Wall clock time and date at job start Tue Mar 31 2020 11:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47156 * 2 1 4 4 C 1.36915 * 119.99904 * 274.16506 * 3 2 1 5 5 H 1.07999 * 119.99880 * 183.01852 * 4 3 2 6 6 C 1.39010 * 120.00082 * 3.01115 * 4 3 2 7 7 N 1.31389 * 119.99895 * 18.66123 * 6 4 3 8 8 Si 1.86799 * 120.00137 * 198.66040 * 6 4 3 9 9 H 1.48500 * 109.47125 * 59.99949 * 8 6 4 10 10 H 1.48506 * 109.47082 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47038 * 299.99760 * 8 6 4 12 12 C 1.34778 * 120.00107 * 94.16067 * 3 2 1 13 13 O 1.21635 * 120.00145 * 3.60031 * 12 3 2 14 14 C 1.47379 * 120.00029 * 183.60404 * 12 3 2 15 15 C 1.39812 * 120.17746 * 308.02465 * 14 12 3 16 16 C 1.37811 * 119.90151 * 180.27712 * 15 14 12 17 17 Cl 1.73603 * 119.86553 * 179.76700 * 16 15 14 18 18 C 1.38810 * 120.26495 * 359.74372 * 16 15 14 19 19 Cl 1.73595 * 119.81796 * 179.97438 * 18 16 15 20 20 C 1.38217 * 120.36093 * 0.02562 * 18 16 15 21 21 C 1.38619 * 120.09175 * 359.97438 * 20 18 16 22 22 O 1.35683 * 120.12679 * 179.97438 * 21 20 18 23 23 C 1.42898 * 117.00178 * 359.97438 * 22 21 20 24 24 H 1.08995 * 109.47553 * 300.00390 * 1 2 3 25 25 H 1.09006 * 109.46796 * 60.00202 * 1 2 3 26 26 H 1.08999 * 109.46815 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47553 * 239.99610 * 2 1 3 28 28 H 1.09006 * 109.46796 * 119.99798 * 2 1 3 29 29 H 0.97001 * 120.00277 * 179.97438 * 7 6 4 30 30 H 1.08003 * 120.04599 * 0.04289 * 15 14 12 31 31 H 1.08005 * 119.94994 * 179.97438 * 20 18 16 32 32 H 1.08999 * 109.46926 * 179.97438 * 23 22 21 33 33 H 1.09001 * 109.47100 * 60.00075 * 23 22 21 34 34 H 1.08999 * 109.47285 * 300.00223 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1654 2.0553 -1.1826 5 1 2.5713 3.0561 -1.1868 6 6 1.7923 1.4515 -2.3779 7 7 0.9796 0.4192 -2.3667 8 14 2.4464 2.1078 -3.9998 9 1 3.9292 2.0271 -4.0046 10 1 1.9023 1.2959 -5.1179 11 1 2.0271 3.5226 -4.1665 12 6 2.3228 1.9883 1.1641 13 8 2.2549 1.3692 2.2089 14 6 2.7380 3.4024 1.1712 15 6 3.7716 3.8356 0.3353 16 6 4.1591 5.1580 0.3506 17 17 5.4467 5.6936 -0.6833 18 6 3.5237 6.0635 1.1891 19 17 4.0216 7.7265 1.1996 20 6 2.4974 5.6481 2.0165 21 6 2.0956 4.3214 2.0131 22 8 1.0886 3.9127 2.8254 23 6 0.4857 4.9035 3.6602 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.7190 -0.0020 -3.2008 30 1 4.2682 3.1341 -0.3188 31 1 2.0079 6.3582 2.6666 32 1 -0.3030 4.4450 4.2567 33 1 0.0596 5.6915 3.0392 34 1 1.2404 5.3299 4.3211 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267580683.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:02 Heat of formation + Delta-G solvation = -50.310269 kcal Electronic energy + Delta-G solvation = -22593.258420 eV Core-core repulsion = 18964.934115 eV Total energy + Delta-G solvation = -3628.324306 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.67942 -40.06033 -38.91474 -37.58985 -37.15469 -36.96414 -33.49928 -32.83988 -31.21932 -30.99912 -28.21073 -26.89961 -25.30268 -23.70763 -23.17122 -21.24149 -19.89650 -18.75888 -18.24627 -17.62406 -17.02574 -16.76285 -16.37706 -16.10061 -15.65022 -15.50076 -15.12368 -14.87516 -14.73568 -14.39670 -13.91619 -13.58947 -13.33337 -13.04859 -12.94334 -12.85001 -12.81166 -12.54274 -12.42375 -12.26339 -12.14306 -12.07695 -11.92406 -11.70333 -11.46078 -10.81314 -10.47831 -9.98818 -9.77702 -9.25211 -8.23633 -5.82876 -0.32035 0.01526 0.72679 1.07937 1.42934 1.50190 1.57632 1.88069 2.24013 2.26057 2.39985 2.93013 3.14278 3.50670 3.82194 3.94147 4.16472 4.28491 4.38063 4.45681 4.54899 4.58397 4.73351 4.82655 4.83473 4.89331 4.97730 5.14844 5.28676 5.39128 5.48769 5.76725 5.92090 6.27764 6.49332 7.10354 7.54560 7.96332 8.67596 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.012041 B = 0.006406 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.761501 B = 4369.722657 C = 6065.528591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.134 3.866 3 N -0.432 5.432 4 C -0.359 4.359 5 H 0.115 0.885 6 C 0.003 3.997 7 N -0.870 5.870 8 Si 0.976 3.024 9 H -0.265 1.265 10 H -0.279 1.279 11 H -0.268 1.268 12 C 0.478 3.522 13 O -0.633 6.633 14 C -0.128 4.128 15 C -0.029 4.029 16 C -0.078 4.078 17 Cl -0.044 7.044 18 C 0.017 3.983 19 Cl -0.030 7.030 20 C -0.185 4.185 21 C 0.171 3.829 22 O -0.321 6.321 23 C 0.010 3.990 24 H 0.006 0.994 25 H 0.081 0.919 26 H 0.054 0.946 27 H 0.094 0.906 28 H 0.031 0.969 29 H 0.273 0.727 30 H 0.152 0.848 31 H 0.182 0.818 32 H 0.116 0.884 33 H 0.076 0.924 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.598 12.585 3.752 13.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.011 3.989 3 N -0.148 5.148 4 C -0.486 4.486 5 H 0.133 0.867 6 C -0.201 4.201 7 N -0.508 5.508 8 Si 0.800 3.200 9 H -0.189 1.189 10 H -0.204 1.204 11 H -0.192 1.192 12 C 0.268 3.732 13 O -0.523 6.523 14 C -0.133 4.133 15 C -0.049 4.049 16 C -0.106 4.106 17 Cl -0.015 7.015 18 C -0.012 4.012 19 Cl -0.001 7.001 20 C -0.204 4.204 21 C 0.123 3.877 22 O -0.233 6.233 23 C -0.084 4.084 24 H 0.025 0.975 25 H 0.100 0.900 26 H 0.073 0.927 27 H 0.112 0.888 28 H 0.049 0.951 29 H 0.083 0.917 30 H 0.169 0.831 31 H 0.199 0.801 32 H 0.134 0.866 33 H 0.094 0.906 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.504 12.106 4.008 12.996 hybrid contribution 0.154 0.204 -0.791 0.831 sum 2.658 12.310 3.217 12.998 Atomic orbital electron populations 1.21944 0.95672 1.00457 1.00116 1.21351 0.95347 0.82558 0.99624 1.44033 1.53405 1.12010 1.05315 1.20286 1.43173 1.01927 0.83165 0.86745 1.25995 0.94976 0.96888 1.02202 1.70280 1.28954 1.23061 1.28509 0.85229 0.79244 0.78517 0.77060 1.18936 1.20405 1.19247 1.17906 0.84970 0.86810 0.83503 1.90598 1.62264 1.66733 1.32702 1.19342 0.99761 0.94224 0.99941 1.21024 0.94247 0.94051 0.95565 1.20411 0.97169 0.93299 0.99717 1.98354 1.47650 1.89923 1.65581 1.20540 0.96618 0.86641 0.97358 1.98374 1.90284 1.13823 1.97593 1.21098 1.00444 0.94579 1.04291 1.18938 0.87887 0.91395 0.89504 1.86261 1.45962 1.39493 1.51570 1.23544 0.98885 0.92193 0.93779 0.97532 0.90025 0.92716 0.88845 0.95074 0.91682 0.83054 0.80062 0.86607 0.90570 0.90406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.88 9.56 71.98 0.69 -5.19 16 2 C 0.13 6.74 5.46 86.38 0.47 7.21 16 3 N -0.43 -22.30 2.62 -639.30 -1.68 -23.98 16 4 C -0.36 -17.70 8.59 84.08 0.72 -16.97 16 5 H 0.12 5.35 4.68 -2.91 -0.01 5.34 16 6 C 0.00 0.12 5.15 84.94 0.44 0.56 16 7 N -0.87 -42.26 7.59 21.67 0.16 -42.09 16 8 Si 0.98 37.85 29.59 68.60 2.03 39.88 16 9 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 10 H -0.28 -10.63 7.11 99.48 0.71 -9.93 16 11 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 12 C 0.48 24.60 6.85 86.65 0.59 25.20 16 13 O -0.63 -36.07 16.17 1.35 0.02 -36.05 16 14 C -0.13 -5.52 5.08 -20.01 -0.10 -5.62 16 15 C -0.03 -1.10 7.19 22.55 0.16 -0.94 16 16 C -0.08 -2.50 6.31 22.31 0.14 -2.36 16 17 Cl -0.04 -1.24 27.93 -2.72 -0.08 -1.32 16 18 C 0.02 0.47 6.33 22.40 0.14 0.61 16 19 Cl -0.03 -0.69 27.93 -2.72 -0.08 -0.77 16 20 C -0.18 -5.17 8.80 22.36 0.20 -4.98 16 21 C 0.17 6.30 6.68 22.84 0.15 6.45 16 22 O -0.32 -11.80 9.63 -84.52 -0.81 -12.62 16 23 C 0.01 0.21 9.81 113.37 1.11 1.32 16 24 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 25 H 0.08 4.12 5.92 -2.38 -0.01 4.10 16 26 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.09 4.77 5.97 -2.39 -0.01 4.75 16 28 H 0.03 1.59 7.26 -2.38 -0.02 1.58 16 29 H 0.27 12.51 8.31 -92.71 -0.77 11.74 16 30 H 0.15 5.83 7.08 -2.91 -0.02 5.81 16 31 H 0.18 3.62 6.29 -2.91 -0.02 3.61 16 32 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.08 1.34 7.66 -2.39 -0.02 1.32 16 34 H 0.08 1.34 7.66 -2.39 -0.02 1.33 16 Total: -1.00 -61.60 313.85 5.45 -56.15 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 1.16 Total: 15.50 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 4.72 Total: 5.29 kcal Atomic # 7 Polarization: -64.56 SS G_CDS: -1.51 Total: -66.07 kcal Atomic # 8 Polarization: -47.88 SS G_CDS: -0.79 Total: -48.67 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.88 kcal Atomic # 17 Polarization: -1.93 SS G_CDS: -0.15 Total: -2.09 kcal Total: -61.60 5.45 -56.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267580683.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.838 kcal (2) G-P(sol) polarization free energy of solvation -61.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds