Wall clock time and date at job start Tue Mar 31 2020 10:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36876 * 120.00086 * 2 1 4 4 H 1.08002 * 120.00426 * 161.88676 * 3 2 1 5 5 C 1.39042 * 120.00271 * 341.88341 * 3 2 1 6 6 N 1.31368 * 119.99560 * 342.89010 * 5 3 2 7 7 Si 1.86795 * 120.00352 * 162.88571 * 5 3 2 8 8 H 1.48502 * 109.47336 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.47274 * 120.00148 * 7 5 3 10 10 H 1.48505 * 109.47264 * 240.00085 * 7 5 3 11 11 C 1.34778 * 119.99978 * 179.97438 * 2 1 3 12 12 O 1.21600 * 120.00173 * 184.44269 * 11 2 1 13 13 C 1.47667 * 119.99766 * 4.45183 * 11 2 1 14 14 C 1.39705 * 120.13440 * 211.33709 * 13 11 2 15 15 C 1.37855 * 119.86045 * 179.97438 * 14 13 11 16 16 C 1.38548 * 120.13739 * 359.97438 * 15 14 13 17 17 Cl 1.73603 * 119.86110 * 179.97438 * 16 15 14 18 18 C 1.38508 * 120.28090 * 0.02562 * 16 15 14 19 19 S 1.76194 * 119.93491 * 179.97438 * 18 16 15 20 20 C 1.81406 * 104.44956 * 295.00021 * 19 18 16 21 21 O 1.42092 * 104.27860 * 178.92619 * 19 18 16 22 22 O 1.42106 * 104.27880 * 51.06787 * 19 18 16 23 23 C 1.37903 * 120.13228 * 0.24950 * 18 16 15 24 24 H 1.08995 * 109.47501 * 209.94568 * 1 2 3 25 25 H 1.09001 * 109.47280 * 329.94795 * 1 2 3 26 26 H 1.09001 * 109.47224 * 89.94754 * 1 2 3 27 27 H 0.97006 * 119.99688 * 180.02562 * 6 5 3 28 28 H 1.07996 * 120.07387 * 359.95040 * 14 13 11 29 29 H 1.07999 * 119.93020 * 179.97438 * 15 14 13 30 30 H 1.09005 * 109.46406 * 299.99762 * 20 19 18 31 31 H 1.08994 * 109.47101 * 59.99420 * 20 19 18 32 32 H 1.08997 * 109.46956 * 180.02562 * 20 19 18 33 33 H 1.07996 * 120.06608 * 179.74964 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1854 0.0000 4 1 3.1892 1.2086 0.2908 5 6 1.5059 2.3597 -0.3744 6 7 0.3738 2.3052 -1.0385 7 14 2.2512 4.0147 0.0669 8 1 3.5198 3.8042 0.8096 9 1 2.5267 4.7805 -1.1752 10 1 1.2999 4.7753 0.9166 11 6 2.1389 -1.1672 0.0005 12 8 3.3521 -1.1688 0.0821 13 6 1.4038 -2.4441 -0.0982 14 6 1.9048 -3.5915 0.5217 15 6 1.2137 -4.7805 0.4264 16 6 0.0244 -4.8389 -0.2819 17 17 -0.8397 -6.3401 -0.3979 18 6 -0.4776 -3.7049 -0.8987 19 16 -1.9906 -3.7897 -1.7977 20 6 -1.6291 -4.8963 -3.1889 21 8 -2.1996 -2.4618 -2.2580 22 8 -2.9005 -4.4040 -0.8953 23 6 0.2073 -2.5109 -0.8154 24 1 -0.3634 -0.8904 0.5130 25 1 -0.3634 0.8895 0.5146 26 1 -0.3634 0.0009 -1.0277 27 1 -0.0750 3.1245 -1.3000 28 1 2.8317 -3.5473 1.0741 29 1 1.6002 -5.6683 0.9048 30 1 -0.8225 -4.4744 -3.7886 31 1 -1.3267 -5.8718 -2.8081 32 1 -2.5206 -5.0071 -3.8061 33 1 -0.1830 -1.6283 -1.3002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263831817.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:17 Heat of formation + Delta-G solvation = -77.069505 kcal Electronic energy + Delta-G solvation = -22390.179646 eV Core-core repulsion = 18762.738679 eV Total energy + Delta-G solvation = -3627.440967 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.032 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.35637 -39.51102 -38.26280 -37.67539 -37.03784 -36.88003 -34.00427 -32.61738 -32.10518 -30.37922 -28.40616 -27.00706 -24.63183 -24.37547 -21.81975 -19.88201 -19.24028 -18.73625 -18.14522 -17.44614 -17.36238 -17.09057 -16.67375 -16.36175 -15.98542 -15.72210 -15.11829 -14.97112 -14.74641 -14.12375 -14.03554 -13.88178 -13.72020 -13.59384 -13.30507 -13.17633 -13.09820 -12.89198 -12.76434 -12.59453 -12.53674 -12.31907 -12.12263 -11.96759 -11.68172 -11.08714 -10.66418 -10.59278 -9.97595 -9.87925 -8.46934 -6.04366 -0.99590 -0.60540 -0.20548 0.62037 1.32746 1.40945 1.55626 1.65983 1.78176 2.21146 2.37967 2.76871 2.87510 3.03421 3.12384 3.51497 3.69635 3.89899 3.98706 4.04610 4.20136 4.22670 4.35828 4.48635 4.62667 4.80164 4.83720 4.87252 5.10550 5.20228 5.36970 5.40453 5.94717 6.32186 7.01211 7.26822 7.83525 8.56208 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.021091 B = 0.004464 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.242665 B = 6270.462151 C = 7279.641296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.438 5.438 3 C -0.351 4.351 4 H 0.083 0.917 5 C 0.001 3.999 6 N -0.883 5.883 7 Si 0.996 3.004 8 H -0.271 1.271 9 H -0.272 1.272 10 H -0.264 1.264 11 C 0.458 3.542 12 O -0.628 6.628 13 C -0.132 4.132 14 C -0.016 4.016 15 C -0.115 4.115 16 C 0.051 3.949 17 Cl -0.028 7.028 18 C -0.660 4.660 19 S 2.486 3.514 20 C -0.625 4.625 21 O -0.968 6.968 22 O -0.948 6.948 23 C -0.010 4.010 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.280 0.720 28 H 0.152 0.848 29 H 0.185 0.815 30 H 0.155 0.845 31 H 0.147 0.853 32 H 0.168 0.832 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.174 -17.061 -2.786 18.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.154 5.154 3 C -0.478 4.478 4 H 0.101 0.899 5 C -0.202 4.202 6 N -0.520 5.520 7 Si 0.819 3.181 8 H -0.195 1.195 9 H -0.197 1.197 10 H -0.189 1.189 11 C 0.249 3.751 12 O -0.518 6.518 13 C -0.136 4.136 14 C -0.036 4.036 15 C -0.134 4.134 16 C 0.023 3.977 17 Cl 0.002 6.998 18 C -0.744 4.744 19 S 2.667 3.333 20 C -0.779 4.779 21 O -0.965 6.965 22 O -0.945 6.945 23 C -0.029 4.029 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.170 0.830 29 H 0.202 0.798 30 H 0.174 0.826 31 H 0.166 0.834 32 H 0.186 0.814 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.600 -16.558 -2.581 18.011 hybrid contribution 1.076 0.778 0.092 1.331 sum -5.524 -15.781 -2.489 16.904 Atomic orbital electron populations 1.21894 0.79623 1.00441 1.01404 1.43783 1.06626 1.05030 1.59928 1.19781 0.97458 0.84494 1.46062 0.89923 1.26217 0.96744 1.03102 0.94185 1.70095 1.18018 1.30781 1.33125 0.84846 0.78449 0.76365 0.78472 1.19493 1.19681 1.18902 1.18436 0.87117 0.84197 0.85370 1.90562 1.14955 1.87536 1.58729 1.20291 0.96320 0.95046 1.01973 1.21641 0.98609 0.90224 0.93093 1.21406 0.93180 0.99320 0.99455 1.20703 0.93561 0.86625 0.96856 1.98418 1.75197 1.29941 1.96262 1.30562 1.25380 0.97920 1.20569 1.05660 0.73596 0.76249 0.77841 1.30110 1.15414 1.15671 1.16722 1.93584 1.84011 1.36388 1.82551 1.93586 1.59669 1.78339 1.62900 1.21605 0.91421 0.96977 0.92910 0.92468 0.91620 0.92143 0.90975 0.83049 0.79764 0.82638 0.83425 0.81368 0.82974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 5.19 7.06 127.77 0.90 6.09 16 2 N -0.44 -23.50 3.02 -662.40 -2.00 -25.50 16 3 C -0.35 -20.04 9.36 84.10 0.79 -19.26 16 4 H 0.08 5.00 7.33 -2.91 -0.02 4.98 16 5 C 0.00 0.07 5.00 84.96 0.42 0.50 16 6 N -0.88 -46.81 10.69 21.68 0.23 -46.58 16 7 Si 1.00 41.75 29.59 68.60 2.03 43.78 16 8 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 9 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 10 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 11 C 0.46 23.44 7.37 86.73 0.64 24.08 16 12 O -0.63 -36.03 16.39 -4.03 -0.07 -36.10 16 13 C -0.13 -5.23 5.30 -20.09 -0.11 -5.34 16 14 C -0.02 -0.50 9.60 22.53 0.22 -0.29 16 15 C -0.11 -2.66 9.81 22.25 0.22 -2.44 16 16 C 0.05 1.23 6.29 22.41 0.14 1.37 16 17 Cl -0.03 -0.52 24.79 -2.72 -0.07 -0.59 16 18 C -0.66 -18.77 5.58 22.25 0.12 -18.65 16 19 S 2.49 60.95 5.23 -56.49 -0.30 60.66 16 20 C -0.62 -7.60 10.60 113.37 1.20 -6.39 16 21 O -0.97 -31.67 16.73 -127.65 -2.14 -33.81 16 22 O -0.95 -26.71 16.45 -127.65 -2.10 -28.81 16 23 C -0.01 -0.34 7.07 22.53 0.16 -0.18 16 24 H 0.06 2.38 5.87 -2.39 -0.01 2.37 16 25 H 0.07 3.24 6.76 -2.39 -0.02 3.22 16 26 H 0.06 2.96 6.33 -2.39 -0.02 2.94 16 27 H 0.28 13.72 8.31 -92.70 -0.77 12.95 16 28 H 0.15 4.49 7.94 -2.91 -0.02 4.47 16 29 H 0.19 2.73 8.06 -2.91 -0.02 2.71 16 30 H 0.16 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.15 1.42 6.29 -2.39 -0.02 1.40 16 32 H 0.17 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.15 6.05 4.10 -2.91 -0.01 6.03 16 Total: -1.00 -76.10 304.50 1.48 -74.63 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 1.17 Total: 12.83 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: 4.71 Total: -20.52 kcal Atomic # 7 Polarization: -70.31 SS G_CDS: -1.77 Total: -72.07 kcal Atomic # 8 Polarization: -94.41 SS G_CDS: -4.30 Total: -98.71 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 16 Polarization: 60.95 SS G_CDS: -0.30 Total: 60.66 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -0.07 Total: -0.59 kcal Total: -76.10 1.48 -74.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263831817.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.442 kcal (2) G-P(sol) polarization free energy of solvation -76.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds