Wall clock time and date at job start Tue Mar 31 2020 11:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.46928 * 2 1 4 4 O 1.42899 * 109.47328 * 240.00108 * 2 1 3 5 5 C 1.35900 * 116.99782 * 85.30783 * 4 2 1 6 6 C 1.38719 * 120.03807 * 174.27959 * 5 4 2 7 7 C 1.38274 * 119.95416 * 179.78868 * 6 5 4 8 8 Cl 1.73601 * 119.97756 * 180.20776 * 7 6 5 9 9 C 1.38368 * 120.04073 * 0.45952 * 7 6 5 10 10 C 1.38357 * 120.08563 * 359.79051 * 9 7 6 11 11 Cl 1.73608 * 119.98086 * 179.97438 * 10 9 7 12 12 C 1.38270 * 120.04593 * 359.97438 * 10 9 7 13 13 C 1.50703 * 109.47318 * 119.99934 * 2 1 3 14 14 O 1.21297 * 119.99839 * 115.26661 * 13 2 1 15 15 N 1.34775 * 120.00189 * 295.26963 * 13 2 1 16 16 C 1.46503 * 120.00109 * 176.51105 * 15 13 2 17 17 C 1.37094 * 119.99899 * 356.50667 * 15 13 2 18 18 H 1.08009 * 120.00105 * 1.59508 * 17 15 13 19 19 C 1.38950 * 120.00012 * 181.87398 * 17 15 13 20 20 N 1.31401 * 120.00132 * 349.22524 * 19 17 15 21 21 Si 1.86805 * 120.00162 * 169.22675 * 19 17 15 22 22 H 1.48504 * 109.47068 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47322 * 119.99678 * 21 19 17 24 24 H 1.48500 * 109.46962 * 240.00154 * 21 19 17 25 25 H 1.08997 * 109.47322 * 65.55312 * 1 2 3 26 26 H 1.09009 * 109.47116 * 185.55089 * 1 2 3 27 27 H 1.08995 * 109.47236 * 305.54498 * 1 2 3 28 28 H 1.07993 * 120.03071 * 0.02562 * 6 5 4 29 29 H 1.08005 * 119.95452 * 179.76410 * 9 7 6 30 30 H 1.07997 * 120.02590 * 179.97438 * 12 10 9 31 31 H 1.08995 * 109.46643 * 242.62477 * 16 15 13 32 32 H 1.09002 * 109.47024 * 2.61915 * 16 15 13 33 33 H 1.08993 * 109.46821 * 122.62113 * 16 15 13 34 34 H 0.97001 * 120.00207 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1186 0.0642 -2.3025 6 6 2.6852 -0.4930 -3.4394 7 6 2.7946 0.2579 -4.5954 8 17 3.4987 -0.4407 -6.0202 9 6 2.3480 1.5673 -4.6156 10 6 1.7873 2.1265 -3.4810 11 17 1.2285 3.7699 -3.5092 12 6 1.6718 1.3773 -2.3246 13 6 2.0323 -0.7104 1.2305 14 8 2.6572 -1.7443 1.1212 15 7 1.7873 -0.1970 2.4523 16 6 2.2087 -0.9260 3.6512 17 6 1.1437 1.0074 2.5733 18 1 0.8101 1.5326 1.6903 19 6 0.9256 1.5553 3.8314 20 7 1.1403 0.8339 4.9084 21 14 0.3272 3.3176 3.9918 22 1 0.1639 3.9099 2.6398 23 1 -0.9774 3.3348 4.7010 24 1 1.3198 4.1093 4.7619 25 1 -0.3634 0.4253 -0.9355 26 1 -0.3634 -1.0229 0.0994 27 1 -0.3633 0.5974 0.8361 28 1 3.0372 -1.5139 -3.4231 29 1 2.4376 2.1538 -5.5181 30 1 1.2344 1.8143 -1.4391 31 1 1.3317 -1.1948 4.2399 32 1 2.7406 -1.8311 3.3578 33 1 2.8672 -0.2946 4.2475 34 1 0.9877 1.2162 5.7868 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263902625.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:03 Heat of formation + Delta-G solvation = -55.470674 kcal Electronic energy + Delta-G solvation = -21863.869925 eV Core-core repulsion = 18235.321847 eV Total energy + Delta-G solvation = -3628.548078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.74865 -40.38748 -38.83362 -37.83660 -37.10065 -36.78254 -33.73565 -32.97850 -31.66706 -30.93417 -28.34038 -26.86727 -25.16952 -24.02378 -23.21753 -21.07525 -19.81255 -19.32181 -17.92431 -17.29967 -17.16787 -16.78852 -16.34914 -16.11721 -15.93020 -15.79169 -15.39631 -14.85330 -14.69399 -14.40029 -13.70995 -13.58111 -13.51313 -13.40501 -13.23370 -13.08411 -12.77202 -12.64304 -12.57065 -12.28390 -12.19421 -12.02328 -11.99660 -11.98753 -11.56276 -11.08309 -10.38608 -9.99814 -9.91100 -9.44634 -8.27863 -5.93807 -0.20084 0.03142 0.63661 1.13737 1.39931 1.49721 1.61823 1.82460 1.87589 2.29326 2.31277 3.03626 3.10829 3.63370 3.83085 3.85776 3.89642 3.97800 4.02518 4.10086 4.26895 4.65643 4.71642 4.81972 4.88152 4.93894 4.98736 5.11573 5.15916 5.20317 5.36753 5.42713 5.67968 6.15655 6.36728 7.03881 7.46450 7.86171 8.67556 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.015778 B = 0.004002 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.192100 B = 6994.979666 C = 8514.504645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.093 3.907 3 H 0.102 0.898 4 O -0.301 6.301 5 C 0.147 3.853 6 C -0.149 4.149 7 C 0.016 3.984 8 Cl -0.040 7.040 9 C -0.138 4.138 10 C 0.016 3.984 11 Cl -0.044 7.044 12 C -0.204 4.204 13 C 0.435 3.565 14 O -0.635 6.635 15 N -0.444 5.444 16 C 0.135 3.865 17 C -0.359 4.359 18 H 0.127 0.873 19 C -0.004 4.004 20 N -0.896 5.896 21 Si 0.991 3.009 22 H -0.248 1.248 23 H -0.278 1.278 24 H -0.282 1.282 25 H 0.088 0.912 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.148 0.852 29 H 0.167 0.833 30 H 0.152 0.848 31 H 0.061 0.939 32 H 0.031 0.969 33 H 0.054 0.946 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.288 6.361 -16.782 17.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.035 3.965 3 H 0.120 0.880 4 O -0.214 6.214 5 C 0.100 3.900 6 C -0.169 4.169 7 C -0.011 4.011 8 Cl -0.010 7.010 9 C -0.157 4.157 10 C -0.011 4.011 11 Cl -0.015 7.015 12 C -0.223 4.223 13 C 0.223 3.777 14 O -0.525 6.525 15 N -0.162 5.162 16 C -0.008 4.008 17 C -0.486 4.486 18 H 0.144 0.856 19 C -0.207 4.207 20 N -0.534 5.534 21 Si 0.814 3.186 22 H -0.171 1.171 23 H -0.204 1.204 24 H -0.208 1.208 25 H 0.107 0.893 26 H 0.074 0.926 27 H 0.117 0.883 28 H 0.166 0.834 29 H 0.185 0.815 30 H 0.170 0.830 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.953 5.763 -16.663 17.658 hybrid contribution -0.170 0.601 0.783 1.002 sum -1.123 6.365 -15.880 17.145 Atomic orbital electron populations 1.22336 0.91384 1.03795 1.04952 1.21991 0.96612 0.96160 0.81787 0.88015 1.86201 1.80843 1.37814 1.16504 1.18878 0.94234 0.89978 0.86867 1.20427 1.03965 1.02431 0.90067 1.20306 0.99064 0.93217 0.88502 1.98390 1.82032 1.84038 1.36587 1.20963 1.01594 0.93914 0.99228 1.20431 0.99264 0.87177 0.94210 1.98395 1.87594 1.16875 1.98655 1.21408 1.07033 0.93778 1.00103 1.20070 0.85559 0.86943 0.85105 1.90526 1.47411 1.27755 1.86759 1.43863 1.48894 1.19350 1.04080 1.21368 0.99755 0.93830 0.85820 1.20369 1.37029 0.95616 0.95562 0.85572 1.26216 0.96451 1.03532 0.94455 1.70323 1.46900 1.37217 0.98980 0.84892 0.77488 0.76668 0.79595 1.17059 1.20411 1.20808 0.89348 0.92617 0.88273 0.83425 0.81518 0.83029 0.92028 0.95006 0.92718 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.47 8.73 71.98 0.63 -4.85 16 2 C 0.09 3.58 1.80 29.85 0.05 3.64 16 3 H 0.10 3.60 5.68 -2.39 -0.01 3.58 16 4 O -0.30 -11.49 9.33 -73.43 -0.69 -12.17 16 5 C 0.15 4.48 6.58 22.50 0.15 4.63 16 6 C -0.15 -3.98 9.77 22.39 0.22 -3.76 16 7 C 0.02 0.36 6.32 22.31 0.14 0.50 16 8 Cl -0.04 -0.75 28.95 -2.72 -0.08 -0.83 16 9 C -0.14 -2.77 9.61 22.33 0.21 -2.55 16 10 C 0.02 0.37 6.32 22.31 0.14 0.51 16 11 Cl -0.04 -0.89 28.95 -2.72 -0.08 -0.97 16 12 C -0.20 -5.36 8.01 22.39 0.18 -5.18 16 13 C 0.43 21.25 7.06 87.66 0.62 21.87 16 14 O -0.64 -35.49 15.84 15.91 0.25 -35.24 16 15 N -0.44 -22.09 3.03 -658.89 -1.99 -24.09 16 16 C 0.14 6.80 8.88 127.77 1.13 7.94 16 17 C -0.36 -16.65 8.27 84.04 0.70 -15.95 16 18 H 0.13 5.15 4.86 -2.91 -0.01 5.13 16 19 C 0.00 -0.19 5.41 84.93 0.46 0.27 16 20 N -0.90 -44.28 9.54 21.66 0.21 -44.08 16 21 Si 0.99 36.01 29.57 68.60 2.03 38.03 16 22 H -0.25 -8.18 7.11 99.48 0.71 -7.48 16 23 H -0.28 -10.08 7.11 99.48 0.71 -9.38 16 24 H -0.28 -10.44 7.11 99.48 0.71 -9.74 16 25 H 0.09 2.33 7.03 -2.39 -0.02 2.31 16 26 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 27 H 0.10 3.30 5.55 -2.39 -0.01 3.29 16 28 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 29 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 30 H 0.15 3.88 5.52 -2.91 -0.02 3.86 16 31 H 0.06 3.16 7.03 -2.39 -0.02 3.15 16 32 H 0.03 1.59 6.90 -2.39 -0.02 1.57 16 33 H 0.05 2.80 7.10 -2.39 -0.02 2.78 16 34 H 0.27 12.67 8.31 -92.71 -0.77 11.90 16 Total: -1.00 -58.51 315.51 5.44 -53.07 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 1.16 Total: 19.21 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 4.63 Total: 7.06 kcal Atomic # 7 Polarization: -66.38 SS G_CDS: -1.79 Total: -68.16 kcal Atomic # 8 Polarization: -46.97 SS G_CDS: -0.43 Total: -47.41 kcal Atomic # 14 Polarization: 36.01 SS G_CDS: 2.03 Total: 38.03 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -0.16 Total: -1.80 kcal Total: -58.51 5.44 -53.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263902625.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.404 kcal (2) G-P(sol) polarization free energy of solvation -58.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds