Wall clock time and date at job start Tue Mar 31 2020 11:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37096 * 119.99622 * 2 1 4 4 H 1.08002 * 119.99519 * 204.39271 * 3 2 1 5 5 C 1.38950 * 120.00248 * 24.39341 * 3 2 1 6 6 N 1.31407 * 120.00202 * 12.65577 * 5 3 2 7 7 Si 1.86804 * 119.99901 * 192.65596 * 5 3 2 8 8 H 1.48499 * 109.47217 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.46903 * 120.00051 * 7 5 3 10 10 H 1.48502 * 109.47221 * 239.99835 * 7 5 3 11 11 C 1.34776 * 120.00095 * 179.97438 * 2 1 3 12 12 O 1.21283 * 119.99686 * 180.02562 * 11 2 1 13 13 C 1.50698 * 119.99893 * 0.02562 * 11 2 1 14 14 C 1.52995 * 109.46884 * 180.02562 * 13 11 2 15 15 O 1.42908 * 109.46815 * 179.97438 * 14 13 11 16 16 C 1.35949 * 116.99842 * 179.97438 * 15 14 13 17 17 C 1.38697 * 120.04598 * 0.27488 * 16 15 14 18 18 C 1.38154 * 119.97057 * 180.22745 * 17 16 15 19 19 C 1.38381 * 120.06093 * 359.49733 * 18 17 16 20 20 Cl 1.73602 * 119.95371 * 180.27153 * 19 18 17 21 21 C 1.38346 * 120.09143 * 0.24687 * 19 18 17 22 22 C 1.38254 * 120.03179 * 0.02562 * 21 19 18 23 23 Cl 1.73598 * 120.03051 * 180.02562 * 22 21 19 24 24 H 1.09000 * 109.47534 * 265.86730 * 1 2 3 25 25 H 1.09002 * 109.47429 * 25.86817 * 1 2 3 26 26 H 1.09002 * 109.47306 * 145.86148 * 1 2 3 27 27 H 0.97005 * 120.00237 * 179.97438 * 6 5 3 28 28 H 1.09000 * 109.47470 * 59.99451 * 13 11 2 29 29 H 1.09006 * 109.46972 * 299.99582 * 13 11 2 30 30 H 1.08995 * 109.47782 * 60.00148 * 14 13 11 31 31 H 1.09000 * 109.47166 * 299.98902 * 14 13 11 32 32 H 1.08002 * 120.01959 * 359.97438 * 17 16 15 33 33 H 1.07995 * 119.96886 * 179.76643 * 18 17 16 34 34 H 1.08000 * 119.98371 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1581 1.2291 -0.3863 5 6 1.5487 2.3370 0.4970 6 7 0.4346 2.2491 1.1883 7 14 2.3234 4.0074 0.1822 8 1 3.5636 3.8353 -0.6161 9 1 1.3680 4.8629 -0.5665 10 1 2.6539 4.6519 1.4786 11 6 2.1389 -1.1672 0.0005 12 8 3.3517 -1.1671 0.0010 13 6 1.3854 -2.4723 0.0005 14 6 2.3797 -3.6351 0.0018 15 8 1.6651 -4.8727 0.0024 16 6 2.4055 -6.0129 0.0030 17 6 3.7907 -5.9414 0.0088 18 6 4.5416 -7.1010 0.0047 19 6 3.9131 -8.3338 0.0053 20 17 4.8595 -9.7892 0.0072 21 6 2.5316 -8.4082 0.0049 22 6 1.7764 -7.2501 0.0033 23 17 0.0429 -7.3434 0.0035 24 1 -0.3634 -0.0741 1.0250 25 1 -0.3634 0.9247 -0.4484 26 1 -0.3634 -0.8506 -0.5767 27 1 0.0147 3.0517 1.5356 28 1 0.7590 -2.5302 -0.8896 29 1 0.7584 -2.5298 0.8904 30 1 3.0056 -3.5771 0.8922 31 1 3.0069 -3.5779 -0.8878 32 1 4.2821 -4.9796 0.0124 33 1 5.6201 -7.0453 0.0054 34 1 2.0429 -9.3713 0.0049 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263824317.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:30 Heat of formation + Delta-G solvation = -72.823938 kcal Electronic energy + Delta-G solvation = -20937.697388 eV Core-core repulsion = 17308.396816 eV Total energy + Delta-G solvation = -3629.300572 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.42259 -40.39242 -38.88325 -37.65970 -37.10194 -36.71802 -33.83635 -32.87925 -32.06405 -30.48701 -28.26319 -26.84553 -25.30398 -23.81033 -23.04247 -20.61437 -19.60482 -18.88431 -18.08470 -17.55654 -17.46761 -17.28430 -16.47311 -16.09285 -15.93475 -15.75327 -15.16470 -14.86041 -14.76451 -14.27963 -13.95984 -13.57780 -13.44538 -13.29877 -13.18523 -13.06252 -13.01233 -12.66640 -12.46210 -12.23592 -12.11384 -12.09210 -11.91948 -11.89023 -11.57865 -11.02058 -10.44643 -10.10607 -9.69501 -9.24723 -8.36050 -6.01437 -0.09328 -0.01798 0.83681 1.25855 1.35905 1.41822 1.55149 1.83245 1.98091 2.30284 2.32432 3.07301 3.15490 3.56855 3.66227 3.89173 3.92236 3.95760 4.07027 4.20509 4.39057 4.49065 4.59596 4.67559 4.77834 4.80768 4.97696 5.01121 5.03523 5.31136 5.36932 5.44211 6.07230 6.10072 6.44397 7.13338 7.43451 7.97382 8.67271 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.026009 B = 0.002529 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.292990 B =11068.300571 C =12058.755715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.460 5.460 3 C -0.344 4.344 4 H 0.074 0.926 5 C -0.003 4.003 6 N -0.896 5.896 7 Si 0.989 3.011 8 H -0.272 1.272 9 H -0.266 1.266 10 H -0.277 1.277 11 C 0.443 3.557 12 O -0.631 6.631 13 C -0.116 4.116 14 C 0.088 3.912 15 O -0.308 6.308 16 C 0.135 3.865 17 C -0.190 4.190 18 C -0.058 4.058 19 C -0.069 4.069 20 Cl -0.053 7.053 21 C -0.061 4.061 22 C -0.073 4.073 23 Cl -0.049 7.049 24 H 0.044 0.956 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.274 0.726 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.152 0.848 33 H 0.163 0.837 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.114 -20.751 -2.502 20.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.178 5.178 3 C -0.472 4.472 4 H 0.091 0.909 5 C -0.205 4.205 6 N -0.534 5.534 7 Si 0.813 3.187 8 H -0.197 1.197 9 H -0.191 1.191 10 H -0.202 1.202 11 C 0.232 3.768 12 O -0.519 6.519 13 C -0.156 4.156 14 C 0.013 3.987 15 O -0.222 6.222 16 C 0.087 3.913 17 C -0.209 4.209 18 C -0.077 4.077 19 C -0.096 4.096 20 Cl -0.024 7.024 21 C -0.080 4.080 22 C -0.101 4.101 23 Cl -0.020 7.020 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.129 0.871 29 H 0.122 0.878 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.170 0.830 33 H 0.180 0.820 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.229 -20.689 -2.409 20.865 hybrid contribution 0.282 1.062 0.095 1.103 sum 1.511 -19.627 -2.314 19.821 Atomic orbital electron populations 1.21490 0.79270 1.01024 1.00782 1.43823 1.06861 1.04656 1.62507 1.19648 1.00489 0.85954 1.41079 0.90853 1.26110 0.97021 1.03041 0.94308 1.70064 1.19696 1.30799 1.32857 0.84934 0.78388 0.77190 0.78184 1.19660 1.19086 1.20225 1.20579 0.87751 0.85932 0.82500 1.90484 1.15785 1.88058 1.57615 1.21246 0.98672 0.89571 1.06085 1.22376 0.93959 0.79671 1.02717 1.86067 1.35731 1.12670 1.87687 1.18994 0.90626 0.85939 0.95716 1.21443 0.91541 1.01001 1.06952 1.21198 1.01971 0.89254 0.95264 1.20667 0.91371 0.88562 1.09021 1.98379 1.71728 1.35236 1.97093 1.20900 0.91602 0.97979 0.97507 1.20104 0.86191 0.91681 1.12098 1.98377 1.08054 1.98498 1.97066 0.93705 0.92352 0.91193 0.91649 0.87084 0.87823 0.91440 0.91000 0.83042 0.81959 0.81581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.00 8.44 127.77 1.08 6.08 16 2 N -0.46 -23.14 3.01 -658.90 -1.98 -25.12 16 3 C -0.34 -19.16 9.24 84.04 0.78 -18.39 16 4 H 0.07 4.36 7.45 -2.91 -0.02 4.34 16 5 C 0.00 -0.15 5.04 84.93 0.43 0.28 16 6 N -0.90 -46.84 10.83 21.66 0.23 -46.60 16 7 Si 0.99 41.73 29.57 68.60 2.03 43.76 16 8 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 9 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 10 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 11 C 0.44 20.63 7.63 87.66 0.67 21.30 16 12 O -0.63 -33.72 15.69 -3.04 -0.05 -33.77 16 13 C -0.12 -3.90 4.68 29.85 0.14 -3.76 16 14 C 0.09 2.67 4.03 71.98 0.29 2.96 16 15 O -0.31 -8.66 9.60 -92.98 -0.89 -9.56 16 16 C 0.13 3.36 6.68 22.51 0.15 3.51 16 17 C -0.19 -4.18 9.04 22.36 0.20 -3.98 16 18 C -0.06 -1.05 9.82 22.28 0.22 -0.83 16 19 C -0.07 -1.23 6.32 22.33 0.14 -1.09 16 20 Cl -0.05 -0.83 28.95 -2.72 -0.08 -0.91 16 21 C -0.06 -1.11 9.61 22.30 0.21 -0.89 16 22 C -0.07 -1.64 6.33 22.41 0.14 -1.50 16 23 Cl -0.05 -1.09 28.50 -2.72 -0.08 -1.17 16 24 H 0.04 1.96 7.83 -2.39 -0.02 1.94 16 25 H 0.06 2.66 6.80 -2.39 -0.02 2.65 16 26 H 0.07 2.35 6.61 -2.39 -0.02 2.33 16 27 H 0.27 13.37 8.31 -92.70 -0.77 12.60 16 28 H 0.11 3.26 7.41 -2.39 -0.02 3.24 16 29 H 0.10 3.26 8.11 -2.38 -0.02 3.24 16 30 H 0.07 2.12 7.61 -2.39 -0.02 2.10 16 31 H 0.07 2.19 7.63 -2.39 -0.02 2.17 16 32 H 0.15 3.32 6.30 -2.91 -0.02 3.30 16 33 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 34 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -63.50 324.51 4.77 -58.72 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 1.14 Total: 10.95 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: 4.45 Total: 3.70 kcal Atomic # 7 Polarization: -69.98 SS G_CDS: -1.75 Total: -71.73 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -0.94 Total: -43.33 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 17 Polarization: -1.92 SS G_CDS: -0.16 Total: -2.08 kcal Total: -63.50 4.77 -58.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263824317.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.099 kcal (2) G-P(sol) polarization free energy of solvation -63.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds