Wall clock time and date at job start Tue Mar 31 2020 10:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36876 * 120.00086 * 2 1 4 4 H 1.08002 * 120.00426 * 161.88676 * 3 2 1 5 5 C 1.39042 * 120.00271 * 341.88341 * 3 2 1 6 6 N 1.31368 * 119.99560 * 342.89010 * 5 3 2 7 7 Si 1.86795 * 120.00352 * 162.88571 * 5 3 2 8 8 H 1.48502 * 109.47336 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.47274 * 120.00148 * 7 5 3 10 10 H 1.48505 * 109.47264 * 240.00085 * 7 5 3 11 11 C 1.34778 * 119.99978 * 179.97438 * 2 1 3 12 12 O 1.21600 * 120.00173 * 184.44269 * 11 2 1 13 13 C 1.47667 * 119.99766 * 4.45183 * 11 2 1 14 14 C 1.39705 * 120.13440 * 211.33709 * 13 11 2 15 15 C 1.37855 * 119.86045 * 179.97438 * 14 13 11 16 16 C 1.38548 * 120.13739 * 359.97438 * 15 14 13 17 17 Cl 1.73603 * 119.86110 * 179.97438 * 16 15 14 18 18 C 1.38508 * 120.28090 * 0.02562 * 16 15 14 19 19 S 1.76194 * 119.93491 * 179.97438 * 18 16 15 20 20 C 1.81406 * 104.44956 * 295.00021 * 19 18 16 21 21 O 1.42092 * 104.27860 * 178.92619 * 19 18 16 22 22 O 1.42106 * 104.27880 * 51.06787 * 19 18 16 23 23 C 1.37903 * 120.13228 * 0.24950 * 18 16 15 24 24 H 1.08995 * 109.47501 * 209.94568 * 1 2 3 25 25 H 1.09001 * 109.47280 * 329.94795 * 1 2 3 26 26 H 1.09001 * 109.47224 * 89.94754 * 1 2 3 27 27 H 0.97006 * 119.99688 * 180.02562 * 6 5 3 28 28 H 1.07996 * 120.07387 * 359.95040 * 14 13 11 29 29 H 1.07999 * 119.93020 * 179.97438 * 15 14 13 30 30 H 1.09005 * 109.46406 * 299.99762 * 20 19 18 31 31 H 1.08994 * 109.47101 * 59.99420 * 20 19 18 32 32 H 1.08997 * 109.46956 * 180.02562 * 20 19 18 33 33 H 1.07996 * 120.06608 * 179.74964 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1854 0.0000 4 1 3.1892 1.2086 0.2908 5 6 1.5059 2.3597 -0.3744 6 7 0.3738 2.3052 -1.0385 7 14 2.2512 4.0147 0.0669 8 1 3.5198 3.8042 0.8096 9 1 2.5267 4.7805 -1.1752 10 1 1.2999 4.7753 0.9166 11 6 2.1389 -1.1672 0.0005 12 8 3.3521 -1.1688 0.0821 13 6 1.4038 -2.4441 -0.0982 14 6 1.9048 -3.5915 0.5217 15 6 1.2137 -4.7805 0.4264 16 6 0.0244 -4.8389 -0.2819 17 17 -0.8397 -6.3401 -0.3979 18 6 -0.4776 -3.7049 -0.8987 19 16 -1.9906 -3.7897 -1.7977 20 6 -1.6291 -4.8963 -3.1889 21 8 -2.1996 -2.4618 -2.2580 22 8 -2.9005 -4.4040 -0.8953 23 6 0.2073 -2.5109 -0.8154 24 1 -0.3634 -0.8904 0.5130 25 1 -0.3634 0.8895 0.5146 26 1 -0.3634 0.0009 -1.0277 27 1 -0.0750 3.1245 -1.3000 28 1 2.8317 -3.5473 1.0741 29 1 1.6002 -5.6683 0.9048 30 1 -0.8225 -4.4744 -3.7886 31 1 -1.3267 -5.8718 -2.8081 32 1 -2.5206 -5.0071 -3.8061 33 1 -0.1830 -1.6283 -1.3002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263831817.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:18 Heat of formation + Delta-G solvation = -53.166916 kcal Electronic energy + Delta-G solvation = -22389.143152 eV Core-core repulsion = 18762.738679 eV Total energy + Delta-G solvation = -3626.404473 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.032 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.82040 -37.96320 -37.10888 -36.54232 -35.91035 -34.94079 -32.17844 -31.33949 -30.63922 -29.61248 -26.55320 -25.20099 -23.26391 -22.97466 -20.29352 -18.68916 -17.65915 -17.01396 -16.68819 -16.26465 -16.20000 -15.73902 -15.03612 -14.94352 -14.31135 -14.18412 -13.87794 -13.61121 -13.38165 -13.17130 -13.06745 -12.42868 -12.16742 -12.04769 -11.96224 -11.90977 -11.62925 -11.52113 -11.38250 -11.20117 -11.01577 -10.87848 -10.51684 -10.43975 -10.39391 -9.40904 -9.16999 -8.80525 -8.54119 -7.92668 -6.54597 -3.98995 -0.00556 0.65387 1.08346 1.74518 2.76869 2.99742 3.17445 3.19975 3.24421 3.75838 3.97114 4.09585 4.12019 4.57568 4.61050 4.63754 4.93167 4.98398 5.09852 5.34682 5.36793 5.48063 5.50417 5.74409 5.86670 6.06823 6.19818 6.42682 6.67359 6.70293 7.07622 7.38536 7.90423 8.27325 8.97777 9.18643 9.76358 10.48334 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.021091 B = 0.004464 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.242665 B = 6270.462151 C = 7279.641296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.420 5.420 3 C -0.306 4.306 4 H 0.108 0.892 5 C 0.032 3.968 6 N -0.861 5.861 7 Si 0.930 3.070 8 H -0.265 1.265 9 H -0.279 1.279 10 H -0.278 1.278 11 C 0.460 3.540 12 O -0.589 6.589 13 C -0.102 4.102 14 C -0.020 4.020 15 C -0.131 4.131 16 C 0.041 3.959 17 Cl -0.059 7.059 18 C -0.660 4.660 19 S 2.493 3.507 20 C -0.653 4.653 21 O -0.927 6.927 22 O -0.925 6.925 23 C -0.002 4.002 24 H 0.035 0.965 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.274 0.726 28 H 0.146 0.854 29 H 0.142 0.858 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.288 -14.277 -2.238 15.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.134 5.134 3 C -0.434 4.434 4 H 0.126 0.874 5 C -0.174 4.174 6 N -0.498 5.498 7 Si 0.756 3.244 8 H -0.190 1.190 9 H -0.205 1.205 10 H -0.203 1.203 11 C 0.250 3.750 12 O -0.477 6.477 13 C -0.107 4.107 14 C -0.039 4.039 15 C -0.151 4.151 16 C 0.012 3.988 17 Cl -0.030 7.030 18 C -0.746 4.746 19 S 2.671 3.329 20 C -0.803 4.803 21 O -0.924 6.924 22 O -0.922 6.922 23 C -0.021 4.021 24 H 0.053 0.947 25 H 0.099 0.901 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.164 0.836 29 H 0.160 0.840 30 H 0.154 0.846 31 H 0.149 0.851 32 H 0.152 0.848 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -5.689 -13.781 -2.074 15.053 hybrid contribution 0.877 0.248 0.006 0.911 sum -4.811 -13.534 -2.068 14.512 Atomic orbital electron populations 1.22039 0.80845 1.00185 1.01961 1.43617 1.05797 1.04977 1.59058 1.19851 0.97742 0.82746 1.43028 0.87398 1.25441 0.96402 1.00407 0.95113 1.70032 1.17208 1.29658 1.32931 0.85801 0.79337 0.80689 0.78571 1.18951 1.20469 1.20326 1.17650 0.87198 0.82762 0.87396 1.90622 1.13051 1.86443 1.57535 1.20627 0.95013 0.96399 0.98614 1.21519 0.98334 0.90402 0.93680 1.21032 0.94102 0.99220 1.00733 1.20485 0.93684 0.85878 0.98722 1.98397 1.75899 1.32214 1.96519 1.30329 1.25230 0.98625 1.20401 1.05478 0.74481 0.76114 0.76830 1.30299 1.12874 1.17380 1.19796 1.93625 1.83684 1.33071 1.82016 1.93618 1.59340 1.78307 1.60920 1.21884 0.91541 0.96149 0.92547 0.94702 0.90143 0.91122 0.91557 0.83586 0.83998 0.84639 0.85072 0.84805 0.81124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.09 7.06 59.84 0.42 2.51 16 2 N -0.42 -10.62 3.02 -123.34 -0.37 -10.99 16 3 C -0.31 -8.26 9.36 -15.00 -0.14 -8.40 16 4 H 0.11 3.04 7.33 -52.49 -0.38 2.65 16 5 C 0.03 0.82 5.00 -17.45 -0.09 0.73 16 6 N -0.86 -22.08 10.69 55.50 0.59 -21.49 16 7 Si 0.93 19.82 29.59 -169.99 -5.03 14.79 16 8 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 9 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 10 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 11 C 0.46 11.20 7.37 -12.41 -0.09 11.11 16 12 O -0.59 -16.04 16.39 5.28 0.09 -15.95 16 13 C -0.10 -1.98 5.30 -104.97 -0.56 -2.53 16 14 C -0.02 -0.32 9.60 -39.17 -0.38 -0.69 16 15 C -0.13 -1.75 9.81 -39.61 -0.39 -2.13 16 16 C 0.04 0.56 6.29 -39.37 -0.25 0.31 16 17 Cl -0.06 -0.69 24.79 -51.86 -1.29 -1.98 16 18 C -0.66 -9.88 5.58 -39.60 -0.22 -10.10 16 19 S 2.49 32.80 5.23 -107.50 -0.56 32.24 16 20 C -0.65 -5.45 10.60 101.05 1.07 -4.38 16 21 O -0.93 -15.14 16.73 -57.54 -0.96 -16.11 16 22 O -0.92 -13.93 16.45 -57.54 -0.95 -14.88 16 23 C 0.00 -0.03 7.07 -39.17 -0.28 -0.31 16 24 H 0.03 0.69 5.87 -51.93 -0.30 0.38 16 25 H 0.08 1.88 6.76 -51.93 -0.35 1.53 16 26 H 0.07 1.62 6.33 -51.93 -0.33 1.29 16 27 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 28 H 0.15 2.22 7.94 -52.49 -0.42 1.80 16 29 H 0.14 1.43 8.06 -52.49 -0.42 1.00 16 30 H 0.13 0.95 8.14 -51.92 -0.42 0.53 16 31 H 0.13 0.99 6.29 -51.93 -0.33 0.66 16 32 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.17 3.22 4.10 -52.49 -0.22 3.01 16 LS Contribution 304.50 15.07 4.59 4.59 Total: -1.00 -32.84 304.50 -7.51 -40.35 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -2.73 Total: 3.32 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -0.89 Total: -13.88 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: 0.22 Total: -32.48 kcal Atomic # 8 Polarization: -45.12 SS G_CDS: -1.82 Total: -46.94 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.79 kcal Atomic # 16 Polarization: 32.80 SS G_CDS: -0.56 Total: 32.24 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.29 Total: -1.98 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.84 -7.51 -40.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263831817.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.819 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds