Wall clock time and date at job start Tue Mar 31 2020 10:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36879 * 120.00191 * 2 1 4 4 H 1.08004 * 120.00045 * 174.63915 * 3 2 1 5 5 C 1.39046 * 120.00154 * 354.64349 * 3 2 1 6 6 N 1.31364 * 119.99777 * 5.04806 * 5 3 2 7 7 Si 1.86802 * 119.99905 * 185.05095 * 5 3 2 8 8 H 1.48495 * 109.47210 * 59.99846 * 7 5 3 9 9 H 1.48501 * 109.46683 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46782 * 299.99793 * 7 5 3 11 11 C 1.34777 * 119.99753 * 180.02562 * 2 1 3 12 12 O 1.21600 * 120.00156 * 185.90701 * 11 2 1 13 13 C 1.47651 * 120.00007 * 5.63312 * 11 2 1 14 14 C 1.39688 * 120.16325 * 54.53340 * 13 11 2 15 15 C 1.37885 * 119.86177 * 179.72387 * 14 13 11 16 16 S 1.76204 * 119.90644 * 180.29683 * 15 14 13 17 17 C 1.81395 * 104.44954 * 270.25319 * 16 15 14 18 18 O 1.42099 * 104.27435 * 26.32513 * 16 15 14 19 19 O 1.42097 * 104.27315 * 154.18271 * 16 15 14 20 20 C 1.38435 * 120.18531 * 0.54908 * 15 14 13 21 21 C 1.38290 * 120.32878 * 359.72800 * 20 15 14 22 22 C 1.38130 * 120.13855 * 359.97438 * 21 20 15 23 23 Cl 1.73600 * 120.09699 * 179.97438 * 22 21 20 24 24 H 1.08992 * 109.47628 * 185.12387 * 1 2 3 25 25 H 1.09004 * 109.47027 * 305.12879 * 1 2 3 26 26 H 1.08998 * 109.46959 * 65.11901 * 1 2 3 27 27 H 0.97000 * 120.00012 * 179.97438 * 6 5 3 28 28 H 1.08001 * 120.06885 * 359.97438 * 14 13 11 29 29 H 1.09007 * 109.46993 * 59.99895 * 17 16 15 30 30 H 1.08999 * 109.47170 * 180.02562 * 17 16 15 31 31 H 1.09006 * 109.47001 * 300.00498 * 17 16 15 32 32 H 1.07995 * 119.83378 * 179.69925 * 20 15 14 33 33 H 1.07996 * 119.92797 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1854 0.0000 4 1 3.2259 1.1874 0.0874 5 6 1.4588 2.3870 -0.1124 6 7 0.1452 2.3914 -0.1187 7 14 2.3991 3.9949 -0.2545 8 1 3.2585 3.9604 -1.4650 9 1 1.4383 5.1221 -0.3620 10 1 3.2476 4.1801 0.9500 11 6 2.1388 -1.1672 -0.0005 12 8 3.3500 -1.1702 0.1079 13 6 1.4059 -2.4427 -0.1266 14 6 0.5357 -2.6491 -1.1997 15 6 -0.1413 -3.8448 -1.3144 16 16 -1.2333 -4.1094 -2.6717 17 6 -2.8405 -3.5083 -2.0835 18 8 -0.7295 -3.2639 -3.6967 19 8 -1.2572 -5.5210 -2.8322 20 6 0.0305 -4.8360 -0.3634 21 6 0.8857 -4.6379 0.7051 22 6 1.5753 -3.4476 0.8300 23 17 2.6480 -3.1997 2.1722 24 1 -0.3634 -1.0234 0.0918 25 1 -0.3633 0.5914 0.8405 26 1 -0.3633 0.4324 -0.9323 27 1 -0.3366 3.2297 -0.1968 28 1 0.3965 -1.8753 -1.9401 29 1 -2.7611 -2.4524 -1.8249 30 1 -3.5856 -3.6354 -2.8688 31 1 -3.1407 -4.0764 -1.2029 32 1 -0.5063 -5.7685 -0.4563 33 1 1.0145 -5.4154 1.4435 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265884335.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:07 Heat of formation + Delta-G solvation = -83.284944 kcal Electronic energy + Delta-G solvation = -22321.444150 eV Core-core repulsion = 18693.733662 eV Total energy + Delta-G solvation = -3627.710488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.032 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.23452 -39.37630 -38.13439 -37.61865 -36.96795 -36.77172 -33.84444 -32.30997 -32.25794 -30.20061 -28.37945 -26.76122 -24.64301 -24.32331 -21.72996 -19.79462 -19.18603 -18.74635 -17.84493 -17.55599 -17.25976 -17.10064 -16.51011 -16.33300 -16.01959 -15.43540 -15.14917 -14.74412 -14.44158 -14.12207 -13.88950 -13.78517 -13.74194 -13.57567 -13.12973 -13.12573 -12.93378 -12.91093 -12.78495 -12.67544 -12.34543 -12.14246 -12.12312 -12.01193 -11.72524 -11.08590 -10.57909 -10.24362 -10.09439 -9.96219 -8.32612 -5.96156 -0.88635 -0.51742 -0.11165 0.93767 1.35896 1.39890 1.50006 1.80191 1.86342 2.17885 2.27170 2.87129 3.00938 3.05575 3.20528 3.57191 3.70663 3.98932 4.06553 4.18551 4.23848 4.38489 4.49442 4.61765 4.71903 4.80425 4.93598 5.05169 5.12395 5.38457 5.41715 5.48777 5.94555 6.38984 7.07016 7.34619 7.89645 8.58831 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.013561 B = 0.005284 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.218547 B = 5297.468783 C = 6826.905261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.444 5.444 3 C -0.342 4.342 4 H 0.079 0.921 5 C 0.001 3.999 6 N -0.888 5.888 7 Si 0.995 3.005 8 H -0.274 1.274 9 H -0.264 1.264 10 H -0.273 1.273 11 C 0.459 3.541 12 O -0.620 6.620 13 C -0.129 4.129 14 C 0.000 4.000 15 C -0.659 4.659 16 S 2.508 3.492 17 C -0.622 4.622 18 O -0.980 6.980 19 O -0.959 6.959 20 C 0.003 3.997 21 C -0.124 4.124 22 C 0.025 3.975 23 Cl -0.056 7.056 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.276 0.724 28 H 0.141 0.859 29 H 0.146 0.854 30 H 0.160 0.840 31 H 0.166 0.834 32 H 0.195 0.805 33 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.294 -13.222 0.166 18.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.160 5.160 3 C -0.469 4.469 4 H 0.097 0.903 5 C -0.201 4.201 6 N -0.527 5.527 7 Si 0.818 3.182 8 H -0.200 1.200 9 H -0.188 1.188 10 H -0.198 1.198 11 C 0.248 3.752 12 O -0.509 6.509 13 C -0.134 4.134 14 C -0.020 4.020 15 C -0.743 4.743 16 S 2.689 3.311 17 C -0.777 4.777 18 O -0.978 6.978 19 O -0.956 6.956 20 C -0.016 4.016 21 C -0.143 4.143 22 C -0.003 4.003 23 Cl -0.026 7.026 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.159 0.841 29 H 0.164 0.836 30 H 0.178 0.822 31 H 0.184 0.816 32 H 0.212 0.788 33 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -11.538 -13.344 -0.441 17.646 hybrid contribution 1.008 1.585 0.915 2.090 sum -10.530 -11.759 0.474 15.792 Atomic orbital electron populations 1.21869 0.78540 0.98361 1.03632 1.43834 1.07339 1.04489 1.60314 1.19746 0.92958 0.83687 1.50553 0.90316 1.26083 0.96852 1.02072 0.95093 1.70192 1.06416 1.28712 1.47331 0.84980 0.77914 0.76497 0.78855 1.19970 1.18759 1.19826 1.18197 0.87210 0.83879 0.85913 1.90593 1.15191 1.87183 1.57892 1.20025 1.00357 0.95308 0.97751 1.21031 0.90489 0.96298 0.94142 1.30929 1.20403 1.01085 1.21863 1.05039 0.78330 0.74132 0.73561 1.30043 1.16988 1.14941 1.15701 1.93566 1.79748 1.69539 1.54933 1.93541 1.87603 1.29550 1.84914 1.21472 0.93406 0.97865 0.88819 1.21525 0.96728 0.95143 1.00926 1.21581 0.93566 0.95593 0.89567 1.98395 1.63605 1.96967 1.43674 0.92542 0.91727 0.92057 0.91314 0.84097 0.83570 0.82176 0.81598 0.78835 0.80194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.26 8.05 127.77 1.03 6.29 16 2 N -0.44 -23.42 3.02 -662.41 -2.00 -25.42 16 3 C -0.34 -19.52 9.56 84.10 0.80 -18.72 16 4 H 0.08 4.83 7.17 -2.91 -0.02 4.81 16 5 C 0.00 0.06 5.46 84.96 0.46 0.52 16 6 N -0.89 -44.60 9.44 21.68 0.20 -44.39 16 7 Si 0.99 41.98 29.56 68.60 2.03 44.01 16 8 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 9 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 10 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 11 C 0.46 23.69 6.50 86.73 0.56 24.26 16 12 O -0.62 -36.63 15.78 -4.03 -0.06 -36.69 16 13 C -0.13 -5.22 4.57 -20.07 -0.09 -5.31 16 14 C 0.00 0.01 7.16 22.54 0.16 0.17 16 15 C -0.66 -15.89 5.65 22.23 0.13 -15.76 16 16 S 2.51 47.94 5.79 -56.49 -0.33 47.61 16 17 C -0.62 -4.85 10.79 113.37 1.22 -3.62 16 18 O -0.98 -28.58 17.12 -127.65 -2.19 -30.77 16 19 O -0.96 -21.42 17.11 -127.65 -2.18 -23.61 16 20 C 0.00 0.06 9.46 22.33 0.21 0.27 16 21 C -0.12 -2.88 9.82 22.26 0.22 -2.67 16 22 C 0.03 0.85 6.35 22.61 0.14 1.00 16 23 Cl -0.06 -2.02 27.39 -2.72 -0.07 -2.10 16 24 H 0.06 2.05 5.22 -2.39 -0.01 2.04 16 25 H 0.06 3.04 6.89 -2.39 -0.02 3.02 16 26 H 0.06 2.77 7.20 -2.39 -0.02 2.75 16 27 H 0.28 12.92 8.31 -92.71 -0.77 12.15 16 28 H 0.14 4.94 7.29 -2.91 -0.02 4.92 16 29 H 0.15 1.11 8.14 -2.39 -0.02 1.10 16 30 H 0.16 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.17 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.19 2.12 7.56 -2.91 -0.02 2.10 16 33 H 0.18 2.81 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -81.14 312.02 1.41 -79.73 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: 1.16 Total: 5.20 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: 4.85 Total: -13.57 kcal Atomic # 7 Polarization: -68.02 SS G_CDS: -1.80 Total: -69.81 kcal Atomic # 8 Polarization: -86.63 SS G_CDS: -4.43 Total: -91.07 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 16 Polarization: 47.94 SS G_CDS: -0.33 Total: 47.61 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -0.07 Total: -2.10 kcal Total: -81.14 1.41 -79.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265884335.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.553 kcal (2) G-P(sol) polarization free energy of solvation -81.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds