22215 -15.49452 -15.19447 -14.97617 -14.85583 -14.68922 -14.27889 -13.93298 -13.62922 -13.32007 -12.97024 -12.87543 -12.83517 -12.67055 -12.56082 -12.37841 -12.29871 -12.03061 -12.02541 -11.85011 -11.75669 -11.66876 -11.46531 -10.62078 -9.95283 -9.65839 -9.08869 -7.87412 -5.35631 -0.11039 0.10713 0.81708 1.14716 1.31276 1.48979 1.49692 1.58482 1.83461 2.32827 2.54868 3.25041 3.52436 3.61733 3.67293 3.98857 4.02239 4.19906 4.26161 4.36969 4.38229 4.45887 4.72002 4.74558 4.75376 4.88536 5.01946 5.33827 5.40733 5.47902 5.54249 5.62733 5.77163 6.19438 6.88794 7.05667 7.68858 8.09903 9.11669 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.011097 B = 0.005390 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.568616 B = 5193.467702 C = 6579.407121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.439 3.561 4 O -0.527 6.527 5 C 0.220 3.780 6 H 0.126 0.874 7 C -0.064 4.064 8 C -0.099 4.099 9 C -0.090 4.090 10 C -0.038 4.038 11 Cl -0.047 7.047 12 C -0.033 4.033 13 Cl -0.047 7.047 14 C -0.079 4.079 15 N -0.577 5.577 16 C 0.183 3.817 17 C -0.278 4.278 18 H 0.084 0.916 19 C -0.038 4.038 20 N -0.929 5.929 21 Si 0.974 3.026 22 H -0.279 1.279 23 H -0.297 1.297 24 H -0.267 1.267 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.134 0.866 28 H 0.128 0.872 29 H 0.165 0.835 30 H 0.155 0.845 31 H 0.026 0.974 32 H -0.003 1.003 33 H 0.035 0.965 34 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.835 -15.517 -5.825 16.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C 0.279 3.721 4 O -0.415 6.415 5 C 0.108 3.892 6 H 0.143 0.857 7 C -0.067 4.067 8 C -0.118 4.118 9 C -0.108 4.108 10 C -0.065 4.065 11 Cl -0.018 7.018 12 C -0.061 4.061 13 Cl -0.018 7.018 14 C -0.099 4.099 15 N -0.296 5.296 16 C 0.039 3.961 17 C -0.407 4.407 18 H 0.102 0.898 19 C -0.234 4.234 20 N -0.574 5.574 21 Si 0.801 3.199 22 H -0.206 1.206 23 H -0.224 1.224 24 H -0.192 1.192 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.152 0.848 28 H 0.146 0.854 29 H 0.183 0.817 30 H 0.172 0.828 31 H 0.044 0.956 32 H 0.016 0.984 33 H 0.053 0.947 34 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.805 -15.172 -5.960 16.540 hybrid contribution 0.295 0.913 0.585 1.124 sum -2.509 -14.258 -5.375 15.443 Atomic orbital electron populations 1.23478 0.75897 1.05378 1.01956 1.86580 1.24274 1.33051 1.83819 1.25932 0.93761 0.81211 0.71170 1.90619 1.67370 1.37772 1.45762 1.18931 0.85745 0.86720 0.97775 0.85685 1.19998 0.96164 0.95397 0.95149 1.21207 1.00330 0.98383 0.91902 1.21124 0.94606 0.94899 1.00194 1.20798 0.98236 1.00128 0.87384 1.98367 1.86586 1.79087 1.37718 1.20717 0.93584 0.98276 0.93494 1.98369 1.42841 1.62247 1.98323 1.20912 0.95235 0.95196 0.98510 1.44006 1.65862 1.03994 1.15744 1.20905 0.97406 0.91044 0.86757 1.19623 1.23576 1.08605 0.88867 0.89790 1.25835 0.99976 0.97803 0.99793 1.70375 1.42645 1.15594 1.28807 0.85186 0.79341 0.76472 0.78929 1.20577 1.22380 1.19174 0.92453 0.92762 0.84829 0.85428 0.81744 0.82755 0.95557 0.98439 0.94708 0.94014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.36 -11.04 10.48 -51.41 -0.54 -11.58 16 3 C 0.44 16.60 6.05 71.24 0.43 17.03 16 4 O -0.53 -23.71 15.40 21.97 0.34 -23.37 16 5 C 0.22 8.46 2.90 43.50 0.13 8.58 16 6 H 0.13 4.40 7.70 -2.39 -0.02 4.38 16 7 C -0.06 -2.13 4.76 -19.87 -0.09 -2.23 16 8 C -0.10 -3.05 7.70 22.27 0.17 -2.88 16 9 C -0.09 -2.31 9.83 22.29 0.22 -2.10 16 10 C -0.04 -0.99 6.32 22.35 0.14 -0.85 16 11 Cl -0.05 -1.08 27.96 -2.72 -0.08 -1.15 16 12 C -0.03 -0.92 6.32 22.35 0.14 -0.78 16 13 Cl -0.05 -1.17 27.96 -2.72 -0.08 -1.24 16 14 C -0.08 -2.35 9.45 22.29 0.21 -2.14 16 15 N -0.58 -27.97 2.51 -711.24 -1.78 -29.75 16 16 C 0.18 9.20 7.38 127.77 0.94 10.15 16 17 C -0.28 -14.64 9.65 84.03 0.81 -13.82 16 18 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 19 C -0.04 -2.08 5.46 84.86 0.46 -1.62 16 20 N -0.93 -53.49 9.76 21.65 0.21 -53.28 16 21 Si 0.97 43.51 29.57 68.60 2.03 45.54 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 23 H -0.30 -13.54 7.11 99.48 0.71 -12.84 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 26 H 0.05 1.30 8.13 -2.39 -0.02 1.28 16 27 H 0.13 1.97 8.14 -2.39 -0.02 1.96 16 28 H 0.13 4.09 5.78 -2.91 -0.02 4.07 16 29 H 0.17 3.31 8.06 -2.91 -0.02 3.28 16 30 H 0.15 4.14 8.00 -2.91 -0.02 4.12 16 31 H 0.03 1.15 4.47 -2.39 -0.01 1.14 16 32 H 0.00 -0.18 7.63 -2.39 -0.02 -0.20 16 33 H 0.03 1.90 6.61 -2.39 -0.02 1.89 16 34 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -64.00 320.15 6.01 -57.99 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: 1.14 Total: 5.67 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 4.76 Total: 11.17 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -1.57 Total: -83.03 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.20 Total: -34.95 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 17 Polarization: -2.24 SS G_CDS: -0.15 Total: -2.39 kcal Total: -64.00 6.01 -57.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195158092.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.247 kcal (2) G-P(sol) polarization free energy of solvation -64.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds